Wall clock time and date at job start Mon Mar 30 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86801 * 119.99616 * 2 1 4 4 H 1.48498 * 109.47034 * 274.79091 * 3 2 1 5 5 H 1.48493 * 109.47394 * 34.79595 * 3 2 1 6 6 H 1.48504 * 109.46812 * 154.79292 * 3 2 1 7 7 C 1.39967 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 169.53325 * 7 2 1 9 9 C 1.40585 * 119.99845 * 349.54114 * 7 2 1 10 10 C 1.44399 * 123.72167 * 337.81760 * 9 7 2 11 11 C 1.32476 * 114.43936 * 179.97438 * 10 9 7 12 12 S 1.75475 * 111.37134 * 359.76060 * 11 10 9 13 13 C 1.39317 * 123.71869 * 157.78769 * 9 7 2 14 14 C 1.47140 * 125.22813 * 0.02562 * 13 9 7 15 15 C 1.47123 * 127.41287 * 179.70438 * 14 13 9 16 16 C 1.35159 * 103.27589 * 180.26190 * 15 14 13 17 17 O 1.34014 * 107.02359 * 0.02562 * 16 15 14 18 18 N 1.20759 * 113.07354 * 359.97438 * 17 16 15 19 19 H 0.96996 * 119.99978 * 0.02562 * 1 2 3 20 20 H 1.08001 * 122.77639 * 359.95591 * 10 9 7 21 21 H 1.07996 * 124.31660 * 180.02562 * 11 10 9 22 22 H 1.08008 * 128.36144 * 0.23176 * 15 14 13 23 23 H 1.08003 * 126.48791 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3890 2.1049 -1.3952 5 1 1.4946 2.6213 0.7989 6 1 3.5873 1.4131 0.5963 7 6 2.0087 -1.2121 0.0005 8 1 3.0753 -1.2199 -0.1694 9 6 1.3233 -2.4194 0.2221 10 6 0.0487 -2.5058 0.8950 11 6 -0.4317 -3.7356 1.0033 12 16 0.6483 -4.9105 0.2739 13 6 1.7988 -3.6644 -0.1839 14 6 3.0670 -3.8989 -0.8923 15 6 3.6172 -5.1888 -1.3370 16 6 4.7872 -4.8432 -1.9188 17 8 4.8964 -3.5112 -1.8193 18 7 3.9567 -2.9998 -1.2593 19 1 -0.4850 0.8400 -0.0004 20 1 -0.4699 -1.6395 1.2785 21 1 -1.3706 -3.9830 1.4762 22 1 3.1896 -6.1743 -1.2251 23 1 5.4993 -5.5136 -2.3770 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259644053.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:20 Heat of formation + Delta-G solvation = 60.018675 kcal Electronic energy + Delta-G solvation = -12274.886350 eV Core-core repulsion = 9988.940866 eV Total energy + Delta-G solvation = -2285.945484 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.15402 -38.23076 -34.97713 -34.31629 -32.38484 -30.43039 -27.85239 -24.28175 -23.50742 -22.16661 -20.47109 -19.25721 -18.07645 -17.62409 -17.14109 -16.98428 -15.65123 -15.08517 -14.19866 -13.99312 -13.80710 -13.38303 -13.30276 -12.91557 -12.80635 -12.39259 -12.06472 -11.48507 -11.39969 -11.17367 -11.01634 -10.38862 -9.10181 -8.91818 -8.75201 -6.36870 0.26191 1.04821 1.31331 1.31821 1.34049 1.47495 1.72964 1.78790 2.15626 2.24582 2.84141 3.28239 3.85402 3.98755 4.39698 4.55540 4.81947 5.00099 5.06058 5.33072 5.39392 5.47055 5.67437 5.91251 6.40529 6.64081 6.79101 7.96408 8.12634 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.013344 C = 0.008680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.789207 B = 2097.753953 C = 3224.933397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.035 3.965 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.251 1.251 6 H -0.264 1.264 7 C -0.429 4.429 8 H 0.085 0.915 9 C 0.087 3.913 10 C -0.125 4.125 11 C -0.206 4.206 12 S 0.024 5.976 13 C -0.366 4.366 14 C 0.116 3.884 15 C -0.272 4.272 16 C -0.047 4.047 17 O 0.058 5.942 18 N -0.420 5.420 19 H 0.297 0.703 20 H 0.141 0.859 21 H 0.176 0.824 22 H 0.178 0.822 23 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 -4.670 -0.779 5.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.175 1.175 6 H -0.188 1.188 7 C -0.462 4.462 8 H 0.103 0.897 9 C 0.075 3.925 10 C -0.157 4.157 11 C -0.341 4.341 12 S 0.281 5.719 13 C -0.484 4.484 14 C -0.040 4.040 15 C -0.293 4.293 16 C -0.127 4.127 17 O 0.001 5.999 18 N -0.135 5.135 19 H 0.108 0.892 20 H 0.158 0.842 21 H 0.194 0.806 22 H 0.196 0.804 23 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 2.841 -4.795 -0.884 5.643 hybrid contribution -0.176 1.290 0.190 1.316 sum 2.664 -3.506 -0.694 4.457 Atomic orbital electron populations 1.69767 1.08693 1.31477 1.33137 1.26939 0.95778 1.04710 0.90879 0.85102 0.79051 0.75460 0.79648 1.18811 1.17505 1.18847 1.19778 0.96758 0.90760 1.38854 0.89742 1.18461 0.91574 0.92518 0.89969 1.21582 0.96455 0.97214 1.00489 1.25367 1.04449 0.96230 1.08018 1.82357 1.14666 1.10981 1.63921 1.21205 1.02943 0.96267 1.28004 1.22505 0.94003 0.89566 0.97894 1.23957 0.98413 0.98498 1.08429 1.26544 0.99627 0.85289 1.01201 1.84571 1.36336 1.20829 1.58185 1.74410 0.99555 1.21529 1.17969 0.89150 0.84154 0.80638 0.80431 0.71948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.32 10.77 21.84 0.24 -40.08 14 2 C 0.04 1.78 5.39 85.25 0.46 2.24 14 3 Si 0.99 39.05 29.57 68.60 2.03 41.08 14 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 14 5 H -0.25 -8.95 7.11 99.48 0.71 -8.24 14 6 H -0.26 -10.69 7.11 99.48 0.71 -9.99 14 7 C -0.43 -24.22 8.68 23.26 0.20 -24.02 14 8 H 0.08 4.95 6.16 -2.91 -0.02 4.93 14 9 C 0.09 4.85 5.69 -20.88 -0.12 4.73 14 10 C -0.13 -6.32 9.05 22.71 0.21 -6.11 14 11 C -0.21 -8.98 11.05 66.69 0.74 -8.25 14 12 S 0.02 1.06 23.11 -56.49 -1.31 -0.25 14 13 C -0.37 -19.36 6.54 24.87 0.16 -19.20 14 14 C 0.12 5.75 7.27 43.84 0.32 6.06 14 15 C -0.27 -10.17 11.28 23.89 0.27 -9.90 14 16 C -0.05 -1.45 12.25 67.11 0.82 -0.63 14 17 O 0.06 2.36 11.09 72.08 0.80 3.16 14 18 N -0.42 -21.05 10.03 -45.96 -0.46 -21.51 14 19 H 0.30 13.16 8.30 -92.71 -0.77 12.39 14 20 H 0.14 7.11 6.33 -2.91 -0.02 7.09 14 21 H 0.18 6.14 8.06 -2.91 -0.02 6.11 14 22 H 0.18 5.67 8.06 -2.91 -0.02 5.65 14 23 H 0.26 4.26 8.06 -2.91 -0.02 4.24 14 Total: -1.00 -65.61 228.04 5.60 -60.01 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.24 Total: 12.67 kcal Atomic # 6 Polarization: -58.13 SS G_CDS: 3.06 Total: -55.08 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.23 Total: -61.59 kcal Atomic # 8 Polarization: 2.36 SS G_CDS: 0.80 Total: 3.16 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -1.31 Total: -0.25 kcal Total: -65.61 5.60 -60.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259644053.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.027 kcal (2) G-P(sol) polarization free energy of solvation -65.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds