Wall clock time and date at job start Mon Mar 30 2020 03:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99865 * 2 1 4 4 C 1.46895 * 111.00032 * 123.95766 * 2 1 3 5 5 H 1.09007 * 109.46759 * 194.46438 * 4 2 1 6 6 C 1.53003 * 109.47125 * 314.46371 * 4 2 1 7 7 C 1.50691 * 109.47089 * 283.02233 * 6 4 2 8 8 H 1.08003 * 120.00167 * 355.58938 * 7 6 4 9 9 C 1.37881 * 119.99976 * 175.59879 * 7 6 4 10 10 N 1.31517 * 119.99652 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00177 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47202 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47341 * 119.99293 * 11 9 7 14 14 H 1.48494 * 109.47098 * 239.99438 * 11 9 7 15 15 C 1.50697 * 109.47119 * 74.46706 * 4 2 1 16 16 C 1.38226 * 119.61868 * 9.44525 * 15 4 2 17 17 C 1.38627 * 119.16153 * 179.79531 * 16 15 4 18 18 C 1.38679 * 118.41729 * 0.46438 * 17 16 15 19 19 C 1.38183 * 119.16488 * 359.51422 * 18 17 16 20 20 N 1.31855 * 119.61720 * 189.46471 * 15 4 2 21 21 H 1.08997 * 109.47130 * 304.54162 * 1 2 3 22 22 H 1.08999 * 109.47430 * 64.54252 * 1 2 3 23 23 H 1.09001 * 109.47372 * 184.54065 * 1 2 3 24 24 H 1.09002 * 109.47161 * 182.91270 * 3 2 1 25 25 H 1.09001 * 109.47677 * 302.91781 * 3 2 1 26 26 H 1.09003 * 109.47096 * 62.91588 * 3 2 1 27 27 H 1.08996 * 109.46821 * 43.02387 * 6 4 2 28 28 H 1.08999 * 109.46554 * 163.01867 * 6 4 2 29 29 H 0.97005 * 119.99535 * 180.02562 * 10 9 7 30 30 H 1.08001 * 120.42115 * 0.04088 * 16 15 4 31 31 H 1.07993 * 120.79372 * 180.23264 * 17 16 15 32 32 H 1.08000 * 120.41571 * 179.77965 * 18 17 16 33 33 H 1.08001 * 119.61598 * 180.24454 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0547 -0.5433 1.2664 6 6 1.2349 -0.3803 2.4078 7 6 1.7295 0.9539 2.9039 8 1 2.5564 1.4413 2.4088 9 6 1.1266 1.5523 3.9899 10 7 0.1194 0.9589 4.5925 11 14 1.7392 3.2065 4.6043 12 1 2.8741 3.6588 3.7601 13 1 0.6389 4.2010 4.5293 14 1 2.1921 3.0747 6.0124 15 6 1.8202 -2.2396 0.8749 16 6 1.4189 -2.6675 -0.3767 17 6 1.2648 -4.0254 -0.6090 18 6 1.5119 -4.9056 0.4338 19 6 1.9105 -4.4041 1.6582 20 7 2.0512 -3.1057 1.8419 21 1 -0.3633 0.5827 0.8465 22 1 -0.3634 0.4417 -0.9279 23 1 -0.3634 -1.0244 0.0814 24 1 3.0838 1.3429 -0.0522 25 1 1.6043 1.9109 -0.8626 26 1 1.6888 1.8783 0.9150 27 1 0.1695 -0.3138 2.1874 28 1 1.4007 -1.1373 3.1744 29 1 -0.3050 1.3801 5.3563 30 1 1.2316 -1.9532 -1.1648 31 1 0.9561 -4.3891 -1.5779 32 1 1.3985 -5.9699 0.2895 33 1 2.1087 -5.0833 2.4742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259550338.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:42 Heat of formation + Delta-G solvation = 27.423848 kcal Electronic energy + Delta-G solvation = -15101.106177 eV Core-core repulsion = 12740.379256 eV Total energy + Delta-G solvation = -2360.726922 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23384 -38.78999 -34.85302 -33.46438 -32.51669 -30.67516 -28.46129 -27.58059 -24.76828 -23.82447 -23.61898 -20.83776 -18.66863 -17.62966 -17.17562 -16.68773 -16.26245 -16.16794 -15.49885 -15.15530 -14.69126 -14.38135 -13.93450 -13.75104 -13.15688 -13.04088 -12.76359 -12.59640 -12.54150 -12.40449 -12.17025 -12.00702 -11.87435 -11.14374 -10.66674 -10.54304 -10.15505 -9.69708 -9.02444 -8.18453 -6.25989 0.33954 0.54341 1.36681 1.38132 1.50127 2.39121 2.99642 3.04286 3.15958 3.77329 4.04656 4.13953 4.38289 4.39482 4.41557 4.53398 4.70359 4.79267 4.83566 4.91130 5.04143 5.07352 5.14544 5.34053 5.37241 5.40598 5.51119 5.56282 5.81937 5.96525 6.17339 6.22577 6.31048 6.87071 7.29798 7.39246 8.93334 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.036298 B = 0.008643 C = 0.007583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.214864 B = 3238.680460 C = 3691.455658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.522 5.522 3 C 0.014 3.986 4 C 0.137 3.863 5 H 0.069 0.931 6 C 0.013 3.987 7 C -0.523 4.523 8 H 0.067 0.933 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.958 3.042 12 H -0.258 1.258 13 H -0.279 1.279 14 H -0.284 1.284 15 C 0.119 3.881 16 C -0.159 4.159 17 C -0.081 4.081 18 C -0.176 4.176 19 C 0.075 3.925 20 N -0.523 5.523 21 H 0.012 0.988 22 H 0.088 0.912 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.007 0.993 28 H -0.007 1.007 29 H 0.260 0.740 30 H 0.153 0.847 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -7.304 -11.936 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.245 5.245 3 C -0.134 4.134 4 C 0.028 3.972 5 H 0.087 0.913 6 C -0.025 4.025 7 C -0.561 4.561 8 H 0.085 0.915 9 C -0.197 4.197 10 N -0.573 5.573 11 Si 0.783 3.217 12 H -0.182 1.182 13 H -0.205 1.205 14 H -0.210 1.210 15 C -0.018 4.018 16 C -0.178 4.178 17 C -0.106 4.106 18 C -0.195 4.195 19 C -0.082 4.082 20 N -0.233 5.233 21 H 0.031 0.969 22 H 0.106 0.894 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.025 0.975 28 H 0.011 0.989 29 H 0.069 0.931 30 H 0.171 0.829 31 H 0.186 0.814 32 H 0.186 0.814 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.019 -7.189 -11.431 13.654 hybrid contribution -0.430 0.915 1.019 1.436 sum 1.589 -6.274 -10.412 12.260 Atomic orbital electron populations 1.22372 0.88121 1.01016 1.00616 1.62352 1.07882 1.14287 1.39968 1.22621 1.00009 0.88897 1.01861 1.20339 0.98591 0.87800 0.90511 0.91256 1.19529 0.95139 0.95408 0.92458 1.21675 1.16329 1.04697 1.13405 0.91470 1.25906 0.95260 1.01598 0.96909 1.70136 1.24419 1.40404 1.22354 0.85504 0.78599 0.79447 0.78185 1.18220 1.20473 1.20956 1.21302 0.94994 0.95247 0.90258 1.22218 1.00196 0.97565 0.97868 1.22040 0.95677 0.92270 1.00656 1.22458 1.00875 1.02612 0.93557 1.23183 0.95967 0.90834 0.98222 1.67330 1.16135 1.04724 1.35074 0.96946 0.89375 0.92554 0.91935 0.90153 0.94125 0.97525 0.98880 0.93104 0.82925 0.81419 0.81383 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 7.72 127.69 0.99 1.98 16 2 N -0.52 -19.76 3.72 -927.73 -3.45 -23.21 16 3 C 0.01 0.51 8.72 127.69 1.11 1.62 16 4 C 0.14 6.10 2.36 44.17 0.10 6.20 16 5 H 0.07 3.25 7.75 -2.38 -0.02 3.23 16 6 C 0.01 0.72 4.16 29.85 0.12 0.84 16 7 C -0.52 -29.59 7.08 25.60 0.18 -29.41 16 8 H 0.07 3.63 6.16 -2.91 -0.02 3.61 16 9 C 0.00 0.04 5.46 84.66 0.46 0.51 16 10 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 11 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 15 C 0.12 4.80 5.81 42.55 0.25 5.05 16 16 C -0.16 -5.02 8.09 22.36 0.18 -4.84 16 17 C -0.08 -1.96 10.18 22.47 0.23 -1.73 16 18 C -0.18 -4.18 10.11 22.36 0.23 -3.96 16 19 C 0.08 2.35 11.18 84.67 0.95 3.29 16 20 N -0.52 -21.72 9.44 -183.89 -1.74 -23.45 16 21 H 0.01 0.54 6.43 -2.39 -0.02 0.52 16 22 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 23 H 0.06 2.05 6.43 -2.39 -0.02 2.04 16 24 H 0.06 2.13 8.05 -2.39 -0.02 2.11 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.04 1.75 5.09 -2.39 -0.01 1.73 16 27 H 0.01 0.38 5.48 -2.39 -0.01 0.37 16 28 H -0.01 -0.45 7.37 -2.39 -0.02 -0.46 16 29 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 30 H 0.15 4.50 6.47 -2.91 -0.02 4.48 16 31 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 33 H 0.17 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -69.66 266.16 3.02 -66.64 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.09 Total: 11.25 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 4.80 Total: -20.44 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -4.90 Total: -104.27 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -69.66 3.02 -66.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259550338.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.064 kcal (2) G-P(sol) polarization free energy of solvation -69.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds