Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47007 * 2 1 4 4 C 1.53114 * 109.47636 * 120.01629 * 2 1 3 5 5 C 1.53353 * 109.52361 * 190.01507 * 4 2 1 6 6 C 1.50866 * 108.41389 * 310.01186 * 5 4 2 7 7 N 1.33575 * 128.03262 * 196.78092 * 6 5 4 8 8 C 1.30755 * 109.14461 * 179.84026 * 7 6 5 9 9 N 1.35308 * 108.76680 * 0.02562 * 8 7 6 10 10 C 1.46505 * 126.49785 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46917 * 265.02115 * 10 9 8 12 12 H 1.08005 * 120.00250 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99826 * 179.97438 * 11 10 9 14 14 N 1.31504 * 120.00041 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99671 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47228 * 90.00141 * 15 13 11 17 17 H 1.48501 * 109.47062 * 209.99727 * 15 13 11 18 18 H 1.48501 * 109.47549 * 330.00090 * 15 13 11 19 19 C 1.35033 * 123.98400 * 16.66246 * 6 5 4 20 20 C 1.50650 * 124.45209 * 0.17614 * 19 6 5 21 21 H 1.09001 * 109.47002 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.46955 * 300.00995 * 1 2 3 23 23 H 1.09000 * 109.47050 * 60.00823 * 1 2 3 24 24 H 1.08996 * 109.46264 * 310.03016 * 4 2 1 25 25 H 1.09000 * 109.46174 * 69.99194 * 4 2 1 26 26 H 1.09000 * 109.66062 * 190.29102 * 5 4 2 27 27 H 1.08999 * 109.69650 * 69.75407 * 5 4 2 28 28 H 1.08001 * 125.61520 * 179.97438 * 8 7 6 29 29 H 1.08997 * 109.46863 * 25.02199 * 10 9 8 30 30 H 1.09002 * 109.47098 * 145.02261 * 10 9 8 31 31 H 0.97003 * 120.00323 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.68063 * 256.67269 * 20 19 6 33 33 H 1.09000 * 109.70526 * 136.13976 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0406 -0.7221 1.2499 5 6 3.5533 -0.5088 1.3831 6 6 4.1995 -0.8396 0.0606 7 7 5.4886 -1.0876 -0.1863 8 6 5.6412 -1.3350 -1.4611 9 7 4.4352 -1.2493 -2.0686 10 6 4.1602 -1.4553 -3.4928 11 6 4.1660 -0.1262 -4.2029 12 1 4.3560 0.7813 -3.6489 13 6 3.9299 -0.0686 -5.5601 14 7 3.7001 -1.1737 -6.2349 15 14 3.9378 1.5789 -6.4404 16 1 5.3116 1.8783 -6.9182 17 1 3.0113 1.5251 -7.5997 18 1 3.4968 2.6431 -5.5033 19 6 3.5257 -0.9355 -1.1057 20 6 2.0415 -0.7233 -1.2523 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5140 0.8898 23 1 -0.3633 0.5137 -0.8901 24 1 1.5385 -0.3223 2.1309 25 1 1.8301 -1.7882 1.1648 26 1 3.9492 -1.1640 2.1591 27 1 3.7565 0.5306 1.6410 28 1 6.5760 -1.5686 -1.9490 29 1 4.9277 -2.0997 -3.9214 30 1 3.1839 -1.9256 -3.6100 31 1 3.5335 -1.1332 -7.1897 32 1 1.5408 -1.6865 -1.3502 33 1 1.8426 -0.1149 -2.1346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259714103.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = 12.131101 kcal Electronic energy + Delta-G solvation = -14987.414118 eV Core-core repulsion = 12626.024053 eV Total energy + Delta-G solvation = -2361.390065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.04598 -38.16073 -36.03150 -34.20119 -31.88234 -30.89478 -29.03896 -26.83159 -25.35550 -23.89370 -21.96484 -21.32515 -19.69637 -18.85605 -17.62745 -16.45456 -16.33440 -15.65321 -15.33698 -15.11520 -14.51391 -14.26822 -14.06457 -13.79189 -13.54207 -13.22069 -13.09858 -12.75710 -12.67439 -12.38425 -12.24967 -11.87070 -11.70915 -11.52479 -11.40418 -10.82949 -10.64193 -10.22562 -8.90925 -8.40133 -6.56569 1.28462 1.34985 1.37775 1.47936 2.19287 2.24362 2.36075 2.92236 3.62726 3.88978 3.94934 3.98063 4.33324 4.41500 4.47025 4.58360 4.67360 4.76392 4.80711 4.86111 4.90016 5.03769 5.05620 5.16347 5.29278 5.31812 5.48849 5.50231 5.56718 5.74796 5.82479 6.05769 6.36655 6.62872 7.15667 7.27922 8.67911 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.029237 B = 0.008866 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.452327 B = 3157.437116 C = 3705.191958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 H 0.064 0.936 4 C -0.102 4.102 5 C -0.025 4.025 6 C -0.035 4.035 7 N -0.521 5.521 8 C 0.149 3.851 9 N -0.432 5.432 10 C 0.249 3.751 11 C -0.555 4.555 12 H 0.050 0.950 13 C 0.025 3.975 14 N -0.916 5.916 15 Si 0.969 3.031 16 H -0.270 1.270 17 H -0.272 1.272 18 H -0.271 1.271 19 C -0.038 4.038 20 C -0.033 4.033 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.213 0.787 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.274 0.726 32 H 0.072 0.928 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.663 1.682 10.432 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 H 0.083 0.917 4 C -0.139 4.139 5 C -0.063 4.063 6 C -0.166 4.166 7 N -0.240 5.240 8 C -0.132 4.132 9 N -0.110 5.110 10 C 0.128 3.872 11 C -0.593 4.593 12 H 0.068 0.932 13 C -0.177 4.177 14 N -0.554 5.554 15 Si 0.793 3.207 16 H -0.195 1.195 17 H -0.197 1.197 18 H -0.196 1.196 19 C -0.156 4.156 20 C -0.071 4.071 21 H 0.080 0.920 22 H 0.097 0.903 23 H 0.069 0.931 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.230 0.770 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.085 1.558 10.631 11.887 hybrid contribution -0.082 0.448 -1.807 1.863 sum -5.167 2.007 8.824 10.421 Atomic orbital electron populations 1.21777 0.92822 1.02508 1.02523 1.21121 0.96871 0.98911 0.93049 0.91710 1.21623 0.93504 1.00817 0.97977 1.19964 0.94683 1.01457 0.90222 1.21071 0.89581 1.09547 0.96438 1.69875 1.19330 1.20526 1.14290 1.25178 0.91071 1.07802 0.89153 1.45664 1.07961 1.47598 1.09781 1.19346 0.97373 0.97521 0.72932 1.21381 1.51479 0.92574 0.93890 0.93150 1.25721 0.93556 1.00824 0.97594 1.69994 1.47145 1.28915 1.09355 0.85387 0.78605 0.78743 0.78003 1.19541 1.19728 1.19606 1.21454 0.94921 1.10106 0.89163 1.20138 0.86727 1.00725 0.99557 0.92040 0.90325 0.93080 0.88191 0.91912 0.90323 0.90764 0.77037 0.94299 0.95114 0.91704 0.90982 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.17 71.98 0.66 -2.20 16 2 C -0.08 -2.15 2.70 -10.62 -0.03 -2.18 16 3 H 0.06 1.83 8.12 -2.39 -0.02 1.81 16 4 C -0.10 -2.39 5.20 30.75 0.16 -2.23 16 5 C -0.03 -0.73 6.30 30.02 0.19 -0.55 16 6 C -0.04 -1.41 6.98 41.61 0.29 -1.12 16 7 N -0.52 -22.61 11.25 -187.89 -2.11 -24.73 16 8 C 0.15 6.48 12.57 180.10 2.26 8.74 16 9 N -0.43 -20.06 2.72 -518.56 -1.41 -21.47 16 10 C 0.25 12.65 5.75 85.63 0.49 13.15 16 11 C -0.56 -30.26 9.39 25.60 0.24 -30.02 16 12 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 13 C 0.02 1.31 5.46 84.66 0.46 1.77 16 14 N -0.92 -50.85 13.28 21.45 0.28 -50.57 16 15 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 C -0.04 -1.61 6.73 41.14 0.28 -1.34 16 20 C -0.03 -1.18 5.36 29.96 0.16 -1.02 16 21 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.10 1.70 8.11 -2.39 -0.02 1.68 16 25 H 0.06 1.50 8.11 -2.39 -0.02 1.48 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.21 7.94 8.06 -2.91 -0.02 7.92 16 29 H 0.04 2.03 8.13 -2.39 -0.02 2.01 16 30 H 0.03 1.64 8.11 -2.39 -0.02 1.62 16 31 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.07 2.45 8.12 -2.39 -0.02 2.43 16 33 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -61.96 275.47 5.02 -56.94 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.07 Total: 12.57 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 5.17 Total: -17.00 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -3.24 Total: -96.76 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -61.96 5.02 -56.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259714103.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.066 kcal (2) G-P(sol) polarization free energy of solvation -61.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds