Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47007 * 2 1 4 4 C 1.53114 * 109.47636 * 120.01629 * 2 1 3 5 5 C 1.53353 * 109.52361 * 190.01507 * 4 2 1 6 6 C 1.50866 * 108.41389 * 310.01186 * 5 4 2 7 7 N 1.33575 * 128.03262 * 196.78092 * 6 5 4 8 8 C 1.30755 * 109.14461 * 179.84026 * 7 6 5 9 9 N 1.35308 * 108.76680 * 0.02562 * 8 7 6 10 10 C 1.46505 * 126.49785 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46917 * 265.02115 * 10 9 8 12 12 H 1.08005 * 120.00250 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99826 * 179.97438 * 11 10 9 14 14 N 1.31504 * 120.00041 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99671 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47228 * 90.00141 * 15 13 11 17 17 H 1.48501 * 109.47062 * 209.99727 * 15 13 11 18 18 H 1.48501 * 109.47549 * 330.00090 * 15 13 11 19 19 C 1.35033 * 123.98400 * 16.66246 * 6 5 4 20 20 C 1.50650 * 124.45209 * 0.17614 * 19 6 5 21 21 H 1.09001 * 109.47002 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.46955 * 300.00995 * 1 2 3 23 23 H 1.09000 * 109.47050 * 60.00823 * 1 2 3 24 24 H 1.08996 * 109.46264 * 310.03016 * 4 2 1 25 25 H 1.09000 * 109.46174 * 69.99194 * 4 2 1 26 26 H 1.09000 * 109.66062 * 190.29102 * 5 4 2 27 27 H 1.08999 * 109.69650 * 69.75407 * 5 4 2 28 28 H 1.08001 * 125.61520 * 179.97438 * 8 7 6 29 29 H 1.08997 * 109.46863 * 25.02199 * 10 9 8 30 30 H 1.09002 * 109.47098 * 145.02261 * 10 9 8 31 31 H 0.97003 * 120.00323 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.68063 * 256.67269 * 20 19 6 33 33 H 1.09000 * 109.70526 * 136.13976 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0406 -0.7221 1.2499 5 6 3.5533 -0.5088 1.3831 6 6 4.1995 -0.8396 0.0606 7 7 5.4886 -1.0876 -0.1863 8 6 5.6412 -1.3350 -1.4611 9 7 4.4352 -1.2493 -2.0686 10 6 4.1602 -1.4553 -3.4928 11 6 4.1660 -0.1262 -4.2029 12 1 4.3560 0.7813 -3.6489 13 6 3.9299 -0.0686 -5.5601 14 7 3.7001 -1.1737 -6.2349 15 14 3.9378 1.5789 -6.4404 16 1 5.3116 1.8783 -6.9182 17 1 3.0113 1.5251 -7.5997 18 1 3.4968 2.6431 -5.5033 19 6 3.5257 -0.9355 -1.1057 20 6 2.0415 -0.7233 -1.2523 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5140 0.8898 23 1 -0.3633 0.5137 -0.8901 24 1 1.5385 -0.3223 2.1309 25 1 1.8301 -1.7882 1.1648 26 1 3.9492 -1.1640 2.1591 27 1 3.7565 0.5306 1.6410 28 1 6.5760 -1.5686 -1.9490 29 1 4.9277 -2.0997 -3.9214 30 1 3.1839 -1.9256 -3.6100 31 1 3.5335 -1.1332 -7.1897 32 1 1.5408 -1.6865 -1.3502 33 1 1.8426 -0.1149 -2.1346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259714103.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = 26.391303 kcal Electronic energy + Delta-G solvation = -14986.795749 eV Core-core repulsion = 12626.024053 eV Total energy + Delta-G solvation = -2360.771696 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.40870 -36.90898 -34.14551 -32.34820 -30.57759 -29.41048 -27.14349 -25.55351 -23.47889 -22.47913 -20.63846 -19.69582 -18.24513 -16.80905 -15.85449 -14.97653 -14.51776 -14.17837 -13.95392 -13.79318 -12.92659 -12.79328 -12.48001 -12.37468 -11.96949 -11.69196 -11.57065 -11.18081 -11.05915 -10.92643 -10.54774 -10.49717 -10.35446 -10.11473 -9.90596 -9.08207 -8.71316 -8.44181 -7.29448 -6.35014 -4.43116 2.97071 3.15701 3.22655 3.27496 3.86837 3.95386 4.24319 4.98636 5.00406 5.05945 5.13772 5.32052 5.69262 5.70723 5.81738 5.85194 5.92972 6.03136 6.07567 6.15710 6.21912 6.28198 6.35409 6.49033 6.55623 6.68979 6.86739 6.91248 7.49063 7.58926 7.66123 7.79794 8.19337 8.65229 8.94531 9.24984 10.73217 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029237 B = 0.008866 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.452327 B = 3157.437116 C = 3705.191958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.024 4.024 6 C -0.029 4.029 7 N -0.506 5.506 8 C 0.163 3.837 9 N -0.417 5.417 10 C 0.232 3.768 11 C -0.541 4.541 12 H 0.065 0.935 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.905 3.095 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.271 1.271 19 C -0.015 4.015 20 C -0.034 4.034 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.194 0.806 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.067 0.933 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 0.783 9.335 10.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.148 4.148 5 C -0.062 4.062 6 C -0.161 4.161 7 N -0.225 5.225 8 C -0.119 4.119 9 N -0.094 5.094 10 C 0.112 3.888 11 C -0.579 4.579 12 H 0.083 0.917 13 C -0.137 4.137 14 N -0.527 5.527 15 Si 0.732 3.268 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.196 1.196 19 C -0.135 4.135 20 C -0.073 4.073 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.211 0.789 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.149 0.663 9.510 10.397 hybrid contribution -0.411 0.763 -1.494 1.728 sum -4.559 1.427 8.015 9.331 Atomic orbital electron populations 1.21816 0.95174 1.01697 1.01515 1.21123 0.95002 0.99876 0.94427 0.90955 1.21635 0.95200 1.00685 0.97242 1.19757 0.93258 1.00731 0.92483 1.20262 0.90148 1.10976 0.94694 1.69825 1.18332 1.20027 1.14359 1.24662 0.90577 1.07811 0.88856 1.45672 1.06931 1.46465 1.10313 1.19753 0.98735 0.98610 0.71652 1.21280 1.50867 0.92434 0.93316 0.91694 1.24943 0.94280 0.97397 0.97084 1.69916 1.46876 1.27061 1.08842 0.86366 0.78249 0.83080 0.79107 1.20241 1.20816 1.19597 1.20780 0.93567 1.09963 0.89190 1.20025 0.88300 1.00472 0.98458 0.92742 0.92814 0.92563 0.91831 0.91943 0.91469 0.91702 0.78934 0.93232 0.93546 0.92185 0.91447 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.17 37.16 0.34 -1.35 16 2 C -0.09 -1.22 2.70 -90.35 -0.24 -1.46 16 3 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 4 C -0.11 -1.46 5.20 -26.49 -0.14 -1.60 16 5 C -0.02 -0.38 6.30 -27.62 -0.17 -0.55 16 6 C -0.03 -0.60 6.98 -82.89 -0.58 -1.18 16 7 N -0.51 -11.04 11.25 -10.74 -0.12 -11.16 16 8 C 0.16 3.49 12.57 -89.92 -1.13 2.36 16 9 N -0.42 -9.45 2.72 -115.26 -0.31 -9.77 16 10 C 0.23 5.71 5.75 -5.19 -0.03 5.68 16 11 C -0.54 -14.43 9.39 -34.44 -0.32 -14.76 16 12 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 13 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -24.52 13.28 55.43 0.74 -23.78 16 15 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C -0.02 -0.32 6.73 -81.85 -0.55 -0.87 16 20 C -0.03 -0.61 5.36 -27.70 -0.15 -0.76 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 25 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.19 3.57 8.06 -52.49 -0.42 3.14 16 29 H 0.05 1.25 8.13 -51.93 -0.42 0.82 16 30 H 0.05 1.18 8.11 -51.93 -0.42 0.76 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 275.47 15.07 4.15 4.15 Total: -1.00 -29.00 275.47 -8.68 -37.68 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.03 Total: 0.04 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -3.07 Total: -12.80 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.30 Total: -44.72 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.00 -8.68 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259714103.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.070 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds