Wall clock time and date at job start Mon Mar 30 2020 03:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 119.99704 * 2 1 4 4 H 1.08003 * 120.00017 * 162.91352 * 3 2 1 5 5 C 1.38816 * 120.00313 * 343.19104 * 3 2 1 6 6 N 1.31616 * 119.99581 * 344.99931 * 5 3 2 7 7 Si 1.86791 * 120.00116 * 164.99582 * 5 3 2 8 8 H 1.48508 * 109.47339 * 60.00441 * 7 5 3 9 9 H 1.48501 * 109.47044 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47394 * 300.00123 * 7 5 3 11 11 C 1.46500 * 120.00243 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.72729 * 180.64249 * 11 2 1 13 13 C 1.53423 * 109.73427 * 59.99783 * 11 2 1 14 14 C 1.53000 * 109.82303 * 189.68985 * 13 11 2 15 15 C 1.53413 * 109.82594 * 71.93157 * 14 13 11 16 16 C 1.50792 * 108.11990 * 309.35057 * 15 14 13 17 17 C 1.33977 * 128.94980 * 196.64184 * 16 15 14 18 18 N 1.36653 * 108.05554 * 179.77822 * 17 16 15 19 19 H 0.96999 * 125.60254 * 180.02562 * 18 17 16 20 20 C 1.36664 * 108.80096 * 0.06409 * 18 17 16 21 21 C 1.33980 * 108.04894 * 0.05929 * 20 18 17 22 22 H 1.08997 * 109.47107 * 84.93954 * 1 2 3 23 23 H 1.09002 * 109.46955 * 204.94177 * 1 2 3 24 24 H 1.08998 * 109.47503 * 324.93351 * 1 2 3 25 25 H 0.96998 * 119.99907 * 179.97438 * 6 5 3 26 26 H 1.08998 * 109.41037 * 309.79865 * 13 11 2 27 27 H 1.09003 * 109.40913 * 69.64989 * 13 11 2 28 28 H 1.09007 * 109.40942 * 192.04160 * 14 13 11 29 29 H 1.09004 * 109.41337 * 311.81910 * 14 13 11 30 30 H 1.09006 * 109.73207 * 69.01008 * 15 14 13 31 31 H 1.09004 * 109.73314 * 189.69125 * 15 14 13 32 32 H 1.08003 * 125.97006 * 359.79550 * 17 16 15 33 33 H 1.07993 * 125.97496 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1939 1.2066 0.2748 5 6 1.5000 2.3624 -0.3476 6 7 0.3328 2.3152 -0.9541 7 14 2.2823 4.0125 0.0453 8 1 3.5966 4.1128 -0.6389 9 1 1.3948 5.1059 -0.4261 10 1 2.4779 4.1308 1.5126 11 6 2.1975 -1.2687 -0.0006 12 1 3.2700 -1.0743 0.0110 13 6 1.8312 -2.0778 -1.2515 14 6 2.4009 -3.4934 -1.1391 15 6 1.6116 -4.2903 -0.0925 16 6 1.5406 -3.4666 1.1686 17 6 1.2293 -3.8557 2.4123 18 7 1.3012 -2.7621 3.2286 19 1 1.1250 -2.7569 4.1825 20 6 1.6613 -1.6768 2.4803 21 6 1.8129 -2.0793 1.2114 22 1 -0.3633 0.0906 -1.0236 23 1 -0.3633 -0.9318 0.4334 24 1 -0.3634 0.8411 0.5904 25 1 -0.1213 3.1372 -1.1967 26 1 0.7465 -2.1302 -1.3443 27 1 2.2471 -1.5900 -2.1331 28 1 2.3265 -3.9917 -2.1058 29 1 3.4477 -3.4399 -0.8400 30 1 0.6047 -4.4860 -0.4614 31 1 2.1190 -5.2332 0.1118 32 1 0.9676 -4.8584 2.7165 33 1 1.7990 -0.6705 2.8474 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259737442.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:35 Heat of formation + Delta-G solvation = 46.415362 kcal Electronic energy + Delta-G solvation = -15332.429790 eV Core-core repulsion = 12972.526402 eV Total energy + Delta-G solvation = -2359.903388 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.05873 -38.17932 -36.05295 -33.30288 -30.93073 -30.61945 -28.07080 -27.87248 -25.39332 -23.15499 -22.10533 -20.69866 -18.93752 -18.59730 -18.43388 -16.92254 -15.75780 -15.57935 -15.21062 -14.57070 -14.54337 -14.43233 -13.97012 -13.63978 -13.16815 -12.82702 -12.81088 -12.76747 -12.54738 -12.27439 -12.08066 -12.00790 -11.62229 -11.39601 -11.06621 -10.57528 -9.15578 -8.82514 -8.72528 -7.77074 -5.18154 1.46728 1.49284 1.55838 1.59461 2.18485 2.56599 2.70542 3.35327 3.77315 4.12056 4.25069 4.39539 4.48984 4.55437 4.79777 4.80955 4.88892 4.93500 5.05683 5.10463 5.16388 5.28290 5.35567 5.39783 5.58043 5.66525 5.70746 5.73351 5.78869 6.29611 6.35269 6.46949 7.03905 7.21266 7.96882 8.41237 9.27310 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.037501 B = 0.009122 C = 0.008169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.469530 B = 3068.876806 C = 3426.973859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.200 3.800 2 N -0.605 5.605 3 C -0.255 4.255 4 H 0.070 0.930 5 C -0.060 4.060 6 N -0.943 5.943 7 Si 0.968 3.032 8 H -0.277 1.277 9 H -0.296 1.296 10 H -0.280 1.280 11 C 0.238 3.762 12 H 0.049 0.951 13 C -0.119 4.119 14 C -0.104 4.104 15 C -0.037 4.037 16 C -0.192 4.192 17 C -0.005 4.005 18 N -0.560 5.560 19 H 0.426 0.574 20 C -0.008 4.008 21 C -0.185 4.185 22 H -0.007 1.007 23 H 0.014 0.986 24 H 0.015 0.985 25 H 0.245 0.755 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.196 0.804 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.290 -13.753 6.498 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.327 5.327 3 C -0.385 4.385 4 H 0.088 0.912 5 C -0.254 4.254 6 N -0.591 5.591 7 Si 0.797 3.203 8 H -0.203 1.203 9 H -0.222 1.222 10 H -0.206 1.206 11 C 0.131 3.869 12 H 0.067 0.933 13 C -0.158 4.158 14 C -0.142 4.142 15 C -0.075 4.075 16 C -0.199 4.199 17 C -0.135 4.135 18 N -0.157 5.157 19 H 0.264 0.736 20 C -0.138 4.138 21 C -0.193 4.193 22 H 0.011 0.989 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.213 0.787 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.168 -13.603 6.610 15.279 hybrid contribution 0.009 1.581 0.313 1.612 sum 2.177 -12.022 6.922 14.043 Atomic orbital electron populations 1.20214 0.83075 0.94743 0.96485 1.44156 1.01768 1.01042 1.85737 1.19584 0.95307 0.85818 1.37798 0.91186 1.25646 0.98336 1.01266 1.00111 1.70293 1.17924 1.26404 1.44470 0.85317 0.77432 0.79604 0.77975 1.20282 1.22213 1.20593 1.18889 0.93687 0.83653 0.90699 0.93313 1.21927 0.99807 0.96364 0.97723 1.21471 0.99447 0.93907 0.99374 1.19997 0.99933 0.96840 0.90715 1.19761 1.10192 0.94009 0.95945 1.21731 1.08887 0.93091 0.89799 1.41986 1.55887 1.07109 1.10726 0.73583 1.21217 1.08443 0.92186 0.92002 1.20178 1.09137 0.95167 0.94819 0.98917 0.96775 0.96634 0.94529 0.94084 0.94439 0.90670 0.92241 0.91724 0.89340 0.78681 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.80 7.85 127.77 1.00 11.80 16 2 N -0.61 -32.16 2.73 -706.02 -1.92 -34.08 16 3 C -0.25 -14.60 9.67 84.03 0.81 -13.79 16 4 H 0.07 3.89 7.78 -2.91 -0.02 3.87 16 5 C -0.06 -3.47 5.08 84.86 0.43 -3.03 16 6 N -0.94 -58.10 10.47 21.65 0.23 -57.88 16 7 Si 0.97 46.60 29.58 68.60 2.03 48.63 16 8 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 9 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 11 C 0.24 10.63 2.96 44.42 0.13 10.76 16 12 H 0.05 2.26 7.84 -2.39 -0.02 2.24 16 13 C -0.12 -4.74 5.30 30.74 0.16 -4.58 16 14 C -0.10 -3.10 5.85 30.73 0.18 -2.92 16 15 C -0.04 -0.99 6.30 30.02 0.19 -0.80 16 16 C -0.19 -6.04 5.92 -20.01 -0.12 -6.15 16 17 C -0.01 -0.13 11.91 82.97 0.99 0.86 16 18 N -0.56 -14.63 6.10 -195.34 -1.19 -15.82 16 19 H 0.43 7.78 8.96 -92.71 -0.83 6.95 16 20 C -0.01 -0.28 11.76 82.97 0.98 0.70 16 21 C -0.18 -7.16 4.50 -20.01 -0.09 -7.25 16 22 H -0.01 -0.44 7.50 -2.39 -0.02 -0.46 16 23 H 0.01 0.69 7.24 -2.39 -0.02 0.67 16 24 H 0.01 0.88 6.96 -2.39 -0.02 0.86 16 25 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.04 1.75 7.35 -2.39 -0.02 1.73 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 30 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.20 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.15 5.56 8.06 -2.91 -0.02 5.54 16 Total: -1.00 -68.53 266.01 4.07 -64.46 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.26 Total: 9.09 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 4.67 Total: -14.40 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -2.89 Total: -107.78 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -68.53 4.07 -64.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737442.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.878 kcal (2) G-P(sol) polarization free energy of solvation -68.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds