Wall clock time and date at job start Mon Mar 30 2020 03:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38253 * 125.77145 * 2 1 4 4 C 1.39952 * 126.31405 * 359.85497 * 3 2 1 5 5 H 1.07998 * 120.00279 * 20.33271 * 4 3 2 6 6 C 1.40067 * 119.99980 * 200.33284 * 4 3 2 7 7 N 1.30865 * 119.99940 * 195.89812 * 6 4 3 8 8 Si 1.86804 * 119.99916 * 15.89978 * 6 4 3 9 9 H 1.48491 * 109.47188 * 269.99947 * 8 6 4 10 10 H 1.48498 * 109.46974 * 30.00179 * 8 6 4 11 11 H 1.48501 * 109.46874 * 149.99629 * 8 6 4 12 12 C 1.39973 * 107.36622 * 180.12389 * 3 2 1 13 13 C 1.38530 * 106.95667 * 359.63282 * 12 3 2 14 14 C 1.35487 * 125.77081 * 179.97438 * 2 1 3 15 15 C 1.51110 * 128.14493 * 0.29673 * 14 2 1 16 16 C 1.53471 * 107.83483 * 163.92767 * 15 14 2 17 17 N 1.46924 * 109.68983 * 49.50783 * 16 15 14 18 18 C 1.46901 * 110.99695 * 52.38100 * 17 16 15 19 19 C 1.47279 * 111.44799 * 288.10419 * 17 16 15 20 20 H 1.09003 * 109.46789 * 90.02713 * 1 2 3 21 21 H 1.08994 * 109.47092 * 210.02385 * 1 2 3 22 22 H 1.08999 * 109.47299 * 330.02827 * 1 2 3 23 23 H 0.96993 * 119.99993 * 354.97909 * 7 6 4 24 24 H 1.08004 * 126.52018 * 179.77937 * 12 3 2 25 25 H 1.09001 * 109.78875 * 283.51381 * 15 14 2 26 26 H 1.09001 * 109.78701 * 44.28756 * 15 14 2 27 27 H 1.09000 * 109.43668 * 169.57626 * 16 15 14 28 28 H 1.09001 * 109.43849 * 289.48568 * 16 15 14 29 29 H 1.08996 * 109.47389 * 60.00393 * 18 17 16 30 30 H 1.09007 * 109.47026 * 179.97438 * 18 17 16 31 31 H 1.08999 * 109.47480 * 299.99614 * 18 17 16 32 32 H 1.09003 * 109.71374 * 171.07106 * 19 17 16 33 33 H 1.08997 * 109.71321 * 291.65913 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2731 1.1217 0.0000 4 6 1.8426 2.4534 -0.0029 5 1 0.8414 2.6980 0.3197 6 6 2.7104 3.4690 -0.4241 7 7 2.4408 4.7183 -0.1429 8 14 4.2524 3.0401 -1.3872 9 1 5.3770 2.8115 -0.4449 10 1 4.0135 1.8082 -2.1812 11 1 4.5925 4.1599 -2.3014 12 6 3.6013 0.6798 -0.0029 13 6 3.5663 -0.7051 0.0039 14 6 2.2570 -1.0993 0.0005 15 6 1.8383 -2.5512 -0.0050 16 6 3.0587 -3.3908 -0.4065 17 7 4.2191 -2.9963 0.4036 18 6 3.8975 -3.0325 1.8366 19 6 4.7254 -1.6706 0.0097 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3633 -0.8897 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 1.6052 4.9480 0.2928 24 1 4.4852 1.3004 -0.0070 25 1 1.5016 -2.8420 0.9901 26 1 1.0336 -2.7005 -0.7250 27 1 2.8430 -4.4464 -0.2413 28 1 3.2808 -3.2267 -1.4610 29 1 3.6027 -4.0435 2.1174 30 1 4.7739 -2.7366 2.4133 31 1 3.0775 -2.3445 2.0424 32 1 5.4779 -1.3371 0.7243 33 1 5.1637 -1.7256 -0.9868 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798150.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:09 Heat of formation + Delta-G solvation = 42.144991 kcal Electronic energy + Delta-G solvation = -15389.511940 eV Core-core repulsion = 13029.423375 eV Total energy + Delta-G solvation = -2360.088565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18564 -37.23636 -33.50700 -32.02482 -30.61800 -28.82713 -27.21664 -25.41753 -24.57400 -21.81706 -20.78568 -19.80241 -17.53584 -17.14527 -15.79403 -14.97750 -14.47455 -14.25914 -13.85952 -13.70621 -13.19008 -12.90703 -12.62769 -12.02255 -11.89713 -11.67967 -11.53598 -11.31151 -11.06450 -10.99110 -10.86655 -10.39267 -10.16566 -9.64998 -9.35032 -8.94918 -7.87906 -7.28967 -7.22028 -6.83847 -4.27385 3.19590 3.38061 3.60343 3.71682 4.09762 4.14820 4.21023 4.53058 5.24170 5.35344 5.47992 5.54066 5.64415 5.75694 5.90303 5.96187 5.99660 6.05552 6.14632 6.19474 6.28715 6.35620 6.41313 6.44042 6.88067 7.23738 7.32191 7.47599 7.56839 7.71382 7.83200 8.09135 8.56330 8.71354 8.91216 9.03576 10.20799 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.010682 C = 0.008992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.435670 B = 2620.655914 C = 3113.088656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.470 5.470 3 C 0.227 3.773 4 C -0.527 4.527 5 H 0.068 0.932 6 C 0.055 3.945 7 N -0.834 5.834 8 Si 1.084 2.916 9 H -0.280 1.280 10 H -0.262 1.262 11 H -0.300 1.300 12 C -0.343 4.343 13 C -0.156 4.156 14 C -0.095 4.095 15 C -0.062 4.062 16 C 0.066 3.934 17 N -0.539 5.539 18 C 0.023 3.977 19 C 0.126 3.874 20 H 0.052 0.948 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.280 0.720 24 H 0.115 0.885 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -11.272 0.030 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.153 5.153 3 C 0.117 3.883 4 C -0.562 4.562 5 H 0.086 0.914 6 C -0.163 4.163 7 N -0.459 5.459 8 Si 0.912 3.088 9 H -0.207 1.207 10 H -0.186 1.186 11 H -0.228 1.228 12 C -0.365 4.365 13 C -0.165 4.165 14 C -0.201 4.201 15 C -0.102 4.102 16 C -0.063 4.063 17 N -0.260 5.260 18 C -0.125 4.125 19 C -0.002 4.002 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.133 0.867 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.094 -10.989 -0.693 11.065 hybrid contribution -2.435 0.194 1.058 2.662 sum -1.341 -10.795 0.365 10.885 Atomic orbital electron populations 1.21474 0.80167 1.01859 1.01165 1.43605 1.03984 1.05653 1.62072 1.18340 0.87880 0.85994 0.96106 1.19478 1.02444 0.89876 1.44403 0.91430 1.26978 1.03383 0.91921 0.94005 1.70611 1.24047 1.19435 1.31804 0.83451 0.73659 0.75085 0.76588 1.20716 1.18630 1.22806 1.20293 0.94579 0.93259 1.28373 1.19384 0.92832 0.94422 1.09814 1.19337 0.89938 0.87415 1.23401 1.20472 0.98431 0.91178 1.00079 1.22056 0.88526 0.97587 0.98112 1.62465 1.31562 1.27921 1.04084 1.22328 1.00835 1.00460 0.88902 1.20633 0.94538 0.84747 1.00259 0.92959 0.92336 0.91118 0.90859 0.86727 0.92878 0.92637 0.91252 0.90966 0.92550 0.92114 0.94204 0.91095 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.82 10.78 59.85 0.65 2.47 16 2 N -0.47 -11.05 3.18 -116.52 -0.37 -11.42 16 3 C 0.23 6.05 6.24 -83.68 -0.52 5.52 16 4 C -0.53 -14.67 9.34 -38.25 -0.36 -15.03 16 5 H 0.07 1.91 7.36 -52.49 -0.39 1.52 16 6 C 0.06 1.52 5.50 -17.28 -0.10 1.42 16 7 N -0.83 -23.39 13.66 55.56 0.76 -22.63 16 8 Si 1.08 26.05 24.92 -169.99 -4.24 21.82 16 9 H -0.28 -6.49 6.59 56.52 0.37 -6.12 16 10 H -0.26 -6.32 6.68 56.52 0.38 -5.94 16 11 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 12 C -0.34 -8.83 8.16 -38.82 -0.32 -9.15 16 13 C -0.16 -3.56 5.50 -104.98 -0.58 -4.14 16 14 C -0.10 -2.09 6.05 -81.32 -0.49 -2.58 16 15 C -0.06 -1.06 5.26 -27.44 -0.14 -1.21 16 16 C 0.07 1.03 5.96 -3.57 -0.02 1.01 16 17 N -0.54 -8.99 5.20 -243.62 -1.27 -10.25 16 18 C 0.02 0.36 8.85 60.07 0.53 0.89 16 19 C 0.13 2.38 6.15 -4.69 -0.03 2.36 16 20 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.06 0.94 7.91 -51.93 -0.41 0.53 16 22 H 0.07 1.35 7.30 -51.93 -0.38 0.97 16 23 H 0.28 7.64 8.73 -40.82 -0.36 7.28 16 24 H 0.12 2.93 4.28 -52.48 -0.22 2.71 16 25 H 0.05 0.87 7.00 -51.93 -0.36 0.51 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.89 8.02 -51.92 -0.42 0.48 16 31 H 0.04 0.70 5.64 -51.93 -0.29 0.41 16 32 H 0.07 1.29 7.96 -51.93 -0.41 0.88 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 258.10 15.07 3.89 3.89 Total: -1.00 -29.81 258.10 -7.23 -37.04 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.63 Total: 0.00 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -1.38 Total: -18.44 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.88 Total: -44.31 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -4.24 Total: 21.82 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.81 -7.23 -37.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798150.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.186 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds