Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.65965 * 2 1 4 4 C 1.54346 * 110.74648 * 236.60045 * 2 1 3 5 5 C 1.51190 * 105.27113 * 268.29200 * 4 2 1 6 6 C 1.34879 * 143.18912 * 162.76714 * 5 4 2 7 7 N 1.36325 * 108.22028 * 179.97438 * 6 5 4 8 8 H 0.97006 * 125.63895 * 180.02562 * 7 6 5 9 9 C 1.36337 * 108.72900 * 359.97438 * 7 6 5 10 10 C 1.34881 * 108.21936 * 0.02562 * 9 7 6 11 11 C 1.51181 * 143.18940 * 179.97438 * 10 9 7 12 12 C 1.50700 * 110.28638 * 316.18722 * 11 10 9 13 13 H 1.07998 * 119.99842 * 358.73089 * 12 11 10 14 14 C 1.37879 * 120.00192 * 178.73423 * 12 11 10 15 15 N 1.31521 * 119.99872 * 4.87540 * 14 12 11 16 16 Si 1.86795 * 120.00095 * 184.88158 * 14 12 11 17 17 H 1.48504 * 109.47280 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47388 * 119.99912 * 16 14 12 19 19 H 1.48504 * 109.47172 * 239.99967 * 16 14 12 20 20 C 1.53003 * 110.36515 * 78.24688 * 11 10 9 21 21 N 1.46894 * 109.46936 * 290.66984 * 20 11 10 22 22 H 1.08996 * 109.47499 * 302.90067 * 1 2 3 23 23 H 1.09002 * 109.47354 * 62.90679 * 1 2 3 24 24 H 1.09006 * 109.46923 * 182.90310 * 1 2 3 25 25 H 1.09005 * 110.28204 * 27.23996 * 4 2 1 26 26 H 1.09002 * 110.28102 * 149.33688 * 4 2 1 27 27 H 1.08000 * 125.88840 * 359.96401 * 6 5 4 28 28 H 1.07996 * 125.88798 * 180.02562 * 9 7 6 29 29 H 0.97000 * 119.99692 * 179.97438 * 15 14 12 30 30 H 1.09007 * 109.46961 * 50.66652 * 20 11 10 31 31 H 1.08993 * 109.47238 * 170.66651 * 20 11 10 32 32 H 1.00895 * 111.00221 * 66.13219 * 21 20 11 33 33 H 1.00906 * 111.00213 * 190.08717 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0767 -0.7945 -1.2050 5 6 2.2584 -2.2082 -0.7005 6 6 2.4225 -3.4853 -1.1020 7 7 2.5242 -4.2712 0.0073 8 1 2.6483 -5.2332 0.0089 9 6 2.4237 -3.4813 1.1140 10 6 2.2592 -2.2056 0.7081 11 6 2.0772 -0.7904 1.2077 12 6 1.0874 -0.7605 2.3437 13 1 0.6103 -1.6734 2.6683 14 6 0.7909 0.4322 2.9686 15 7 1.2974 1.5571 2.5128 16 14 -0.3301 0.4504 4.4627 17 1 -0.7651 -0.9353 4.7722 18 1 0.4041 1.0106 5.6256 19 1 -1.5210 1.2906 4.1779 20 6 3.4185 -0.2083 1.6586 21 7 3.8620 -0.8906 2.8815 22 1 -0.3634 0.5582 0.8628 23 1 -0.3634 0.4680 -0.9149 24 1 -0.3633 -1.0264 0.0521 25 1 1.3604 -0.7756 -2.0265 26 1 3.0330 -0.3822 -1.5269 27 1 2.4657 -3.8265 -2.1258 28 1 2.4682 -3.8189 2.1388 29 1 1.0885 2.3963 2.9522 30 1 4.1598 -0.3528 0.8727 31 1 3.3035 0.8570 1.8582 32 1 4.0719 -1.8604 2.6987 33 1 4.6551 -0.4199 3.2909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259767343.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = 57.410451 kcal Electronic energy + Delta-G solvation = -15783.815181 eV Core-core repulsion = 13424.388576 eV Total energy + Delta-G solvation = -2359.426605 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.63980 -36.73599 -32.86316 -31.82394 -29.29159 -28.64526 -26.36504 -25.56521 -23.87945 -21.22184 -19.86932 -18.58069 -17.71325 -16.74700 -15.37982 -14.50529 -14.33802 -13.84353 -13.45735 -12.96769 -12.81889 -12.35209 -12.17358 -11.86552 -11.48987 -11.43774 -10.76319 -10.52577 -10.33441 -10.12509 -9.94343 -9.53938 -9.33903 -9.03008 -8.60907 -8.02536 -7.47944 -7.29608 -7.04304 -5.71805 -3.67448 3.05569 3.46522 3.54584 3.58746 3.97004 4.03175 4.69212 5.52561 5.66291 5.80628 5.95155 6.06746 6.25634 6.39162 6.52189 6.68762 6.73393 6.87412 7.02302 7.07891 7.14446 7.34233 7.37932 7.68233 7.71617 7.87721 7.90496 8.02275 8.12354 8.28141 8.40608 8.50775 8.70794 8.83074 9.24043 9.91255 11.35252 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.012147 C = 0.011352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.959290 B = 2304.601065 C = 2465.946974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.059 4.059 3 H 0.071 0.929 4 C -0.045 4.045 5 C -0.197 4.197 6 C -0.025 4.025 7 N -0.572 5.572 8 H 0.405 0.595 9 C -0.026 4.026 10 C -0.124 4.124 11 C 0.145 3.855 12 C -0.453 4.453 13 H 0.048 0.952 14 C 0.071 3.929 15 N -0.894 5.894 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.292 1.292 20 C 0.088 3.912 21 N -0.822 5.822 22 H 0.073 0.927 23 H 0.012 0.988 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.253 0.747 30 H -0.025 1.025 31 H 0.096 0.904 32 H 0.317 0.683 33 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -6.644 -5.104 9.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.079 4.079 3 H 0.090 0.910 4 C -0.083 4.083 5 C -0.205 4.205 6 C -0.154 4.154 7 N -0.169 5.169 8 H 0.240 0.760 9 C -0.153 4.153 10 C -0.130 4.130 11 C 0.143 3.857 12 C -0.491 4.491 13 H 0.066 0.934 14 C -0.128 4.128 15 N -0.535 5.535 16 Si 0.711 3.289 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.219 1.219 20 C -0.042 4.042 21 N -0.347 5.347 22 H 0.092 0.908 23 H 0.031 0.969 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.165 0.835 28 H 0.171 0.829 29 H 0.063 0.937 30 H -0.007 1.007 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.571 -6.411 -4.764 8.391 hybrid contribution 0.384 -0.693 0.335 0.860 sum 2.955 -7.104 -4.430 8.878 Atomic orbital electron populations 1.21453 0.95715 1.00082 0.99097 1.21680 0.95539 0.98132 0.92540 0.91015 1.20663 0.98887 0.90196 0.98581 1.20558 1.08882 0.93949 0.97125 1.20586 1.13837 0.90407 0.90610 1.41768 1.60841 1.08572 1.05693 0.75985 1.20835 1.13428 0.90551 0.90497 1.20919 1.02578 0.95467 0.94036 1.17262 0.92425 0.83483 0.92481 1.20702 1.21256 0.92981 1.14190 0.93408 1.24686 0.96050 0.95767 0.96257 1.69872 1.45706 0.97483 1.40439 0.86725 0.80391 0.77499 0.84313 1.20330 1.21508 1.21901 1.21785 0.94350 1.00828 0.87262 1.58535 1.39915 1.04685 1.31584 0.90850 0.96935 0.94547 0.93415 0.93035 0.83506 0.82916 0.93742 1.00695 0.88620 0.87216 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 8.11 37.15 0.30 -2.16 16 2 C -0.06 -1.37 2.25 -89.20 -0.20 -1.57 16 3 H 0.07 1.76 7.62 -51.93 -0.40 1.37 16 4 C -0.05 -0.92 6.29 -26.94 -0.17 -1.09 16 5 C -0.20 -4.04 6.91 -104.58 -0.72 -4.77 16 6 C -0.03 -0.43 11.94 -16.75 -0.20 -0.63 16 7 N -0.57 -9.03 6.07 -12.84 -0.08 -9.11 16 8 H 0.41 4.70 8.96 -40.82 -0.37 4.33 16 9 C -0.03 -0.49 11.60 -16.74 -0.19 -0.68 16 10 C -0.12 -2.72 4.99 -104.59 -0.52 -3.24 16 11 C 0.14 3.47 0.26 -155.86 -0.04 3.43 16 12 C -0.45 -12.01 6.03 -34.44 -0.21 -12.22 16 13 H 0.05 1.34 7.77 -52.49 -0.41 0.93 16 14 C 0.07 1.92 3.84 -17.82 -0.07 1.85 16 15 N -0.89 -24.32 10.18 55.43 0.56 -23.76 16 16 Si 0.88 21.79 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 C 0.09 2.08 5.31 -3.83 -0.02 2.06 16 21 N -0.82 -17.73 8.96 -10.37 -0.09 -17.82 16 22 H 0.07 1.86 5.92 -51.93 -0.31 1.55 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 25 H 0.05 0.90 7.91 -51.93 -0.41 0.49 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 28 H 0.15 2.74 8.06 -52.49 -0.42 2.31 16 29 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 30 H -0.02 -0.58 8.13 -51.92 -0.42 -1.00 16 31 H 0.10 2.49 6.25 -51.93 -0.32 2.16 16 32 H 0.32 6.37 8.26 -39.29 -0.32 6.04 16 33 H 0.31 6.03 9.08 -39.29 -0.36 5.67 16 LS Contribution 262.32 15.07 3.95 3.95 Total: -1.00 -29.17 262.32 -7.28 -36.45 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -4.56 Total: 12.54 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -2.04 Total: -19.03 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.39 Total: -50.68 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.17 -7.28 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259767343.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.865 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds