Wall clock time and date at job start Mon Mar 30 2020 03:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36416 * 126.56078 * 2 1 4 4 C 1.36213 * 107.19417 * 180.13672 * 3 2 1 5 5 C 1.50704 * 125.69003 * 179.90054 * 4 3 2 6 6 C 1.54892 * 110.59841 * 328.03337 * 5 4 3 7 7 C 1.54888 * 102.74611 * 156.67350 * 6 5 4 8 8 C 1.54265 * 104.19721 * 322.05788 * 7 6 5 9 9 C 1.53873 * 106.59997 * 23.61451 * 8 7 6 10 10 N 1.32761 * 108.62142 * 359.63636 * 4 3 2 11 11 C 1.32985 * 109.22180 * 0.22566 * 10 4 3 12 12 C 1.39998 * 125.95868 * 180.02562 * 11 10 4 13 13 H 1.08000 * 119.99454 * 179.97438 * 12 11 10 14 14 C 1.40237 * 120.00359 * 359.97438 * 12 11 10 15 15 N 1.30691 * 119.99825 * 359.97438 * 14 12 11 16 16 Si 1.86789 * 119.99967 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47286 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46995 * 119.99669 * 16 14 12 19 19 H 1.48497 * 109.47457 * 239.99828 * 16 14 12 20 20 H 1.08997 * 109.46919 * 270.26925 * 1 2 3 21 21 H 1.09002 * 109.46933 * 30.26135 * 1 2 3 22 22 H 1.09000 * 109.47168 * 150.26464 * 1 2 3 23 23 H 1.07999 * 126.40026 * 0.03276 * 3 2 1 24 24 H 1.09002 * 110.43639 * 205.41628 * 5 4 3 25 25 H 1.08992 * 110.75663 * 274.99212 * 6 5 4 26 26 H 1.09000 * 110.75339 * 38.36236 * 6 5 4 27 27 H 1.09007 * 110.48520 * 203.37936 * 7 6 5 28 28 H 1.08996 * 110.48377 * 80.74349 * 7 6 5 29 29 H 1.08993 * 110.03585 * 264.31946 * 8 7 6 30 30 H 1.09006 * 110.07186 * 142.91875 * 8 7 6 31 31 H 1.09002 * 110.03017 * 240.71676 * 9 8 7 32 32 H 1.08992 * 110.03600 * 119.28231 * 9 8 7 33 33 H 0.96998 * 119.99829 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2776 1.0957 0.0000 4 6 3.5627 0.6440 -0.0031 5 6 4.7980 1.5072 -0.0064 6 6 4.5383 2.8275 -0.7736 7 6 5.6031 3.7829 -0.1800 8 6 5.6533 3.4106 1.3162 9 6 5.1415 1.9637 1.4266 10 7 3.5455 -0.6835 0.0030 11 6 2.2842 -1.1049 0.0051 12 6 1.8636 -2.4402 0.0118 13 1 0.8093 -2.6742 0.0133 14 6 2.8113 -3.4739 0.0165 15 7 4.0872 -3.1907 0.0141 16 14 2.2501 -5.2555 0.0262 17 1 0.7660 -5.3070 0.0269 18 1 2.7682 -5.9442 -1.1832 19 1 2.7699 -5.9317 1.2418 20 1 -0.3633 0.0048 1.0276 21 1 -0.3633 0.8877 -0.5179 22 1 -0.3633 -0.8923 -0.5097 23 1 1.9612 2.1283 0.0005 24 1 5.6373 0.9689 -0.4467 25 1 4.6960 2.6900 -1.8433 26 1 3.5328 3.1983 -0.5748 27 1 5.2958 4.8213 -0.3046 28 1 6.5723 3.6121 -0.6484 29 1 5.0105 4.0788 1.8891 30 1 6.6778 3.4732 1.6832 31 1 4.2501 1.9297 2.0530 32 1 5.9179 1.3240 1.8463 33 1 4.7427 -3.9056 0.0178 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259577114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:24 Heat of formation + Delta-G solvation = 18.161572 kcal Electronic energy + Delta-G solvation = -14883.121442 eV Core-core repulsion = 12521.992878 eV Total energy + Delta-G solvation = -2361.128564 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.83302 -38.68731 -35.26679 -34.17942 -31.14337 -29.49539 -29.29074 -27.61442 -25.77762 -22.33455 -21.69991 -20.91180 -19.72767 -18.55709 -17.42720 -16.57469 -16.20027 -15.78022 -15.53993 -14.70570 -14.67477 -14.11312 -13.68012 -13.50405 -13.40298 -12.87584 -12.81740 -12.53685 -12.11819 -11.97784 -11.94893 -11.84963 -11.68864 -11.39417 -11.21235 -11.07263 -9.71415 -9.68277 -8.85689 -8.31203 -6.25206 1.35289 1.42399 1.58366 1.83380 2.26853 2.74331 2.76469 3.59990 3.86987 3.90197 3.99955 4.26543 4.45220 4.58103 4.60779 4.67845 4.72915 4.75614 4.80785 4.92248 4.94201 5.10307 5.16604 5.21311 5.27502 5.38852 5.47444 5.58823 5.67411 5.77329 6.21588 6.34922 6.75550 7.04509 7.43860 8.36630 8.65412 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038066 B = 0.007984 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.384215 B = 3506.267916 C = 4024.198924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.518 5.518 3 C -0.157 4.157 4 C -0.011 4.011 5 C -0.004 4.004 6 C -0.106 4.106 7 C -0.115 4.115 8 C -0.114 4.114 9 C -0.107 4.107 10 N -0.559 5.559 11 C 0.334 3.666 12 C -0.494 4.494 13 H 0.087 0.913 14 C 0.030 3.970 15 N -0.793 5.793 16 Si 0.993 3.007 17 H -0.251 1.251 18 H -0.270 1.270 19 H -0.270 1.270 20 H 0.062 0.938 21 H 0.090 0.910 22 H 0.073 0.927 23 H 0.168 0.832 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 8.921 0.418 9.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.208 5.208 3 C -0.287 4.287 4 C -0.143 4.143 5 C -0.024 4.024 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.151 4.151 9 C -0.146 4.146 10 N -0.281 5.281 11 C 0.089 3.911 12 C -0.533 4.533 13 H 0.105 0.895 14 C -0.188 4.188 15 N -0.420 5.420 16 Si 0.814 3.186 17 H -0.175 1.175 18 H -0.195 1.195 19 H -0.195 1.195 20 H 0.081 0.919 21 H 0.109 0.891 22 H 0.092 0.908 23 H 0.185 0.815 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.147 8.437 0.423 8.525 hybrid contribution -0.853 -0.554 0.048 1.018 sum -2.000 7.883 0.471 8.146 Atomic orbital electron populations 1.21722 0.77175 1.03671 1.02319 1.45629 1.07007 1.06295 1.61833 1.22053 0.90908 0.91708 1.24030 1.21154 0.93934 0.92187 1.07053 1.20129 0.92213 0.93710 0.96341 1.22480 0.99907 0.93437 0.98621 1.22332 0.98651 0.99354 0.94866 1.22101 1.01454 0.94242 0.97313 1.22078 0.99523 0.97256 0.95725 1.71063 1.18965 1.09145 1.28901 1.20610 0.84208 0.88929 0.97345 1.18548 0.94809 0.87626 1.52336 0.89461 1.26760 0.94208 1.05399 0.92463 1.70185 1.02449 1.35041 1.34307 0.85009 0.79699 0.75509 0.78402 1.17451 1.19503 1.19543 0.91900 0.89121 0.90825 0.81520 0.93517 0.92298 0.91112 0.89485 0.91262 0.90813 0.90805 0.93742 0.93685 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.39 10.96 127.77 1.40 4.79 16 2 N -0.52 -25.45 3.21 -544.21 -1.75 -27.20 16 3 C -0.16 -7.34 10.70 83.51 0.89 -6.44 16 4 C -0.01 -0.55 5.95 41.95 0.25 -0.30 16 5 C 0.00 -0.18 3.37 -10.46 -0.04 -0.21 16 6 C -0.11 -3.39 6.19 31.89 0.20 -3.19 16 7 C -0.11 -2.79 6.83 31.67 0.22 -2.58 16 8 C -0.11 -2.95 6.80 31.32 0.21 -2.73 16 9 C -0.11 -3.91 6.36 31.32 0.20 -3.71 16 10 N -0.56 -34.26 9.41 -182.21 -1.71 -35.98 16 11 C 0.33 19.63 7.43 133.59 0.99 20.63 16 12 C -0.49 -28.08 9.00 23.18 0.21 -27.87 16 13 H 0.09 4.53 7.16 -2.91 -0.02 4.51 16 14 C 0.03 1.66 5.50 85.35 0.47 2.13 16 15 N -0.79 -47.10 11.90 21.88 0.26 -46.84 16 16 Si 0.99 40.69 29.56 68.60 2.03 42.72 16 17 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 18 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 20 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 21 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 22 H 0.07 2.61 7.38 -2.39 -0.02 2.60 16 23 H 0.17 6.43 7.00 -2.91 -0.02 6.41 16 24 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.07 2.17 6.48 -2.39 -0.02 2.16 16 27 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.04 1.73 7.83 -2.39 -0.02 1.72 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.27 14.78 8.29 -92.71 -0.77 14.01 16 Total: -1.00 -72.36 271.92 4.92 -67.44 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 1.08 Total: 19.36 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 5.00 Total: -19.50 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.20 Total: -110.02 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -72.36 4.92 -67.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259577114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.601 kcal (2) G-P(sol) polarization free energy of solvation -72.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds