Wall clock time and date at job start Mon Mar 30 2020 03:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36883 * 126.39471 * 2 1 4 4 C 1.34666 * 106.81902 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.01957 * 359.77629 * 4 3 2 6 6 C 1.30503 * 109.25550 * 0.37715 * 5 4 3 7 7 C 1.50700 * 125.65126 * 179.89123 * 6 5 4 8 8 H 1.09004 * 109.47115 * 179.68729 * 7 6 5 9 9 C 1.50702 * 109.47207 * 59.68873 * 7 6 5 10 10 H 1.08002 * 120.00299 * 240.00459 * 9 7 6 11 11 C 1.37884 * 119.99942 * 59.72017 * 9 7 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.52996 * 109.47220 * 299.68716 * 7 6 5 18 18 C 1.52996 * 109.47153 * 295.00309 * 17 7 6 19 19 C 1.53006 * 117.49695 * 243.61912 * 18 17 7 20 20 C 1.52995 * 60.00034 * 252.51179 * 19 18 17 21 21 H 1.09004 * 109.46533 * 269.97181 * 1 2 3 22 22 H 1.08999 * 109.47370 * 29.97215 * 1 2 3 23 23 H 1.08995 * 109.46569 * 149.97618 * 1 2 3 24 24 H 1.07997 * 126.59121 * 359.97438 * 3 2 1 25 25 H 1.07997 * 125.99257 * 180.02562 * 4 3 2 26 26 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 27 27 H 1.09005 * 109.46898 * 55.00570 * 17 7 6 28 28 H 1.09000 * 109.47017 * 174.99581 * 17 7 6 29 29 H 1.08993 * 115.55373 * 29.32437 * 18 17 7 30 30 H 1.08998 * 117.49635 * 0.02562 * 19 18 17 31 31 H 1.08990 * 117.49760 * 145.01896 * 19 18 17 32 32 H 1.09007 * 117.49770 * 252.51204 * 20 19 18 33 33 H 1.09006 * 117.52102 * 107.48071 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6506 -0.0006 5 7 3.5096 -0.6901 0.0041 6 6 2.2664 -1.0869 -0.0006 7 6 1.8019 -2.5206 -0.0001 8 1 0.7123 -2.5495 0.0009 9 6 2.3240 -3.2173 1.2300 10 1 2.9679 -4.0786 1.1305 11 6 1.9842 -2.7516 2.4826 12 7 1.2000 -1.7028 2.6037 13 14 2.6375 -3.6106 4.0072 14 1 4.1220 -3.5705 4.0002 15 1 2.1290 -2.9208 5.2201 16 1 2.1804 -5.0235 4.0137 17 6 2.3298 -3.2282 -1.2497 18 6 1.7018 -2.5997 -2.4952 19 6 0.8018 -3.4875 -3.3572 20 6 2.1921 -3.0918 -3.8585 21 1 -0.3632 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3632 -0.8898 -0.5142 24 1 1.9612 2.1345 -0.0004 25 1 4.4368 1.2613 -0.0003 26 1 0.9607 -1.3754 3.4849 27 1 3.4137 -3.1225 -1.2964 28 1 2.0695 -4.2857 -1.2056 29 1 1.4344 -1.5468 -2.4067 30 1 0.6568 -4.5191 -3.0365 31 1 -0.0579 -3.0186 -3.8356 32 1 2.2470 -2.3626 -4.6668 33 1 2.9625 -3.8630 -3.8679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259712355.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:22 Heat of formation + Delta-G solvation = 56.883233 kcal Electronic energy + Delta-G solvation = -15298.679383 eV Core-core repulsion = 12939.229916 eV Total energy + Delta-G solvation = -2359.449467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.48544 -38.50797 -35.61121 -34.41672 -32.89827 -29.22175 -27.50087 -27.28696 -23.95514 -23.13994 -21.96057 -21.41395 -19.92522 -18.32675 -17.46606 -16.87424 -16.22136 -15.92858 -15.30424 -15.08922 -14.31924 -14.25048 -13.96242 -13.46332 -13.35385 -13.25307 -12.90092 -12.61056 -12.38943 -12.20229 -12.13659 -11.80527 -11.35753 -10.85763 -10.62433 -10.50342 -10.36309 -10.04352 -8.79085 -8.10648 -6.20909 1.38436 1.42402 1.47650 1.65292 2.41415 2.48536 2.75165 3.03927 3.22476 3.91626 4.11082 4.16878 4.21578 4.26374 4.41709 4.52806 4.58435 4.77554 4.81715 4.87098 4.91137 5.04494 5.11673 5.18332 5.29299 5.33641 5.49839 5.63452 5.77255 5.94700 6.23418 6.36278 6.71595 6.94290 7.44905 7.81036 8.91949 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022311 B = 0.012238 C = 0.009575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.709407 B = 2287.497786 C = 2923.695698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.454 5.454 3 C -0.091 4.091 4 C -0.070 4.070 5 N -0.554 5.554 6 C 0.287 3.713 7 C 0.123 3.877 8 H 0.026 0.974 9 C -0.522 4.522 10 H 0.053 0.947 11 C 0.025 3.975 12 N -0.899 5.899 13 Si 0.948 3.052 14 H -0.285 1.285 15 H -0.287 1.287 16 H -0.264 1.264 17 C -0.061 4.061 18 C -0.163 4.163 19 C -0.167 4.167 20 C -0.175 4.175 21 H 0.063 0.937 22 H 0.102 0.898 23 H 0.076 0.924 24 H 0.192 0.808 25 H 0.170 0.830 26 H 0.257 0.743 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 2.372 -8.425 9.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.135 5.135 3 C -0.225 4.225 4 C -0.218 4.218 5 N -0.273 5.273 6 C 0.023 3.977 7 C 0.103 3.897 8 H 0.044 0.956 9 C -0.560 4.560 10 H 0.072 0.928 11 C -0.176 4.176 12 N -0.537 5.537 13 Si 0.774 3.226 14 H -0.211 1.211 15 H -0.212 1.212 16 H -0.189 1.189 17 C -0.099 4.099 18 C -0.181 4.181 19 C -0.204 4.204 20 C -0.212 4.212 21 H 0.082 0.918 22 H 0.120 0.880 23 H 0.094 0.906 24 H 0.209 0.791 25 H 0.187 0.813 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.346 1.999 -8.285 9.156 hybrid contribution -0.167 0.477 1.380 1.469 sum -3.513 2.476 -6.905 8.134 Atomic orbital electron populations 1.21870 0.76501 1.03820 1.03129 1.45336 1.08029 1.06329 1.53764 1.22811 0.91300 0.93293 1.15046 1.22489 0.97202 0.91744 1.10353 1.70091 1.20974 1.12102 1.24104 1.23886 0.84772 0.91565 0.97517 1.17252 0.95096 0.83850 0.93509 0.95563 1.21229 1.30551 1.13221 0.91028 0.92848 1.25565 0.95080 0.95513 1.01409 1.69959 1.36015 1.24164 1.23564 0.85773 0.78320 0.79274 0.79211 1.21062 1.21218 1.18876 1.21008 0.98726 0.98282 0.91891 1.22217 1.05392 0.98281 0.92228 1.23085 0.94001 1.00353 1.02976 1.22989 0.97919 1.03748 0.96549 0.91850 0.87967 0.90567 0.79063 0.81257 0.93455 0.93819 0.91924 0.90389 0.88388 0.87723 0.88113 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.13 10.83 127.77 1.38 4.51 16 2 N -0.45 -19.58 3.15 -537.60 -1.69 -21.27 16 3 C -0.09 -3.63 11.58 83.09 0.96 -2.66 16 4 C -0.07 -3.10 11.87 83.52 0.99 -2.11 16 5 N -0.55 -28.85 11.25 -188.14 -2.12 -30.97 16 6 C 0.29 14.20 4.12 138.13 0.57 14.77 16 7 C 0.12 6.13 2.11 -12.29 -0.03 6.11 16 8 H 0.03 1.35 6.73 -2.38 -0.02 1.33 16 9 C -0.52 -29.01 8.55 25.60 0.22 -28.79 16 10 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 11 C 0.02 1.38 5.30 84.66 0.45 1.83 16 12 N -0.90 -50.28 12.37 21.45 0.27 -50.01 16 13 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 14 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 15 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 16 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 17 C -0.06 -2.59 4.89 30.59 0.15 -2.44 16 18 C -0.16 -5.75 5.53 -10.79 -0.06 -5.81 16 19 C -0.17 -4.60 10.18 30.59 0.31 -4.29 16 20 C -0.18 -4.95 10.25 30.59 0.31 -4.64 16 21 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 22 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 23 H 0.08 2.63 7.05 -2.39 -0.02 2.62 16 24 H 0.19 5.74 8.06 -2.91 -0.02 5.72 16 25 H 0.17 6.34 8.06 -2.91 -0.02 6.32 16 26 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 27 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.06 2.53 7.88 -2.39 -0.02 2.51 16 29 H 0.08 2.98 7.34 -2.39 -0.02 2.96 16 30 H 0.10 2.59 8.03 -2.39 -0.02 2.57 16 31 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 Total: -1.00 -65.76 280.87 4.82 -60.94 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 1.08 Total: 17.90 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 5.26 Total: -23.52 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -3.55 Total: -102.25 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.76 4.82 -60.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712355.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.824 kcal (2) G-P(sol) polarization free energy of solvation -65.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds