Wall clock time and date at job start Mon Mar 30 2020 03:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40301 * 126.09054 * 2 1 4 4 C 1.31069 * 108.27189 * 179.91260 * 3 2 1 5 5 C 1.39294 * 108.07856 * 0.02562 * 4 3 2 6 6 C 1.34323 * 126.09349 * 179.97438 * 2 1 3 7 7 C 1.50819 * 128.03431 * 0.24673 * 6 2 1 8 8 C 1.53363 * 108.38375 * 163.32635 * 7 6 2 9 9 H 1.09007 * 109.46335 * 289.93374 * 8 7 6 10 10 C 1.52998 * 109.46984 * 169.94436 * 8 7 6 11 11 C 1.50699 * 109.47450 * 174.99575 * 10 8 7 12 12 H 1.08004 * 119.99762 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00257 * 179.97438 * 11 10 8 14 14 N 1.31512 * 119.99940 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99703 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47213 * 89.99897 * 15 13 11 17 17 H 1.48507 * 109.46552 * 209.99853 * 15 13 11 18 18 H 1.48498 * 109.47119 * 329.99753 * 15 13 11 19 19 C 1.53234 * 109.50836 * 49.95858 * 8 7 6 20 20 C 1.50837 * 127.90087 * 180.08294 * 5 4 3 21 21 H 1.08998 * 109.47163 * 270.02278 * 1 2 3 22 22 H 1.08992 * 109.47428 * 30.02139 * 1 2 3 23 23 H 1.09004 * 109.46992 * 150.02301 * 1 2 3 24 24 H 1.07997 * 125.96245 * 180.02562 * 4 3 2 25 25 H 1.09006 * 109.68084 * 283.04578 * 7 6 2 26 26 H 1.08996 * 109.68769 * 43.59702 * 7 6 2 27 27 H 1.09001 * 109.46809 * 295.00093 * 10 8 7 28 28 H 1.09009 * 109.46828 * 54.99943 * 10 8 7 29 29 H 0.97003 * 119.99631 * 179.97438 * 14 13 11 30 30 H 1.09001 * 109.50556 * 169.71387 * 19 8 7 31 31 H 1.09007 * 109.47412 * 49.70448 * 19 8 7 32 32 H 1.09002 * 109.68155 * 283.17176 * 20 5 4 33 33 H 1.08999 * 109.68240 * 43.68793 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1338 0.0000 4 6 3.5393 0.7327 0.0019 5 6 3.5456 -0.6603 0.0026 6 6 2.2563 -1.0854 0.0005 7 6 1.8438 -2.5361 -0.0040 8 6 3.0540 -3.3818 -0.4191 9 1 3.2701 -3.2133 -1.4742 10 6 2.7433 -4.8626 -0.1923 11 6 3.8823 -5.7005 -0.7135 12 1 4.7421 -5.2244 -1.1613 13 6 3.8272 -7.0748 -0.6177 14 7 4.8215 -7.8059 -1.0721 15 14 2.3404 -7.8982 0.1575 16 1 1.3272 -8.1790 -0.8912 17 1 2.7574 -9.1721 0.7967 18 1 1.7548 -6.9981 1.1832 19 6 4.2708 -2.9813 0.4218 20 6 4.7400 -1.5814 0.0064 21 1 -0.3633 0.0004 1.0276 22 1 -0.3634 0.8897 -0.5141 23 1 -0.3633 -0.8902 -0.5135 24 1 4.4105 1.3708 0.0028 25 1 1.5171 -2.8279 0.9942 26 1 1.0310 -2.6845 -0.7148 27 1 2.6143 -5.0476 0.8741 28 1 1.8268 -5.1265 -0.7203 29 1 4.7829 -8.7728 -1.0043 30 1 5.0766 -3.6973 0.2601 31 1 3.9971 -2.9749 1.4770 32 1 5.1763 -1.6209 -0.9917 33 1 5.4819 -1.2176 0.7172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259757965.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:15 Heat of formation + Delta-G solvation = 54.609141 kcal Electronic energy + Delta-G solvation = -14815.049656 eV Core-core repulsion = 12455.501577 eV Total energy + Delta-G solvation = -2359.548079 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.24309 -36.76095 -33.60396 -32.72722 -30.64509 -29.72279 -27.09795 -26.41685 -23.10108 -22.17156 -20.74831 -19.70530 -18.26140 -16.72905 -16.35318 -15.50247 -14.45095 -14.05582 -13.81451 -13.57922 -13.19702 -13.11203 -12.65409 -12.52927 -12.20873 -12.01756 -11.84942 -11.29990 -11.00601 -10.71285 -10.27671 -10.09745 -9.77030 -9.69449 -9.49763 -9.08680 -9.02511 -8.53110 -7.90742 -6.03573 -4.00874 2.08585 2.67223 3.05063 3.29675 3.37801 3.40263 4.45018 4.64901 4.90361 5.11280 5.23504 5.28929 5.32302 5.35711 5.49625 5.65345 5.79158 5.94463 5.97094 6.14371 6.23003 6.28840 6.48664 6.74504 6.80599 6.90446 6.91287 7.08747 7.23104 7.30594 7.44083 7.79707 7.91735 8.55004 9.02064 9.59055 11.09703 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.044865 B = 0.007185 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.945239 B = 3895.982052 C = 4399.593936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.375 5.375 3 N -0.316 5.316 4 C 0.050 3.950 5 C -0.237 4.237 6 C 0.094 3.906 7 C -0.056 4.056 8 C -0.064 4.064 9 H 0.068 0.932 10 C -0.009 4.009 11 C -0.515 4.515 12 H 0.075 0.925 13 C 0.066 3.934 14 N -0.904 5.904 15 Si 0.877 3.123 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.108 4.108 20 C -0.041 4.041 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.179 0.821 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.017 0.983 28 H 0.011 0.989 29 H 0.262 0.738 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.595 13.028 3.041 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.157 5.157 3 N -0.137 5.137 4 C -0.134 4.134 5 C -0.248 4.248 6 C -0.034 4.034 7 C -0.095 4.095 8 C -0.083 4.083 9 H 0.086 0.914 10 C -0.047 4.047 11 C -0.553 4.553 12 H 0.094 0.906 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.705 3.295 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.145 4.145 20 C -0.080 4.080 21 H 0.089 0.911 22 H 0.103 0.897 23 H 0.104 0.896 24 H 0.196 0.804 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.035 0.965 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.490 13.874 3.023 16.054 hybrid contribution -0.332 -1.158 0.362 1.258 sum -7.821 12.716 3.385 15.308 Atomic orbital electron populations 1.21774 0.74929 1.04172 1.03040 1.48158 1.06171 1.03721 1.57656 1.77403 1.01613 1.07855 1.26839 1.23533 0.95020 0.94736 1.00140 1.20057 0.94730 0.93521 1.16488 1.21201 0.91066 0.90835 1.00331 1.20600 1.00258 0.86482 1.02133 1.21068 0.92013 0.95603 0.99631 0.91395 1.19629 0.97227 0.91127 0.96691 1.21121 1.04165 0.90844 1.39127 0.90649 1.25022 0.95884 0.97517 0.95088 1.69911 1.31661 1.05585 1.47112 0.86825 0.83605 0.78995 0.80113 1.20431 1.21475 1.19056 1.21642 0.99144 0.94992 0.98741 1.20065 0.93291 0.93615 1.01008 0.91074 0.89662 0.89575 0.80443 0.90271 0.90988 0.96468 0.97083 0.92800 0.89620 0.92976 0.91604 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 11.32 59.85 0.68 1.74 16 2 N -0.38 -5.63 4.00 -63.88 -0.26 -5.89 16 3 N -0.32 -5.09 12.59 30.54 0.38 -4.70 16 4 C 0.05 0.75 12.00 -17.48 -0.21 0.54 16 5 C -0.24 -3.83 5.91 -105.05 -0.62 -4.45 16 6 C 0.09 1.51 6.73 -82.33 -0.55 0.95 16 7 C -0.06 -0.89 5.20 -27.64 -0.14 -1.03 16 8 C -0.06 -1.22 2.11 -90.31 -0.19 -1.41 16 9 H 0.07 1.36 8.11 -51.92 -0.42 0.94 16 10 C -0.01 -0.21 3.51 -27.88 -0.10 -0.31 16 11 C -0.51 -14.05 8.81 -34.44 -0.30 -14.35 16 12 H 0.08 2.21 7.37 -52.48 -0.39 1.82 16 13 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 15 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 19 C -0.11 -1.95 5.14 -26.41 -0.14 -2.08 16 20 C -0.04 -0.65 6.28 -27.62 -0.17 -0.82 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.09 0.75 7.57 -51.93 -0.39 0.36 16 24 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 25 H 0.08 1.21 8.12 -51.93 -0.42 0.78 16 26 H 0.07 1.04 7.76 -51.93 -0.40 0.63 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 28 H 0.01 0.25 7.57 -51.92 -0.39 -0.15 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.73 6.72 -51.93 -0.35 1.38 16 31 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 268.73 15.07 4.05 4.05 Total: -1.00 -31.57 268.73 -6.41 -37.98 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.84 Total: -1.96 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.85 Total: -19.45 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.90 Total: -37.19 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.57 -6.41 -37.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259757965.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.588 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds