Wall clock time and date at job start Mon Mar 30 2020 03:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36883 * 126.39471 * 2 1 4 4 C 1.34666 * 106.81902 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.01957 * 359.77629 * 4 3 2 6 6 C 1.30503 * 109.25550 * 0.37715 * 5 4 3 7 7 C 1.50700 * 125.65126 * 179.89123 * 6 5 4 8 8 H 1.09004 * 109.47115 * 179.68729 * 7 6 5 9 9 C 1.50702 * 109.47207 * 59.68873 * 7 6 5 10 10 H 1.08002 * 120.00299 * 240.00459 * 9 7 6 11 11 C 1.37884 * 119.99942 * 59.72017 * 9 7 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.52996 * 109.47220 * 299.68716 * 7 6 5 18 18 C 1.52996 * 109.47153 * 295.00309 * 17 7 6 19 19 C 1.53006 * 117.49695 * 243.61912 * 18 17 7 20 20 C 1.52995 * 60.00034 * 252.51179 * 19 18 17 21 21 H 1.09004 * 109.46533 * 269.97181 * 1 2 3 22 22 H 1.08999 * 109.47370 * 29.97215 * 1 2 3 23 23 H 1.08995 * 109.46569 * 149.97618 * 1 2 3 24 24 H 1.07997 * 126.59121 * 359.97438 * 3 2 1 25 25 H 1.07997 * 125.99257 * 180.02562 * 4 3 2 26 26 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 27 27 H 1.09005 * 109.46898 * 55.00570 * 17 7 6 28 28 H 1.09000 * 109.47017 * 174.99581 * 17 7 6 29 29 H 1.08993 * 115.55373 * 29.32437 * 18 17 7 30 30 H 1.08998 * 117.49635 * 0.02562 * 19 18 17 31 31 H 1.08990 * 117.49760 * 145.01896 * 19 18 17 32 32 H 1.09007 * 117.49770 * 252.51204 * 20 19 18 33 33 H 1.09006 * 117.52102 * 107.48071 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6506 -0.0006 5 7 3.5096 -0.6901 0.0041 6 6 2.2664 -1.0869 -0.0006 7 6 1.8019 -2.5206 -0.0001 8 1 0.7123 -2.5495 0.0009 9 6 2.3240 -3.2173 1.2300 10 1 2.9679 -4.0786 1.1305 11 6 1.9842 -2.7516 2.4826 12 7 1.2000 -1.7028 2.6037 13 14 2.6375 -3.6106 4.0072 14 1 4.1220 -3.5705 4.0002 15 1 2.1290 -2.9208 5.2201 16 1 2.1804 -5.0235 4.0137 17 6 2.3298 -3.2282 -1.2497 18 6 1.7018 -2.5997 -2.4952 19 6 0.8018 -3.4875 -3.3572 20 6 2.1921 -3.0918 -3.8585 21 1 -0.3632 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3632 -0.8898 -0.5142 24 1 1.9612 2.1345 -0.0004 25 1 4.4368 1.2613 -0.0003 26 1 0.9607 -1.3754 3.4849 27 1 3.4137 -3.1225 -1.2964 28 1 2.0695 -4.2857 -1.2056 29 1 1.4344 -1.5468 -2.4067 30 1 0.6568 -4.5191 -3.0365 31 1 -0.0579 -3.0186 -3.8356 32 1 2.2470 -2.3626 -4.6668 33 1 2.9625 -3.8630 -3.8679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259712355.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:22 Heat of formation + Delta-G solvation = 73.949687 kcal Electronic energy + Delta-G solvation = -15297.939326 eV Core-core repulsion = 12939.229916 eV Total energy + Delta-G solvation = -2358.709410 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.76109 -37.12024 -33.73627 -32.74472 -31.00138 -27.52599 -25.90021 -25.40035 -22.17864 -21.91377 -20.34441 -19.83429 -18.18271 -16.39901 -15.71204 -15.28220 -14.47527 -14.26222 -13.71655 -13.64994 -12.59641 -12.45415 -12.33949 -11.82462 -11.75634 -11.54532 -11.20593 -10.95986 -10.80879 -10.51396 -10.50041 -10.13115 -9.52400 -9.24650 -9.09873 -8.57385 -8.45976 -8.29474 -7.04330 -6.04922 -4.08612 3.30184 3.37545 3.38058 3.42914 4.07195 4.29610 4.42576 4.57817 5.23248 5.30821 5.44232 5.44961 5.56860 5.86100 5.94222 5.95930 6.02849 6.06866 6.29427 6.35874 6.42723 6.47673 6.52162 6.71519 6.87931 6.95376 7.12894 7.48956 7.66037 7.87305 8.02228 8.23248 8.56609 8.93025 9.54149 9.58825 11.02137 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022311 B = 0.012238 C = 0.009575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.709407 B = 2287.497786 C = 2923.695698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.449 5.449 3 C -0.105 4.105 4 C -0.040 4.040 5 N -0.512 5.512 6 C 0.305 3.695 7 C 0.123 3.877 8 H 0.039 0.961 9 C -0.502 4.502 10 H 0.063 0.937 11 C 0.068 3.932 12 N -0.886 5.886 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.290 1.290 16 H -0.277 1.277 17 C -0.072 4.072 18 C -0.137 4.137 19 C -0.187 4.187 20 C -0.188 4.188 21 H 0.079 0.921 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.150 0.850 25 H 0.147 0.853 26 H 0.260 0.740 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 1.816 -7.517 8.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.130 5.130 3 C -0.238 4.238 4 C -0.189 4.189 5 N -0.230 5.230 6 C 0.041 3.959 7 C 0.103 3.897 8 H 0.057 0.943 9 C -0.540 4.540 10 H 0.081 0.919 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.216 1.216 16 H -0.202 1.202 17 C -0.110 4.110 18 C -0.155 4.155 19 C -0.224 4.224 20 C -0.225 4.225 21 H 0.097 0.903 22 H 0.077 0.923 23 H 0.094 0.906 24 H 0.167 0.833 25 H 0.164 0.836 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.555 1.450 -7.369 7.933 hybrid contribution -0.412 0.610 1.122 1.342 sum -2.967 2.060 -6.247 7.216 Atomic orbital electron populations 1.21708 0.78485 1.01600 1.03515 1.45118 1.06649 1.06595 1.54653 1.22157 0.91985 0.91887 1.17765 1.21970 0.95237 0.92505 1.09230 1.70183 1.19823 1.10038 1.22964 1.24147 0.84457 0.91090 0.96179 1.17346 0.96047 0.83201 0.93120 0.94337 1.20909 1.30639 1.13056 0.89407 0.91894 1.24935 0.94646 0.94749 0.99163 1.69861 1.35407 1.23502 1.23551 0.86577 0.79601 0.79421 0.81946 1.20113 1.21551 1.20224 1.21217 1.00186 0.98224 0.91412 1.22500 1.02195 0.98678 0.92107 1.22985 0.93496 1.00695 1.05209 1.22890 0.97517 1.03783 0.98354 0.90259 0.92305 0.90587 0.83296 0.83553 0.93080 0.91438 0.92243 0.88945 0.88973 0.89798 0.89805 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.65 10.83 59.85 0.65 2.30 16 2 N -0.45 -9.90 3.15 -121.28 -0.38 -10.29 16 3 C -0.11 -2.19 11.58 -16.56 -0.19 -2.38 16 4 C -0.04 -0.91 11.87 -17.81 -0.21 -1.12 16 5 N -0.51 -13.20 11.25 -10.82 -0.12 -13.32 16 6 C 0.30 7.50 4.12 -155.42 -0.64 6.86 16 7 C 0.12 3.01 2.11 -92.92 -0.20 2.81 16 8 H 0.04 0.97 6.73 -51.93 -0.35 0.62 16 9 C -0.50 -13.64 8.55 -34.44 -0.29 -13.94 16 10 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 11 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 12 N -0.89 -24.59 12.37 55.43 0.69 -23.90 16 13 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C -0.07 -1.51 4.89 -26.74 -0.13 -1.64 16 18 C -0.14 -2.46 5.53 -90.62 -0.50 -2.96 16 19 C -0.19 -2.79 10.18 -26.73 -0.27 -3.06 16 20 C -0.19 -2.86 10.25 -26.73 -0.27 -3.13 16 21 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.08 1.34 7.05 -51.93 -0.37 0.97 16 24 H 0.15 2.53 8.06 -52.49 -0.42 2.10 16 25 H 0.15 2.82 8.06 -52.49 -0.42 2.40 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.06 1.18 7.88 -51.93 -0.41 0.77 16 29 H 0.09 1.78 7.34 -51.93 -0.38 1.40 16 30 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 280.87 15.07 4.23 4.23 Total: -1.00 -30.40 280.87 -7.61 -38.01 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.85 Total: 3.08 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.16 Total: -14.50 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.18 Total: -47.51 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.40 -7.61 -38.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712355.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.960 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds