Wall clock time and date at job start Mon Mar 30 2020 03:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36880 * 126.39692 * 2 1 4 4 C 1.34670 * 106.81920 * 180.02562 * 3 2 1 5 5 N 1.34127 * 108.01644 * 359.77879 * 4 3 2 6 6 C 1.30492 * 109.25939 * 0.36897 * 5 4 3 7 7 C 1.50697 * 125.65372 * 179.89288 * 6 5 4 8 8 H 1.09002 * 109.47489 * 179.69509 * 7 6 5 9 9 C 1.50703 * 109.47085 * 299.69664 * 7 6 5 10 10 H 1.08000 * 120.00226 * 359.97438 * 9 7 6 11 11 C 1.37876 * 119.99741 * 180.02562 * 9 7 6 12 12 N 1.31511 * 120.00557 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 119.99840 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47166 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47312 * 119.99543 * 13 11 9 16 16 H 1.48499 * 109.47105 * 239.99737 * 13 11 9 17 17 C 1.53000 * 109.47204 * 59.69299 * 7 6 5 18 18 C 1.52997 * 109.47060 * 65.00067 * 17 7 6 19 19 C 1.52998 * 117.50310 * 243.74949 * 18 17 7 20 20 C 1.52996 * 117.50163 * 175.08923 * 18 17 7 21 21 H 1.08999 * 109.46892 * 269.97600 * 1 2 3 22 22 H 1.09003 * 109.46764 * 29.97242 * 1 2 3 23 23 H 1.08993 * 109.46959 * 149.97602 * 1 2 3 24 24 H 1.07998 * 126.59587 * 0.05629 * 3 2 1 25 25 H 1.07998 * 125.99059 * 180.02562 * 4 3 2 26 26 H 0.96999 * 120.00539 * 180.02562 * 12 11 9 27 27 H 1.09002 * 109.47398 * 185.00236 * 17 7 6 28 28 H 1.09001 * 109.47194 * 305.00417 * 17 7 6 29 29 H 1.09008 * 115.55245 * 29.41643 * 18 17 7 30 30 H 1.09000 * 117.49561 * 359.97438 * 19 18 17 31 31 H 1.09000 * 117.50593 * 145.01245 * 19 18 17 32 32 H 1.09004 * 117.49898 * 214.97822 * 20 18 17 33 33 H 1.09005 * 117.49813 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 -0.0006 5 7 3.5096 -0.6902 0.0040 6 6 2.2664 -1.0870 -0.0005 7 6 1.8019 -2.5205 0.0000 8 1 0.7122 -2.5495 0.0010 9 6 2.3218 -3.2176 -1.2308 10 1 2.9277 -2.6765 -1.9425 11 6 2.0231 -4.5458 -1.4488 12 7 1.2850 -5.2047 -0.5824 13 14 2.6670 -5.4097 -2.9748 14 1 3.4660 -4.4547 -3.7842 15 1 3.5228 -6.5544 -2.5717 16 1 1.5238 -5.9064 -3.7819 17 6 2.3319 -3.2279 1.2489 18 6 1.7060 -2.5992 2.4954 19 6 2.6437 -1.8950 3.4782 20 6 2.0216 -3.2442 3.8464 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3633 -0.8897 -0.5142 24 1 1.9614 2.1345 0.0009 25 1 4.4369 1.2612 -0.0003 26 1 1.0751 -6.1393 -0.7356 27 1 2.0714 -4.2855 1.2056 28 1 3.4158 -3.1222 1.2939 29 1 0.7102 -2.1770 2.3596 30 1 3.7065 -1.8800 3.2369 31 1 2.2648 -1.0098 3.9891 32 1 1.2336 -3.2462 4.5995 33 1 2.6748 -4.1169 3.8471 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259712351.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:19 Heat of formation + Delta-G solvation = 60.281004 kcal Electronic energy + Delta-G solvation = -15193.966038 eV Core-core repulsion = 12834.663909 eV Total energy + Delta-G solvation = -2359.302129 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.71454 -38.49116 -35.72153 -34.65033 -32.76669 -29.23374 -27.64417 -27.42351 -24.11537 -23.15332 -22.05558 -21.25931 -20.09910 -18.31532 -17.84557 -16.51621 -16.38722 -16.08050 -15.48098 -15.02448 -14.53733 -14.14841 -13.92024 -13.62288 -13.37305 -13.07941 -12.93605 -12.68838 -12.37994 -12.24644 -12.13010 -11.81540 -11.36919 -10.91970 -10.57034 -10.53870 -10.33938 -10.28198 -8.95571 -8.10581 -6.22778 1.39196 1.39846 1.44499 1.54600 2.20810 2.42365 2.57910 3.06563 3.15578 3.96509 4.04297 4.12750 4.16746 4.23106 4.26770 4.45509 4.61158 4.72199 4.75664 4.78292 4.85017 5.04741 5.07746 5.23628 5.30696 5.48527 5.61768 5.63808 5.83612 5.98033 6.17975 6.31718 6.60490 6.80140 7.43583 7.60143 8.92809 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.011756 C = 0.009088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.563896 B = 2381.241443 C = 3080.094458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.469 5.469 3 C -0.071 4.071 4 C -0.067 4.067 5 N -0.537 5.537 6 C 0.240 3.760 7 C 0.134 3.866 8 H 0.026 0.974 9 C -0.519 4.519 10 H 0.036 0.964 11 C 0.024 3.976 12 N -0.907 5.907 13 Si 0.951 3.049 14 H -0.279 1.279 15 H -0.278 1.278 16 H -0.273 1.273 17 C -0.060 4.060 18 C -0.150 4.150 19 C -0.173 4.173 20 C -0.173 4.173 21 H 0.086 0.914 22 H 0.112 0.888 23 H 0.074 0.926 24 H 0.208 0.792 25 H 0.179 0.821 26 H 0.265 0.735 27 H 0.076 0.924 28 H 0.022 0.978 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 9.291 4.734 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.151 5.151 3 C -0.203 4.203 4 C -0.215 4.215 5 N -0.256 5.256 6 C -0.023 4.023 7 C 0.113 3.887 8 H 0.043 0.957 9 C -0.558 4.558 10 H 0.055 0.945 11 C -0.176 4.176 12 N -0.546 5.546 13 Si 0.777 3.223 14 H -0.204 1.204 15 H -0.203 1.203 16 H -0.198 1.198 17 C -0.099 4.099 18 C -0.168 4.168 19 C -0.210 4.210 20 C -0.210 4.210 21 H 0.104 0.896 22 H 0.131 0.869 23 H 0.093 0.907 24 H 0.225 0.775 25 H 0.196 0.804 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.041 0.959 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.063 8.634 4.767 10.328 hybrid contribution -0.160 -0.056 -0.913 0.929 sum -3.223 8.578 3.854 9.941 Atomic orbital electron populations 1.22189 0.75559 1.05231 1.04287 1.45626 1.08595 1.06356 1.54523 1.23050 0.90840 0.93384 1.13019 1.22703 0.97828 0.91168 1.09786 1.70165 1.20462 1.12771 1.22205 1.23843 0.85515 0.91747 1.01195 1.17141 0.94756 0.82256 0.94497 0.95652 1.21190 1.32335 0.96091 1.06181 0.94528 1.25540 0.95199 0.97619 0.99232 1.69954 1.38180 1.10294 1.36198 0.85614 0.78354 0.78330 0.80009 1.20423 1.20341 1.19826 1.20966 0.96573 1.01046 0.91325 1.22332 0.99065 1.03995 0.91411 1.22866 0.98183 0.96053 1.03870 1.22983 1.03654 0.95962 0.98376 0.89573 0.86939 0.90747 0.77531 0.80422 0.92584 0.90587 0.95902 0.89234 0.90801 0.88354 0.87197 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.87 10.83 127.77 1.38 3.25 16 2 N -0.47 -17.12 3.15 -537.62 -1.69 -18.82 16 3 C -0.07 -2.25 11.58 83.09 0.96 -1.29 16 4 C -0.07 -2.55 11.87 83.52 0.99 -1.56 16 5 N -0.54 -25.70 11.25 -188.14 -2.12 -27.81 16 6 C 0.24 11.11 5.79 138.13 0.80 11.91 16 7 C 0.13 6.83 2.06 -12.29 -0.03 6.80 16 8 H 0.03 1.33 6.73 -2.39 -0.02 1.31 16 9 C -0.52 -29.72 8.55 25.60 0.22 -29.50 16 10 H 0.04 2.22 7.74 -2.91 -0.02 2.19 16 11 C 0.02 1.31 5.29 84.65 0.45 1.76 16 12 N -0.91 -50.81 11.29 21.45 0.24 -50.57 16 13 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 14 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 C -0.06 -2.98 4.79 30.59 0.15 -2.83 16 18 C -0.15 -5.98 5.18 -10.80 -0.06 -6.03 16 19 C -0.17 -6.05 10.18 30.62 0.31 -5.74 16 20 C -0.17 -5.78 10.25 30.62 0.31 -5.47 16 21 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.07 2.28 7.05 -2.39 -0.02 2.26 16 24 H 0.21 4.40 8.06 -2.91 -0.02 4.38 16 25 H 0.18 5.53 8.06 -2.91 -0.02 5.50 16 26 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 27 H 0.08 4.13 5.95 -2.39 -0.01 4.12 16 28 H 0.02 1.19 7.88 -2.39 -0.02 1.18 16 29 H 0.09 3.45 8.08 -2.38 -0.02 3.43 16 30 H 0.07 2.82 8.03 -2.39 -0.02 2.80 16 31 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 33 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 Total: -1.00 -66.98 279.51 5.03 -61.95 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.08 Total: 17.38 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 5.49 Total: -28.71 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -3.57 Total: -97.20 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.98 5.03 -61.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712351.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.234 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds