Wall clock time and date at job start Mon Mar 30 2020 03:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38253 * 125.77145 * 2 1 4 4 C 1.39952 * 126.31405 * 359.85497 * 3 2 1 5 5 H 1.07998 * 120.00279 * 20.33271 * 4 3 2 6 6 C 1.40067 * 119.99980 * 200.33284 * 4 3 2 7 7 N 1.30865 * 119.99940 * 195.89812 * 6 4 3 8 8 Si 1.86804 * 119.99916 * 15.89978 * 6 4 3 9 9 H 1.48491 * 109.47188 * 269.99947 * 8 6 4 10 10 H 1.48498 * 109.46974 * 30.00179 * 8 6 4 11 11 H 1.48501 * 109.46874 * 149.99629 * 8 6 4 12 12 C 1.39973 * 107.36622 * 180.12389 * 3 2 1 13 13 C 1.38530 * 106.95667 * 359.63282 * 12 3 2 14 14 C 1.35487 * 125.77081 * 179.97438 * 2 1 3 15 15 C 1.51110 * 128.14493 * 0.29673 * 14 2 1 16 16 C 1.53471 * 107.83483 * 163.92767 * 15 14 2 17 17 N 1.46924 * 109.68983 * 49.50783 * 16 15 14 18 18 C 1.46901 * 110.99695 * 52.38100 * 17 16 15 19 19 C 1.47279 * 111.44799 * 288.10419 * 17 16 15 20 20 H 1.09003 * 109.46789 * 90.02713 * 1 2 3 21 21 H 1.08994 * 109.47092 * 210.02385 * 1 2 3 22 22 H 1.08999 * 109.47299 * 330.02827 * 1 2 3 23 23 H 0.96993 * 119.99993 * 354.97909 * 7 6 4 24 24 H 1.08004 * 126.52018 * 179.77937 * 12 3 2 25 25 H 1.09001 * 109.78875 * 283.51381 * 15 14 2 26 26 H 1.09001 * 109.78701 * 44.28756 * 15 14 2 27 27 H 1.09000 * 109.43668 * 169.57626 * 16 15 14 28 28 H 1.09001 * 109.43849 * 289.48568 * 16 15 14 29 29 H 1.08996 * 109.47389 * 60.00393 * 18 17 16 30 30 H 1.09007 * 109.47026 * 179.97438 * 18 17 16 31 31 H 1.08999 * 109.47480 * 299.99614 * 18 17 16 32 32 H 1.09003 * 109.71374 * 171.07106 * 19 17 16 33 33 H 1.08997 * 109.71321 * 291.65913 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2731 1.1217 0.0000 4 6 1.8426 2.4534 -0.0029 5 1 0.8414 2.6980 0.3197 6 6 2.7104 3.4690 -0.4241 7 7 2.4408 4.7183 -0.1429 8 14 4.2524 3.0401 -1.3872 9 1 5.3770 2.8115 -0.4449 10 1 4.0135 1.8082 -2.1812 11 1 4.5925 4.1599 -2.3014 12 6 3.6013 0.6798 -0.0029 13 6 3.5663 -0.7051 0.0039 14 6 2.2570 -1.0993 0.0005 15 6 1.8383 -2.5512 -0.0050 16 6 3.0587 -3.3908 -0.4065 17 7 4.2191 -2.9963 0.4036 18 6 3.8975 -3.0325 1.8366 19 6 4.7254 -1.6706 0.0097 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3633 -0.8897 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 1.6052 4.9480 0.2928 24 1 4.4852 1.3004 -0.0070 25 1 1.5016 -2.8420 0.9901 26 1 1.0336 -2.7005 -0.7250 27 1 2.8430 -4.4464 -0.2413 28 1 3.2808 -3.2267 -1.4610 29 1 3.6027 -4.0435 2.1174 30 1 4.7739 -2.7366 2.4133 31 1 3.0775 -2.3445 2.0424 32 1 5.4779 -1.3371 0.7243 33 1 5.1637 -1.7256 -0.9868 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798150.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:09 Heat of formation + Delta-G solvation = 21.722777 kcal Electronic energy + Delta-G solvation = -15390.397514 eV Core-core repulsion = 13029.423375 eV Total energy + Delta-G solvation = -2360.974139 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.91342 -38.70044 -35.53212 -33.71431 -32.09975 -30.58589 -28.68038 -26.90319 -26.31710 -23.46449 -22.27195 -21.68088 -19.50138 -18.77228 -17.45792 -16.39939 -15.99803 -15.80660 -15.60464 -15.51534 -14.87497 -14.59459 -14.04289 -13.64050 -13.52636 -13.25678 -13.03090 -12.83324 -12.65729 -12.56185 -12.30409 -11.96336 -11.82218 -11.51778 -11.29681 -10.94186 -9.38766 -9.23249 -9.04770 -8.77658 -6.32721 1.27868 1.42908 1.74139 1.81058 2.18871 2.26405 2.45377 3.15019 3.23444 4.01998 4.06331 4.18249 4.33139 4.38537 4.45057 4.54800 4.61080 4.66207 4.78739 4.87230 4.89480 5.00621 5.06094 5.10892 5.15739 5.34827 5.49914 5.61630 5.76841 6.08595 6.21114 6.26327 6.58132 6.83588 6.92111 7.16698 8.09908 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.010682 C = 0.008992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.435670 B = 2620.655914 C = 3113.088656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.477 5.477 3 C 0.186 3.814 4 C -0.547 4.547 5 H 0.045 0.955 6 C 0.019 3.981 7 N -0.860 5.860 8 Si 1.120 2.880 9 H -0.270 1.270 10 H -0.266 1.266 11 H -0.289 1.289 12 C -0.354 4.354 13 C -0.184 4.184 14 C -0.076 4.076 15 C -0.060 4.060 16 C 0.066 3.934 17 N -0.534 5.534 18 C 0.025 3.975 19 C 0.130 3.870 20 H 0.066 0.934 21 H 0.094 0.906 22 H 0.059 0.941 23 H 0.273 0.727 24 H 0.109 0.891 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 -14.634 -0.189 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.158 5.158 3 C 0.074 3.926 4 C -0.582 4.582 5 H 0.063 0.937 6 C -0.193 4.193 7 N -0.487 5.487 8 Si 0.944 3.056 9 H -0.197 1.197 10 H -0.191 1.191 11 H -0.216 1.216 12 C -0.377 4.377 13 C -0.192 4.192 14 C -0.184 4.184 15 C -0.100 4.100 16 C -0.063 4.063 17 N -0.255 5.255 18 C -0.123 4.123 19 C 0.002 3.998 20 H 0.085 0.915 21 H 0.112 0.888 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.127 0.873 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.091 0.909 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.317 -14.352 -0.901 14.440 hybrid contribution -2.606 1.024 1.171 3.035 sum -1.289 -13.328 0.270 13.393 Atomic orbital electron populations 1.21726 0.77807 1.03111 1.02499 1.43974 1.05775 1.05385 1.60680 1.18360 0.89075 0.86404 0.98733 1.19460 1.01736 0.91230 1.45768 0.93683 1.27931 1.05406 0.91684 0.94280 1.70669 1.24238 1.19928 1.33905 0.82974 0.71783 0.74862 0.75972 1.19653 1.19111 1.21646 1.20546 0.94157 0.95049 1.27898 1.19869 0.94943 0.93868 1.10547 1.20295 0.89724 0.89298 1.19035 1.20673 0.99954 0.87684 1.01666 1.22203 0.87079 0.99184 0.97809 1.62517 1.32255 1.25875 1.04858 1.22371 1.00147 1.01587 0.88214 1.20633 0.93262 0.85049 1.00888 0.91518 0.88768 0.92196 0.91645 0.87350 0.91282 0.90662 0.87570 0.91155 0.89572 0.91811 0.96652 0.90874 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.27 10.78 127.77 1.38 4.65 16 2 N -0.48 -21.91 3.18 -522.54 -1.66 -23.57 16 3 C 0.19 10.01 6.24 38.97 0.24 10.25 16 4 C -0.55 -31.64 9.34 23.13 0.22 -31.43 16 5 H 0.04 2.70 7.36 -2.91 -0.02 2.68 16 6 C 0.02 1.09 5.50 85.28 0.47 1.56 16 7 N -0.86 -50.14 13.66 21.86 0.30 -49.84 16 8 Si 1.12 53.82 24.92 68.60 1.71 55.53 16 9 H -0.27 -12.37 6.59 99.48 0.66 -11.71 16 10 H -0.27 -12.81 6.68 99.48 0.66 -12.14 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 12 C -0.35 -18.22 8.16 22.76 0.19 -18.04 16 13 C -0.18 -8.12 5.50 -20.10 -0.11 -8.23 16 14 C -0.08 -3.15 6.05 41.77 0.25 -2.90 16 15 C -0.06 -1.79 5.26 30.14 0.16 -1.63 16 16 C 0.07 1.72 5.96 86.46 0.52 2.23 16 17 N -0.53 -15.68 5.20 -924.66 -4.81 -20.49 16 18 C 0.03 0.68 8.85 127.69 1.13 1.81 16 19 C 0.13 4.60 6.15 85.53 0.53 5.12 16 20 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 21 H 0.09 2.72 7.91 -2.39 -0.02 2.70 16 22 H 0.06 2.29 7.30 -2.39 -0.02 2.27 16 23 H 0.27 15.69 8.73 -92.71 -0.81 14.88 16 24 H 0.11 5.59 4.28 -2.91 -0.01 5.58 16 25 H 0.07 1.91 7.00 -2.39 -0.02 1.89 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.68 8.02 -2.38 -0.02 1.66 16 31 H 0.01 0.48 5.64 -2.39 -0.01 0.47 16 32 H 0.07 2.52 7.96 -2.39 -0.02 2.50 16 33 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -65.57 258.10 1.47 -64.10 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.96 Total: 10.87 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 4.96 Total: -36.59 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -6.17 Total: -93.90 kcal Atomic # 14 Polarization: 53.82 SS G_CDS: 1.71 Total: 55.53 kcal Total: -65.57 1.47 -64.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798150.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.823 kcal (2) G-P(sol) polarization free energy of solvation -65.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds