Wall clock time and date at job start Mon Mar 30 2020 03:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36416 * 126.56078 * 2 1 4 4 C 1.36213 * 107.19417 * 180.13672 * 3 2 1 5 5 C 1.50704 * 125.69003 * 179.90054 * 4 3 2 6 6 C 1.54892 * 110.59841 * 328.03337 * 5 4 3 7 7 C 1.54888 * 102.74611 * 156.67350 * 6 5 4 8 8 C 1.54265 * 104.19721 * 322.05788 * 7 6 5 9 9 C 1.53873 * 106.59997 * 23.61451 * 8 7 6 10 10 N 1.32761 * 108.62142 * 359.63636 * 4 3 2 11 11 C 1.32985 * 109.22180 * 0.22566 * 10 4 3 12 12 C 1.39998 * 125.95868 * 180.02562 * 11 10 4 13 13 H 1.08000 * 119.99454 * 179.97438 * 12 11 10 14 14 C 1.40237 * 120.00359 * 359.97438 * 12 11 10 15 15 N 1.30691 * 119.99825 * 359.97438 * 14 12 11 16 16 Si 1.86789 * 119.99967 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47286 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46995 * 119.99669 * 16 14 12 19 19 H 1.48497 * 109.47457 * 239.99828 * 16 14 12 20 20 H 1.08997 * 109.46919 * 270.26925 * 1 2 3 21 21 H 1.09002 * 109.46933 * 30.26135 * 1 2 3 22 22 H 1.09000 * 109.47168 * 150.26464 * 1 2 3 23 23 H 1.07999 * 126.40026 * 0.03276 * 3 2 1 24 24 H 1.09002 * 110.43639 * 205.41628 * 5 4 3 25 25 H 1.08992 * 110.75663 * 274.99212 * 6 5 4 26 26 H 1.09000 * 110.75339 * 38.36236 * 6 5 4 27 27 H 1.09007 * 110.48520 * 203.37936 * 7 6 5 28 28 H 1.08996 * 110.48377 * 80.74349 * 7 6 5 29 29 H 1.08993 * 110.03585 * 264.31946 * 8 7 6 30 30 H 1.09006 * 110.07186 * 142.91875 * 8 7 6 31 31 H 1.09002 * 110.03017 * 240.71676 * 9 8 7 32 32 H 1.08992 * 110.03600 * 119.28231 * 9 8 7 33 33 H 0.96998 * 119.99829 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2776 1.0957 0.0000 4 6 3.5627 0.6440 -0.0031 5 6 4.7980 1.5072 -0.0064 6 6 4.5383 2.8275 -0.7736 7 6 5.6031 3.7829 -0.1800 8 6 5.6533 3.4106 1.3162 9 6 5.1415 1.9637 1.4266 10 7 3.5455 -0.6835 0.0030 11 6 2.2842 -1.1049 0.0051 12 6 1.8636 -2.4402 0.0118 13 1 0.8093 -2.6742 0.0133 14 6 2.8113 -3.4739 0.0165 15 7 4.0872 -3.1907 0.0141 16 14 2.2501 -5.2555 0.0262 17 1 0.7660 -5.3070 0.0269 18 1 2.7682 -5.9442 -1.1832 19 1 2.7699 -5.9317 1.2418 20 1 -0.3633 0.0048 1.0276 21 1 -0.3633 0.8877 -0.5179 22 1 -0.3633 -0.8923 -0.5097 23 1 1.9612 2.1283 0.0005 24 1 5.6373 0.9689 -0.4467 25 1 4.6960 2.6900 -1.8433 26 1 3.5328 3.1983 -0.5748 27 1 5.2958 4.8213 -0.3046 28 1 6.5723 3.6121 -0.6484 29 1 5.0105 4.0788 1.8891 30 1 6.6778 3.4732 1.6832 31 1 4.2501 1.9297 2.0530 32 1 5.9179 1.3240 1.8463 33 1 4.7427 -3.9056 0.0178 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259577114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:25 Heat of formation + Delta-G solvation = 36.656853 kcal Electronic energy + Delta-G solvation = -14882.319426 eV Core-core repulsion = 12521.992878 eV Total energy + Delta-G solvation = -2360.326549 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92461 -37.28302 -33.27248 -32.39466 -29.38840 -28.16655 -27.57693 -25.81592 -23.96455 -20.75665 -20.01034 -19.39642 -17.96441 -16.59937 -15.69693 -15.04452 -14.49974 -14.12806 -14.03140 -13.06978 -12.85091 -12.74480 -12.06598 -11.85748 -11.74647 -11.16693 -11.06313 -10.81269 -10.75805 -10.62769 -10.46439 -10.31231 -10.09707 -9.91819 -9.79312 -9.13542 -7.74890 -7.67289 -6.88203 -6.32949 -4.19365 3.07280 3.19023 3.22480 3.70176 4.07025 4.53361 4.67972 5.16885 5.21393 5.25543 5.66804 5.73311 5.86996 5.96186 6.04363 6.09203 6.13669 6.17043 6.19948 6.31800 6.35518 6.44496 6.55590 6.68137 6.77434 6.84407 6.99756 7.28724 7.46918 7.71026 8.16879 8.33604 8.66470 9.04365 9.41298 10.34296 10.60545 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038066 B = 0.007984 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.384215 B = 3506.267916 C = 4024.198924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.513 5.513 3 C -0.170 4.170 4 C 0.022 3.978 5 C 0.002 3.998 6 C -0.114 4.114 7 C -0.124 4.124 8 C -0.123 4.123 9 C -0.111 4.111 10 N -0.511 5.511 11 C 0.374 3.626 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.082 3.918 15 N -0.743 5.743 16 Si 0.908 3.092 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.276 1.276 20 H 0.047 0.953 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.132 0.868 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 7.568 0.387 7.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.203 5.203 3 C -0.300 4.300 4 C -0.112 4.112 5 C -0.017 4.017 6 C -0.152 4.152 7 C -0.162 4.162 8 C -0.160 4.160 9 C -0.149 4.149 10 N -0.232 5.232 11 C 0.131 3.869 12 C -0.504 4.504 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.368 5.368 16 Si 0.733 3.267 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.201 1.201 20 H 0.065 0.935 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.150 0.850 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.091 7.048 0.392 7.060 hybrid contribution -1.131 -0.234 0.054 1.156 sum -1.222 6.815 0.446 6.938 Atomic orbital electron populations 1.21405 0.80357 1.01867 1.00733 1.45309 1.04853 1.07080 1.63107 1.21491 0.91366 0.90484 1.26667 1.20381 0.91424 0.92892 1.06462 1.20004 0.94801 0.92681 0.94236 1.22530 0.98514 0.95052 0.99063 1.22352 0.99297 0.98671 0.95864 1.22141 1.00240 0.97261 0.96385 1.22137 1.00587 0.94471 0.97700 1.71165 1.17451 1.06648 1.27895 1.20245 0.83385 0.87568 0.95708 1.18112 0.93938 0.87069 1.51271 0.90574 1.25672 0.94436 1.00351 0.93632 1.70032 1.00872 1.33223 1.32680 0.86282 0.79674 0.82431 0.78302 1.18864 1.20106 1.20104 0.93476 0.92515 0.91004 0.85030 0.90855 0.92168 0.91530 0.92452 0.92055 0.92534 0.92583 0.92005 0.92307 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.92 10.96 59.85 0.66 2.57 16 2 N -0.51 -12.67 3.21 -123.36 -0.40 -13.06 16 3 C -0.17 -4.04 10.70 -16.24 -0.17 -4.21 16 4 C 0.02 0.56 5.95 -82.92 -0.49 0.06 16 5 C 0.00 0.05 3.37 -90.11 -0.30 -0.25 16 6 C -0.11 -1.90 6.19 -24.74 -0.15 -2.05 16 7 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 16 8 C -0.12 -1.76 6.80 -25.61 -0.17 -1.93 16 9 C -0.11 -2.01 6.36 -25.61 -0.16 -2.18 16 10 N -0.51 -15.02 9.41 -8.95 -0.08 -15.10 16 11 C 0.37 10.69 7.43 -155.60 -1.16 9.53 16 12 C -0.46 -12.90 9.00 -38.17 -0.34 -13.25 16 13 H 0.08 1.96 7.16 -52.49 -0.38 1.58 16 14 C 0.08 2.21 5.50 -17.29 -0.10 2.12 16 15 N -0.74 -21.15 11.90 55.56 0.66 -20.49 16 16 Si 0.91 19.52 29.56 -169.99 -5.03 14.50 16 17 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.07 1.32 7.38 -51.93 -0.38 0.94 16 23 H 0.13 2.71 7.00 -52.49 -0.37 2.35 16 24 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.11 6.48 -51.93 -0.34 0.77 16 27 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.20 7.83 -51.93 -0.41 0.79 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 LS Contribution 271.92 15.07 4.10 4.10 Total: -1.00 -31.77 271.92 -8.13 -39.90 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.81 Total: 1.64 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -2.57 Total: -11.47 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.18 Total: -48.66 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.77 -8.13 -39.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259577114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.556 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds