Wall clock time and date at job start Mon Mar 30 2020 03:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31029 * 1 3 3 Si 1.86797 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47479 * 274.77345 * 3 2 1 5 5 H 1.48500 * 109.46755 * 34.77182 * 3 2 1 6 6 H 1.48502 * 109.47343 * 154.77280 * 3 2 1 7 7 C 1.39759 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99944 * 165.00523 * 7 2 1 9 9 C 1.40656 * 119.99849 * 345.00357 * 7 2 1 10 10 C 1.39641 * 123.45704 * 337.63115 * 9 7 2 11 11 N 1.29144 * 118.42874 * 179.97438 * 10 9 7 12 12 S 1.69527 * 108.54265 * 359.97438 * 11 10 9 13 13 C 1.41242 * 123.45942 * 157.60191 * 9 7 2 14 14 C 1.41682 * 127.85281 * 0.02562 * 13 9 7 15 15 C 1.38188 * 126.11158 * 180.02562 * 14 13 9 16 16 C 1.40340 * 106.52679 * 179.97438 * 15 14 13 17 17 C 1.35167 * 107.22314 * 0.02562 * 16 15 14 18 18 O 1.34219 * 109.04851 * 359.72772 * 17 16 15 19 19 H 0.97002 * 119.99802 * 359.97438 * 1 2 3 20 20 H 1.07991 * 120.78870 * 359.97438 * 10 9 7 21 21 H 1.08001 * 126.73391 * 359.97438 * 15 14 13 22 22 H 1.07999 * 126.38486 * 179.97438 * 16 15 14 23 23 H 1.08004 * 125.47646 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 2.3911 2.1047 -1.3952 5 1 1.4959 2.6214 0.7985 6 1 3.5887 1.4130 0.5967 7 6 2.0091 -1.2104 -0.0005 8 1 3.0615 -1.2262 -0.2425 9 6 1.3417 -2.4078 0.3141 10 6 0.1587 -2.4583 1.0543 11 7 -0.3726 -3.6123 1.2865 12 16 0.5958 -4.8054 0.5705 13 6 1.7990 -3.6827 -0.0866 14 6 2.9564 -3.9931 -0.8426 15 6 3.3704 -5.2576 -1.2157 16 6 4.5561 -5.0897 -1.9476 17 6 4.8146 -3.7637 -1.9919 18 8 3.8483 -3.1067 -1.3316 19 1 -0.4850 0.8401 0.0004 20 1 -0.3012 -1.5537 1.4238 21 1 2.8782 -6.1917 -0.9887 22 1 5.1513 -5.8738 -2.3917 23 1 5.6601 -3.3060 -2.4841 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259800559.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:35 Heat of formation + Delta-G solvation = 17.208672 kcal Electronic energy + Delta-G solvation = -12296.042821 eV Core-core repulsion = 10008.240956 eV Total energy + Delta-G solvation = -2287.801865 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.93769 -39.24876 -35.60407 -33.68502 -32.99443 -30.17852 -27.23067 -24.85921 -22.50931 -22.15481 -20.74176 -19.74736 -17.71635 -17.29263 -16.94599 -16.63352 -15.84871 -14.91309 -14.60235 -14.33569 -13.62811 -13.59628 -13.29535 -13.14132 -12.97884 -12.86955 -12.10091 -11.71961 -11.36464 -11.08949 -10.91159 -10.49598 -9.42996 -9.08015 -8.64897 -6.46805 -0.27486 1.03577 1.26484 1.34174 1.39513 1.43020 1.56613 1.85699 2.12769 2.18951 2.78210 3.04807 4.17256 4.35860 4.40625 4.67371 4.77063 4.95758 5.10977 5.22810 5.38957 5.59304 5.74815 5.96565 6.11620 6.35964 6.45617 6.61166 7.93125 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.024358 B = 0.013263 C = 0.008757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.263434 B = 2110.557409 C = 3196.798995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.032 3.968 3 Si 1.001 2.999 4 H -0.258 1.258 5 H -0.253 1.253 6 H -0.255 1.255 7 C -0.382 4.382 8 H 0.097 0.903 9 C 0.029 3.971 10 C 0.121 3.879 11 N -0.478 5.478 12 S 0.105 5.895 13 C -0.356 4.356 14 C 0.132 3.868 15 C -0.297 4.297 16 C -0.193 4.193 17 C -0.100 4.100 18 O -0.188 6.188 19 H 0.310 0.690 20 H 0.188 0.812 21 H 0.136 0.864 22 H 0.171 0.829 23 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.688 1.908 -1.866 6.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.183 1.183 5 H -0.176 1.176 6 H -0.179 1.179 7 C -0.415 4.415 8 H 0.115 0.885 9 C 0.016 3.984 10 C -0.087 4.087 11 N -0.292 5.292 12 S 0.251 5.749 13 C -0.479 4.479 14 C 0.079 3.921 15 C -0.318 4.318 16 C -0.212 4.212 17 C -0.167 4.167 18 O -0.086 6.086 19 H 0.122 0.878 20 H 0.204 0.796 21 H 0.153 0.847 22 H 0.188 0.812 23 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 4.218 0.493 -1.236 4.423 hybrid contribution 0.797 1.699 -0.446 1.929 sum 5.015 2.192 -1.682 5.726 Atomic orbital electron populations 1.69735 1.09167 1.33102 1.29532 1.27157 0.95797 1.05370 0.90484 0.84870 0.79126 0.74019 0.80057 1.18276 1.17638 1.17881 1.19784 0.97983 0.90117 1.33577 0.88509 1.18600 0.92680 0.93659 0.93459 1.23346 0.94090 0.95812 0.95437 1.75959 1.25877 1.03716 1.23623 1.83507 1.17543 1.16405 1.57449 1.21126 1.06477 0.95973 1.24341 1.18411 0.89478 0.87374 0.96816 1.21886 1.02209 0.95950 1.11732 1.21768 0.98275 0.97178 1.04003 1.24664 0.95698 0.92273 1.04045 1.84155 1.30916 1.37382 1.56119 0.87838 0.79616 0.84652 0.81190 0.75118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.10 10.92 21.80 0.24 -34.86 14 2 C 0.03 1.41 5.30 85.18 0.45 1.86 14 3 Si 1.00 32.52 29.58 68.60 2.03 34.55 14 4 H -0.26 -8.19 7.11 99.48 0.71 -7.49 14 5 H -0.25 -7.51 7.11 99.48 0.71 -6.80 14 6 H -0.26 -8.33 7.11 99.48 0.71 -7.62 14 7 C -0.38 -18.93 8.73 23.23 0.20 -18.72 14 8 H 0.10 4.79 6.44 -2.91 -0.02 4.77 14 9 C 0.03 1.53 5.59 -21.61 -0.12 1.41 14 10 C 0.12 6.15 9.93 85.43 0.85 7.00 14 11 N -0.48 -24.06 11.96 -59.77 -0.71 -24.78 14 12 S 0.10 5.07 23.75 -56.49 -1.34 3.73 14 13 C -0.36 -18.60 6.59 23.86 0.16 -18.45 14 14 C 0.13 6.43 6.92 23.11 0.16 6.59 14 15 C -0.30 -12.71 10.76 22.77 0.25 -12.46 14 16 C -0.19 -6.77 10.87 22.07 0.24 -6.53 14 17 C -0.10 -3.51 12.07 67.11 0.81 -2.70 14 18 O -0.19 -8.58 8.85 -7.90 -0.07 -8.65 14 19 H 0.31 11.90 8.30 -92.71 -0.77 11.13 14 20 H 0.19 9.03 6.24 -2.92 -0.02 9.02 14 21 H 0.14 5.53 8.06 -2.91 -0.02 5.50 14 22 H 0.17 4.52 8.06 -2.91 -0.02 4.49 14 23 H 0.23 5.54 8.06 -2.91 -0.02 5.52 14 Total: -1.00 -57.86 228.29 4.38 -53.48 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 1.24 Total: 18.52 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 2.99 Total: -42.00 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.48 Total: -59.64 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.07 Total: -8.65 kcal Atomic # 14 Polarization: 32.52 SS G_CDS: 2.03 Total: 34.55 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.34 Total: 3.73 kcal Total: -57.86 4.38 -53.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800559.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.689 kcal (2) G-P(sol) polarization free energy of solvation -57.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds