Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.65965 * 2 1 4 4 C 1.54346 * 110.74648 * 236.60045 * 2 1 3 5 5 C 1.51190 * 105.27113 * 268.29200 * 4 2 1 6 6 C 1.34879 * 143.18912 * 162.76714 * 5 4 2 7 7 N 1.36325 * 108.22028 * 179.97438 * 6 5 4 8 8 H 0.97006 * 125.63895 * 180.02562 * 7 6 5 9 9 C 1.36337 * 108.72900 * 359.97438 * 7 6 5 10 10 C 1.34881 * 108.21936 * 0.02562 * 9 7 6 11 11 C 1.51181 * 143.18940 * 179.97438 * 10 9 7 12 12 C 1.50700 * 110.28638 * 316.18722 * 11 10 9 13 13 H 1.07998 * 119.99842 * 358.73089 * 12 11 10 14 14 C 1.37879 * 120.00192 * 178.73423 * 12 11 10 15 15 N 1.31521 * 119.99872 * 4.87540 * 14 12 11 16 16 Si 1.86795 * 120.00095 * 184.88158 * 14 12 11 17 17 H 1.48504 * 109.47280 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47388 * 119.99912 * 16 14 12 19 19 H 1.48504 * 109.47172 * 239.99967 * 16 14 12 20 20 C 1.53003 * 110.36515 * 78.24688 * 11 10 9 21 21 N 1.46894 * 109.46936 * 290.66984 * 20 11 10 22 22 H 1.08996 * 109.47499 * 302.90067 * 1 2 3 23 23 H 1.09002 * 109.47354 * 62.90679 * 1 2 3 24 24 H 1.09006 * 109.46923 * 182.90310 * 1 2 3 25 25 H 1.09005 * 110.28204 * 27.23996 * 4 2 1 26 26 H 1.09002 * 110.28102 * 149.33688 * 4 2 1 27 27 H 1.08000 * 125.88840 * 359.96401 * 6 5 4 28 28 H 1.07996 * 125.88798 * 180.02562 * 9 7 6 29 29 H 0.97000 * 119.99692 * 179.97438 * 15 14 12 30 30 H 1.09007 * 109.46961 * 50.66652 * 20 11 10 31 31 H 1.08993 * 109.47238 * 170.66651 * 20 11 10 32 32 H 1.00895 * 111.00221 * 66.13219 * 21 20 11 33 33 H 1.00906 * 111.00213 * 190.08717 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0767 -0.7945 -1.2050 5 6 2.2584 -2.2082 -0.7005 6 6 2.4225 -3.4853 -1.1020 7 7 2.5242 -4.2712 0.0073 8 1 2.6483 -5.2332 0.0089 9 6 2.4237 -3.4813 1.1140 10 6 2.2592 -2.2056 0.7081 11 6 2.0772 -0.7904 1.2077 12 6 1.0874 -0.7605 2.3437 13 1 0.6103 -1.6734 2.6683 14 6 0.7909 0.4322 2.9686 15 7 1.2974 1.5571 2.5128 16 14 -0.3301 0.4504 4.4627 17 1 -0.7651 -0.9353 4.7722 18 1 0.4041 1.0106 5.6256 19 1 -1.5210 1.2906 4.1779 20 6 3.4185 -0.2083 1.6586 21 7 3.8620 -0.8906 2.8815 22 1 -0.3634 0.5582 0.8628 23 1 -0.3634 0.4680 -0.9149 24 1 -0.3633 -1.0264 0.0521 25 1 1.3604 -0.7756 -2.0265 26 1 3.0330 -0.3822 -1.5269 27 1 2.4657 -3.8265 -2.1258 28 1 2.4682 -3.8189 2.1388 29 1 1.0885 2.3963 2.9522 30 1 4.1598 -0.3528 0.8727 31 1 3.3035 0.8570 1.8582 32 1 4.0719 -1.8604 2.6987 33 1 4.6551 -0.4199 3.2909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259767343.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = 38.035722 kcal Electronic energy + Delta-G solvation = -15784.655332 eV Core-core repulsion = 13424.388576 eV Total energy + Delta-G solvation = -2360.266756 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.11660 -38.42973 -34.62315 -33.78896 -30.91433 -30.27814 -28.06374 -27.24587 -25.78687 -22.97508 -21.51586 -20.18064 -19.27313 -18.31599 -17.20706 -16.48390 -16.11153 -15.50990 -15.27162 -14.53263 -14.29896 -13.96698 -13.91058 -13.60526 -13.38464 -13.15856 -12.71438 -12.47634 -12.12821 -11.99717 -11.77847 -11.32354 -11.12565 -10.83782 -10.52675 -10.07644 -9.08544 -8.83501 -8.61625 -7.76952 -5.76382 1.45954 1.50885 1.57588 1.66538 2.39332 2.65719 2.77559 3.53233 4.01842 4.28278 4.49531 4.64245 4.67349 4.74968 4.80023 4.96255 5.06893 5.19173 5.22943 5.30649 5.46636 5.59698 5.73806 5.90699 5.91722 6.04371 6.06994 6.27863 6.40496 6.60575 6.67056 6.90460 7.08699 7.16557 7.21394 7.83439 9.27208 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.012147 C = 0.011352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.959290 B = 2304.601065 C = 2465.946974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.063 4.063 3 H 0.047 0.953 4 C -0.036 4.036 5 C -0.232 4.232 6 C 0.000 4.000 7 N -0.549 5.549 8 H 0.429 0.571 9 C -0.027 4.027 10 C -0.163 4.163 11 C 0.139 3.861 12 C -0.451 4.451 13 H 0.027 0.973 14 C 0.039 3.961 15 N -0.907 5.907 16 Si 0.920 3.080 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C 0.099 3.901 21 N -0.828 5.828 22 H 0.044 0.956 23 H 0.033 0.967 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.189 0.811 28 H 0.161 0.839 29 H 0.249 0.751 30 H -0.023 1.023 31 H 0.066 0.934 32 H 0.328 0.672 33 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.642 -8.598 -6.201 11.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 H 0.065 0.935 4 C -0.074 4.074 5 C -0.240 4.240 6 C -0.131 4.131 7 N -0.147 5.147 8 H 0.268 0.732 9 C -0.156 4.156 10 C -0.169 4.169 11 C 0.138 3.862 12 C -0.490 4.490 13 H 0.045 0.955 14 C -0.158 4.158 15 N -0.549 5.549 16 Si 0.750 3.250 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.218 1.218 20 C -0.032 4.032 21 N -0.356 5.356 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.206 0.794 28 H 0.178 0.822 29 H 0.058 0.942 30 H -0.005 1.005 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.923 -8.406 -5.857 10.654 hybrid contribution 0.287 -0.147 0.678 0.751 sum 3.210 -8.553 -5.179 10.501 Atomic orbital electron populations 1.21300 0.95955 0.99120 0.98870 1.21596 0.95317 0.97206 0.94148 0.93462 1.20475 0.99246 0.90238 0.97457 1.20695 1.11699 0.95105 0.96464 1.21124 1.10426 0.89207 0.92365 1.41717 1.58867 1.09657 1.04452 0.73176 1.20919 1.12757 0.90192 0.91716 1.20833 1.05450 0.95426 0.95228 1.17209 0.91617 0.85582 0.91798 1.20779 1.21456 0.91849 1.14904 0.95478 1.25087 0.97093 0.95817 0.97796 1.69975 1.46500 0.97469 1.40940 0.86108 0.79350 0.77093 0.82430 1.20519 1.21881 1.21848 1.21539 0.94615 0.99185 0.87864 1.58444 1.40822 1.05412 1.30872 0.93723 0.94771 0.95350 0.91992 0.92614 0.79406 0.82157 0.94175 1.00547 0.91589 0.86062 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.42 8.11 71.98 0.58 -3.83 16 2 C -0.06 -2.93 2.25 -9.88 -0.02 -2.95 16 3 H 0.05 2.38 7.62 -2.39 -0.02 2.36 16 4 C -0.04 -1.43 6.29 30.46 0.19 -1.24 16 5 C -0.23 -8.95 6.91 -19.84 -0.14 -9.08 16 6 C 0.00 -0.01 11.94 83.22 0.99 0.98 16 7 N -0.55 -15.10 6.07 -194.54 -1.18 -16.28 16 8 H 0.43 7.91 8.96 -92.70 -0.83 7.08 16 9 C -0.03 -0.96 11.60 83.22 0.97 0.01 16 10 C -0.16 -6.94 4.99 -19.84 -0.10 -7.04 16 11 C 0.14 6.69 0.26 -53.06 -0.01 6.68 16 12 C -0.45 -24.21 6.03 25.60 0.15 -24.05 16 13 H 0.03 1.53 7.77 -2.91 -0.02 1.51 16 14 C 0.04 2.14 3.84 84.65 0.32 2.46 16 15 N -0.91 -50.47 10.18 21.45 0.22 -50.25 16 16 Si 0.92 45.17 29.54 68.60 2.03 47.19 16 17 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 19 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 20 C 0.10 4.70 5.31 86.31 0.46 5.16 16 21 N -0.83 -35.48 8.96 -186.72 -1.67 -37.16 16 22 H 0.04 2.29 5.92 -2.39 -0.01 2.28 16 23 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.03 1.31 8.10 -2.38 -0.02 1.29 16 25 H 0.06 2.20 7.91 -2.38 -0.02 2.18 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 28 H 0.16 5.42 8.06 -2.91 -0.02 5.39 16 29 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 30 H -0.02 -1.09 8.13 -2.38 -0.02 -1.11 16 31 H 0.07 3.52 6.25 -2.39 -0.01 3.50 16 32 H 0.33 12.85 8.26 -89.70 -0.74 12.11 16 33 H 0.32 12.40 9.08 -89.69 -0.81 11.59 16 Total: -1.00 -62.63 262.32 1.54 -61.09 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -1.25 Total: 28.30 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 3.40 Total: -32.89 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -2.64 Total: -103.69 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -62.63 1.54 -61.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259767343.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.125 kcal (2) G-P(sol) polarization free energy of solvation -62.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds