Wall clock time and date at job start Mon Mar 30 2020 03:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30920 * 1 3 3 Si 1.86795 * 120.00148 * 2 1 4 4 H 1.48503 * 109.47316 * 274.02236 * 3 2 1 5 5 H 1.48507 * 109.47113 * 34.02046 * 3 2 1 6 6 H 1.48497 * 109.47452 * 154.01912 * 3 2 1 7 7 C 1.39916 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99947 * 341.74898 * 7 2 1 9 9 C 1.40396 * 119.99898 * 161.74801 * 7 2 1 10 10 C 1.44333 * 123.75540 * 335.67653 * 9 7 2 11 11 C 1.32498 * 114.46680 * 180.26742 * 10 9 7 12 12 S 1.75463 * 111.43874 * 359.75328 * 11 10 9 13 13 C 1.39716 * 123.75045 * 155.47997 * 9 7 2 14 14 C 1.41635 * 125.25466 * 0.02562 * 13 9 7 15 15 N 1.32046 * 125.77958 * 359.72167 * 14 13 9 16 16 C 1.33672 * 108.63675 * 179.97438 * 15 14 13 17 17 C 1.35080 * 107.94500 * 0.02562 * 16 15 14 18 18 O 1.34736 * 125.78138 * 179.71755 * 14 13 9 19 19 H 0.96999 * 119.99613 * 359.97438 * 1 2 3 20 20 H 1.08004 * 122.76286 * 0.02562 * 10 9 7 21 21 H 1.08004 * 124.28192 * 179.75424 * 11 10 9 22 22 H 1.08001 * 126.02997 * 179.97438 * 16 15 14 23 23 H 1.08000 * 126.32678 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4057 2.0955 -1.3966 5 1 1.4857 2.6266 0.7834 6 1 3.5807 1.4171 0.6133 7 6 2.0088 -1.2117 -0.0005 8 1 1.5095 -2.1236 0.2920 9 6 3.3597 -1.2421 -0.3814 10 6 3.9736 -0.2569 -1.2391 11 6 5.2586 -0.4670 -1.4842 12 16 5.8400 -1.9075 -0.6684 13 6 4.2605 -2.2274 0.0310 14 6 3.9471 -3.3190 0.8773 15 7 2.7643 -3.5697 1.4080 16 6 2.8537 -4.6811 2.1453 17 6 4.1256 -5.1297 2.0692 18 8 4.8054 -4.2775 1.2772 19 1 -0.4849 0.8401 0.0004 20 1 3.4292 0.5803 -1.6505 21 1 5.8709 0.1681 -2.1073 22 1 2.0510 -5.1392 2.7040 23 1 4.5238 -6.0092 2.5532 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259663421.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:38 Heat of formation + Delta-G solvation = 46.431402 kcal Electronic energy + Delta-G solvation = -12369.200607 eV Core-core repulsion = 10082.665934 eV Total energy + Delta-G solvation = -2286.534673 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.85590 -36.73930 -33.49275 -33.41544 -30.68531 -28.35515 -26.01353 -22.25237 -21.50337 -20.84609 -19.01118 -17.69570 -15.93883 -15.48601 -15.39062 -15.34310 -13.81627 -13.78138 -13.47655 -12.36385 -12.30219 -12.02332 -11.74133 -11.44159 -11.01243 -10.57253 -10.28616 -10.10907 -9.57932 -9.51970 -9.03210 -8.74482 -7.45450 -7.34013 -7.03877 -4.60470 1.61743 2.75980 2.79545 2.81592 2.99768 3.04643 3.32580 3.46255 3.68182 3.99522 4.15938 4.96423 5.51542 5.72552 5.91099 6.14731 6.17090 6.60312 6.80200 6.85246 6.99318 7.13848 7.56566 7.58125 8.13642 8.25467 8.57008 9.08335 9.61989 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.013498 C = 0.009547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.204442 B = 2073.929514 C = 2932.270178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.238 1.238 7 C -0.336 4.336 8 H 0.133 0.867 9 C 0.098 3.902 10 C -0.165 4.165 11 C -0.178 4.178 12 S 0.011 5.989 13 C -0.342 4.342 14 C 0.339 3.661 15 N -0.523 5.523 16 C -0.021 4.021 17 C -0.166 4.166 18 O -0.226 6.226 19 H 0.295 0.705 20 H 0.128 0.872 21 H 0.148 0.852 22 H 0.164 0.836 23 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 0.408 -0.228 4.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.152 4.152 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.161 1.161 7 C -0.366 4.366 8 H 0.150 0.850 9 C 0.087 3.913 10 C -0.198 4.198 11 C -0.313 4.313 12 S 0.268 5.732 13 C -0.461 4.461 14 C 0.145 3.855 15 N -0.252 5.252 16 C -0.163 4.163 17 C -0.237 4.237 18 O -0.118 6.118 19 H 0.106 0.894 20 H 0.146 0.854 21 H 0.165 0.835 22 H 0.182 0.818 23 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 5.392 0.128 -0.235 5.398 hybrid contribution -0.609 0.800 0.127 1.013 sum 4.783 0.928 -0.108 4.873 Atomic orbital electron populations 1.69709 1.08404 1.31473 1.28235 1.26596 0.94979 1.02553 0.91084 0.86389 0.81739 0.78877 0.79325 1.18868 1.20673 1.16141 1.19955 0.91774 0.97349 1.27508 0.84981 1.17818 0.92758 0.89483 0.91242 1.21357 0.94958 1.01288 1.02218 1.24979 0.98853 1.01984 1.05452 1.83154 1.13407 1.24252 1.52345 1.18876 0.96104 1.08114 1.23001 1.21194 0.82225 0.88050 0.94071 1.71060 1.21929 1.16372 1.15886 1.23216 0.96343 0.95266 1.01468 1.24433 0.93620 1.00101 1.05498 1.84506 1.41188 1.32806 1.53349 0.89371 0.85436 0.83483 0.81839 0.79037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.47 13.93 55.55 0.77 -17.70 14 2 C 0.07 1.79 5.47 -17.31 -0.09 1.70 14 3 Si 0.91 18.56 24.52 -169.99 -4.17 14.39 14 4 H -0.26 -4.96 6.61 56.52 0.37 -4.58 14 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 14 6 H -0.24 -5.05 6.75 56.52 0.38 -4.67 14 7 C -0.34 -8.88 9.04 -38.14 -0.34 -9.22 14 8 H 0.13 3.84 6.29 -52.49 -0.33 3.51 14 9 C 0.10 2.48 5.28 -106.14 -0.56 1.92 14 10 C -0.16 -3.62 7.56 -39.10 -0.30 -3.92 14 11 C -0.18 -3.51 11.05 28.82 0.32 -3.19 14 12 S 0.01 0.24 23.18 -107.50 -2.49 -2.25 14 13 C -0.34 -8.69 6.34 -37.73 -0.24 -8.93 14 14 C 0.34 8.69 7.80 -16.16 -0.13 8.57 14 15 N -0.52 -13.38 8.91 -13.23 -0.12 -13.49 14 16 C -0.02 -0.45 11.87 -17.87 -0.21 -0.66 14 17 C -0.17 -3.26 12.19 29.61 0.36 -2.90 14 18 O -0.23 -5.29 10.80 3.28 0.04 -5.26 14 19 H 0.30 6.34 8.30 -40.82 -0.34 6.00 14 20 H 0.13 2.60 4.52 -52.48 -0.24 2.36 14 21 H 0.15 2.31 8.06 -52.48 -0.42 1.88 14 22 H 0.16 2.81 8.06 -52.49 -0.42 2.38 14 23 H 0.19 2.78 8.06 -52.49 -0.42 2.35 14 LS Contribution 221.69 15.07 3.34 3.34 Total: -1.00 -28.60 221.69 -4.84 -33.44 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -1.02 Total: 4.17 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.19 Total: -16.64 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.66 Total: -31.19 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.04 Total: -5.26 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -4.17 Total: 14.39 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.49 Total: -2.25 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -28.60 -4.84 -33.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259663421.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.867 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds