Wall clock time and date at job start Mon Mar 30 2020 03:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40301 * 126.09054 * 2 1 4 4 C 1.31069 * 108.27189 * 179.91260 * 3 2 1 5 5 C 1.39294 * 108.07856 * 0.02562 * 4 3 2 6 6 C 1.34323 * 126.09349 * 179.97438 * 2 1 3 7 7 C 1.50819 * 128.03431 * 0.24673 * 6 2 1 8 8 C 1.53363 * 108.38375 * 163.32635 * 7 6 2 9 9 H 1.09007 * 109.46335 * 289.93374 * 8 7 6 10 10 C 1.52998 * 109.46984 * 169.94436 * 8 7 6 11 11 C 1.50699 * 109.47450 * 174.99575 * 10 8 7 12 12 H 1.08004 * 119.99762 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00257 * 179.97438 * 11 10 8 14 14 N 1.31512 * 119.99940 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99703 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47213 * 89.99897 * 15 13 11 17 17 H 1.48507 * 109.46552 * 209.99853 * 15 13 11 18 18 H 1.48498 * 109.47119 * 329.99753 * 15 13 11 19 19 C 1.53234 * 109.50836 * 49.95858 * 8 7 6 20 20 C 1.50837 * 127.90087 * 180.08294 * 5 4 3 21 21 H 1.08998 * 109.47163 * 270.02278 * 1 2 3 22 22 H 1.08992 * 109.47428 * 30.02139 * 1 2 3 23 23 H 1.09004 * 109.46992 * 150.02301 * 1 2 3 24 24 H 1.07997 * 125.96245 * 180.02562 * 4 3 2 25 25 H 1.09006 * 109.68084 * 283.04578 * 7 6 2 26 26 H 1.08996 * 109.68769 * 43.59702 * 7 6 2 27 27 H 1.09001 * 109.46809 * 295.00093 * 10 8 7 28 28 H 1.09009 * 109.46828 * 54.99943 * 10 8 7 29 29 H 0.97003 * 119.99631 * 179.97438 * 14 13 11 30 30 H 1.09001 * 109.50556 * 169.71387 * 19 8 7 31 31 H 1.09007 * 109.47412 * 49.70448 * 19 8 7 32 32 H 1.09002 * 109.68155 * 283.17176 * 20 5 4 33 33 H 1.08999 * 109.68240 * 43.68793 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1338 0.0000 4 6 3.5393 0.7327 0.0019 5 6 3.5456 -0.6603 0.0026 6 6 2.2563 -1.0854 0.0005 7 6 1.8438 -2.5361 -0.0040 8 6 3.0540 -3.3818 -0.4191 9 1 3.2701 -3.2133 -1.4742 10 6 2.7433 -4.8626 -0.1923 11 6 3.8823 -5.7005 -0.7135 12 1 4.7421 -5.2244 -1.1613 13 6 3.8272 -7.0748 -0.6177 14 7 4.8215 -7.8059 -1.0721 15 14 2.3404 -7.8982 0.1575 16 1 1.3272 -8.1790 -0.8912 17 1 2.7574 -9.1721 0.7967 18 1 1.7548 -6.9981 1.1832 19 6 4.2708 -2.9813 0.4218 20 6 4.7400 -1.5814 0.0064 21 1 -0.3633 0.0004 1.0276 22 1 -0.3634 0.8897 -0.5141 23 1 -0.3633 -0.8902 -0.5135 24 1 4.4105 1.3708 0.0028 25 1 1.5171 -2.8279 0.9942 26 1 1.0310 -2.6845 -0.7148 27 1 2.6143 -5.0476 0.8741 28 1 1.8268 -5.1265 -0.7203 29 1 4.7829 -8.7728 -1.0043 30 1 5.0766 -3.6973 0.2601 31 1 3.9971 -2.9749 1.4770 32 1 5.1763 -1.6209 -0.9917 33 1 5.4819 -1.2176 0.7172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259757965.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:14 Heat of formation + Delta-G solvation = 35.338836 kcal Electronic energy + Delta-G solvation = -14815.885279 eV Core-core repulsion = 12455.501577 eV Total energy + Delta-G solvation = -2360.383702 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.40384 -38.22112 -34.92754 -34.49959 -32.26298 -30.95331 -28.75540 -27.42363 -24.79390 -23.59693 -21.92675 -21.18843 -19.62495 -18.77545 -17.50362 -16.64698 -16.22338 -15.33349 -15.15110 -15.03949 -14.77697 -14.32614 -14.09988 -13.75182 -13.55729 -13.33947 -13.17042 -12.84542 -12.56831 -12.41257 -11.83686 -11.69208 -11.37449 -11.32046 -11.14644 -10.97119 -10.67552 -10.14837 -9.09160 -8.21557 -6.23729 0.92901 1.39667 1.41796 1.52913 1.66717 1.87744 2.41631 3.14055 3.68138 3.70586 3.99811 4.06211 4.32925 4.38347 4.41421 4.53027 4.61020 4.66926 4.72009 4.79764 4.91584 5.00016 5.03334 5.25421 5.30345 5.40803 5.51235 5.60066 5.72797 5.75707 5.82254 6.17158 6.38920 6.77363 6.84153 7.39591 8.95078 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.044865 B = 0.007185 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.945239 B = 3895.982052 C = 4399.593936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.375 5.375 3 N -0.335 5.335 4 C 0.049 3.951 5 C -0.257 4.257 6 C 0.084 3.916 7 C -0.045 4.045 8 C -0.060 4.060 9 H 0.050 0.950 10 C -0.006 4.006 11 C -0.517 4.517 12 H 0.036 0.964 13 C 0.001 3.999 14 N -0.955 5.955 15 Si 0.946 3.054 16 H -0.269 1.269 17 H -0.290 1.290 18 H -0.242 1.242 19 C -0.104 4.104 20 C -0.033 4.033 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.103 0.897 24 H 0.206 0.794 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.023 0.977 28 H 0.021 0.979 29 H 0.263 0.737 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 14.105 4.064 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.157 5.157 3 N -0.157 5.157 4 C -0.135 4.135 5 C -0.268 4.268 6 C -0.045 4.045 7 C -0.084 4.084 8 C -0.080 4.080 9 H 0.069 0.931 10 C -0.043 4.043 11 C -0.555 4.555 12 H 0.054 0.946 13 C -0.195 4.195 14 N -0.596 5.596 15 Si 0.770 3.230 16 H -0.194 1.194 17 H -0.216 1.216 18 H -0.166 1.166 19 C -0.142 4.142 20 C -0.071 4.071 21 H 0.106 0.894 22 H 0.115 0.885 23 H 0.122 0.878 24 H 0.222 0.778 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.789 14.985 4.047 18.351 hybrid contribution 0.439 -1.448 -0.004 1.513 sum -9.350 13.538 4.043 16.942 Atomic orbital electron populations 1.22161 0.72488 1.05683 1.04609 1.48490 1.07602 1.02914 1.56708 1.77368 1.02197 1.08685 1.27482 1.23956 0.95669 0.94583 0.99245 1.20195 0.94824 0.94215 1.17573 1.21212 0.91465 0.91150 1.00701 1.20430 0.98865 0.85820 1.03263 1.20916 0.94038 0.94117 0.98895 0.93124 1.19574 0.95513 0.92677 0.96570 1.21458 1.04434 0.91494 1.38150 0.94557 1.25993 0.99222 0.98401 0.95923 1.70079 1.34312 1.05928 1.49306 0.85719 0.79591 0.77911 0.79778 1.19393 1.21602 1.16572 1.21546 0.97897 0.95790 0.98970 1.19947 0.93874 0.92131 1.01175 0.89436 0.88502 0.87837 0.77780 0.89004 0.89102 0.95881 0.96067 0.92799 0.92844 0.92403 0.92119 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.57 11.32 127.77 1.45 3.02 16 2 N -0.38 -10.26 4.00 -356.02 -1.43 -11.68 16 3 N -0.34 -10.05 12.59 -57.28 -0.72 -10.77 16 4 C 0.05 1.37 12.00 85.06 1.02 2.39 16 5 C -0.26 -7.86 5.91 -20.14 -0.12 -7.98 16 6 C 0.08 2.51 6.73 41.64 0.28 2.79 16 7 C -0.05 -1.31 5.20 30.01 0.16 -1.15 16 8 C -0.06 -2.25 2.11 -10.59 -0.02 -2.27 16 9 H 0.05 2.04 8.11 -2.38 -0.02 2.02 16 10 C -0.01 -0.26 3.51 29.85 0.10 -0.16 16 11 C -0.52 -28.82 8.81 25.60 0.23 -28.60 16 12 H 0.04 2.24 7.37 -2.91 -0.02 2.22 16 13 C 0.00 0.03 5.47 84.65 0.46 0.50 16 14 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 15 Si 0.95 43.22 27.47 68.60 1.88 45.10 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 18 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 19 C -0.10 -3.77 5.14 30.80 0.16 -3.61 16 20 C -0.03 -1.01 6.28 30.02 0.19 -0.82 16 21 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.10 1.42 7.57 -2.39 -0.02 1.41 16 24 H 0.21 4.24 8.06 -2.91 -0.02 4.21 16 25 H 0.09 2.47 8.12 -2.38 -0.02 2.45 16 26 H 0.09 2.30 7.76 -2.39 -0.02 2.28 16 27 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 28 H 0.02 0.89 7.57 -2.38 -0.02 0.88 16 29 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.05 2.24 6.72 -2.39 -0.02 2.23 16 31 H 0.06 1.99 8.11 -2.38 -0.02 1.97 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -68.56 268.73 4.96 -63.59 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.03 Total: 8.89 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 3.90 Total: -35.90 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -1.85 Total: -81.68 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Total: -68.56 4.96 -63.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259757965.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.930 kcal (2) G-P(sol) polarization free energy of solvation -68.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds