Wall clock time and date at job start Mon Mar 30 2020 03:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00072 * 2 1 4 4 C 1.46892 * 110.99633 * 123.95604 * 2 1 3 5 5 H 1.08995 * 109.47453 * 44.13165 * 4 2 1 6 6 C 1.50709 * 109.47355 * 284.13086 * 4 2 1 7 7 H 1.07999 * 120.00043 * 247.07882 * 6 4 2 8 8 C 1.37877 * 119.99557 * 67.07199 * 6 4 2 9 9 N 1.31522 * 119.99850 * 38.30633 * 8 6 4 10 10 Si 1.86794 * 120.00085 * 218.30557 * 8 6 4 11 11 H 1.48500 * 109.47354 * 60.00081 * 10 8 6 12 12 H 1.48499 * 109.47418 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47134 * 300.00116 * 10 8 6 14 14 C 1.52999 * 109.47021 * 164.13728 * 4 2 1 15 15 C 1.50706 * 109.47137 * 294.99876 * 14 4 2 16 16 C 1.38652 * 120.78845 * 270.30059 * 15 14 4 17 17 C 1.38206 * 119.16198 * 180.21585 * 16 15 14 18 18 N 1.31872 * 120.76384 * 359.47866 * 17 16 15 19 19 C 1.31867 * 121.72235 * 0.26956 * 18 17 16 20 20 C 1.38207 * 120.76768 * 359.97438 * 19 18 17 21 21 H 1.09007 * 109.47021 * 313.81616 * 1 2 3 22 22 H 1.09002 * 109.47019 * 73.81468 * 1 2 3 23 23 H 1.08996 * 109.47642 * 193.81469 * 1 2 3 24 24 H 1.08994 * 109.47282 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47455 * 300.00093 * 3 2 1 26 26 H 1.09000 * 109.46874 * 59.99491 * 3 2 1 27 27 H 0.96994 * 119.99706 * 179.97438 * 9 8 6 28 28 H 1.09001 * 109.47793 * 174.99991 * 14 4 2 29 29 H 1.08998 * 109.47501 * 54.99403 * 14 4 2 30 30 H 1.08001 * 120.42136 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.61843 * 179.74995 * 17 16 15 32 32 H 1.08002 * 119.61448 * 179.97438 * 19 18 17 33 33 H 1.07997 * 120.41965 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1375 5 1 1.4370 -1.6966 1.2385 6 6 1.8515 0.0455 2.3993 7 1 2.7306 0.4070 2.9120 8 6 0.5975 0.3264 2.8990 9 7 -0.3512 -0.5828 2.8437 10 14 0.2462 1.9981 3.6547 11 1 0.4734 3.0579 2.6395 12 1 -1.1650 2.0468 4.1144 13 1 1.1510 2.2186 4.8114 14 6 3.4735 -1.0813 0.8998 15 6 3.6071 -1.9943 -0.2917 16 6 3.5769 -3.3719 -0.1371 17 6 3.7070 -4.1777 -1.2524 18 7 3.8480 -3.6504 -2.4528 19 6 3.8759 -2.3451 -2.6378 20 6 3.7566 -1.4768 -1.5692 21 1 -0.3633 0.7116 0.7416 22 1 -0.3633 0.2865 -0.9870 23 1 -0.3634 -0.9979 0.2454 24 1 3.0850 1.3424 0.0005 25 1 1.6460 1.8948 -0.8900 26 1 1.6459 1.8948 0.8900 27 1 -1.2332 -0.3854 3.1956 28 1 3.8869 -1.5714 1.7813 29 1 4.0167 -0.1554 0.7106 30 1 3.4572 -3.8097 0.8429 31 1 3.6886 -5.2517 -1.1400 32 1 3.9934 -1.9499 -3.6361 33 1 3.7798 -0.4087 -1.7272 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259802047.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:34 Heat of formation + Delta-G solvation = 23.307407 kcal Electronic energy + Delta-G solvation = -15188.144965 eV Core-core repulsion = 12827.239541 eV Total energy + Delta-G solvation = -2360.905424 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91049 -38.71088 -34.65416 -34.12721 -31.90889 -30.72812 -28.07401 -27.28260 -24.98232 -24.14456 -22.97180 -20.93107 -18.52914 -17.24060 -17.12269 -16.63171 -16.29815 -15.93915 -15.49699 -15.29217 -14.64267 -14.35957 -14.21288 -13.66090 -13.24124 -12.99857 -12.82739 -12.64777 -12.57675 -12.30648 -12.15076 -11.80848 -11.75368 -11.40852 -10.34721 -10.26518 -10.09884 -9.86387 -8.86483 -8.29097 -6.16445 0.42133 0.55630 1.30177 1.38094 1.42663 2.35585 2.87521 3.08944 3.68181 3.74942 4.05922 4.09010 4.42283 4.46599 4.59570 4.62821 4.77476 4.87924 4.89319 4.96846 5.02712 5.09955 5.27426 5.30653 5.36869 5.39839 5.53031 5.67805 5.77609 5.99876 6.14527 6.61330 6.74827 6.85098 7.18963 7.38184 8.69627 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.045613 B = 0.008375 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.718933 B = 3342.329506 C = 3485.564554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.536 5.536 3 C 0.040 3.960 4 C 0.215 3.785 5 H 0.011 0.989 6 C -0.588 4.588 7 H 0.052 0.948 8 C 0.068 3.932 9 N -0.868 5.868 10 Si 0.897 3.103 11 H -0.268 1.268 12 H -0.288 1.288 13 H -0.274 1.274 14 C -0.059 4.059 15 C -0.023 4.023 16 C -0.187 4.187 17 C 0.086 3.914 18 N -0.519 5.519 19 C 0.085 3.915 20 C -0.152 4.152 21 H 0.007 0.993 22 H 0.053 0.947 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.013 0.987 27 H 0.265 0.735 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.173 0.827 32 H 0.175 0.825 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.875 -0.567 -6.922 9.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.260 5.260 3 C -0.109 4.109 4 C 0.108 3.892 5 H 0.029 0.971 6 C -0.626 4.626 7 H 0.070 0.930 8 C -0.138 4.138 9 N -0.503 5.503 10 Si 0.722 3.278 11 H -0.193 1.193 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.097 4.097 15 C -0.031 4.031 16 C -0.207 4.207 17 C -0.070 4.070 18 N -0.229 5.229 19 C -0.071 4.071 20 C -0.171 4.171 21 H 0.025 0.975 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.191 0.809 32 H 0.192 0.808 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.931 -1.432 -8.044 10.096 hybrid contribution -1.054 1.818 2.388 3.181 sum 4.877 0.387 -5.656 7.478 Atomic orbital electron populations 1.22008 0.89553 0.99720 0.97861 1.62754 1.06363 1.13439 1.43398 1.22121 0.99977 0.90001 0.98797 1.19054 0.90395 0.92632 0.87139 0.97102 1.21491 0.92106 1.36723 1.12253 0.92997 1.25305 0.96596 0.97686 0.94201 1.70390 1.04794 1.31998 1.43082 0.86579 0.77015 0.84964 0.79234 1.19341 1.21393 1.19896 1.20597 0.97768 0.97444 0.93875 1.20520 0.92171 0.94327 0.96063 1.22208 1.03206 0.94168 1.01128 1.22966 0.95516 1.01167 0.87340 1.67653 1.14356 1.15040 1.25822 1.23056 0.95543 0.88524 0.99972 1.22065 1.00724 1.01836 0.92517 0.97456 0.92856 0.94393 0.91674 0.92382 0.96872 0.92596 0.91868 0.91064 0.84895 0.80947 0.80774 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.57 8.35 127.69 1.07 3.64 16 2 N -0.54 -22.90 4.35 -927.74 -4.03 -26.93 16 3 C 0.04 1.53 8.84 127.69 1.13 2.66 16 4 C 0.21 9.98 1.88 44.17 0.08 10.06 16 5 H 0.01 0.59 7.54 -2.39 -0.02 0.57 16 6 C -0.59 -30.19 6.54 25.60 0.17 -30.02 16 7 H 0.05 2.70 7.98 -2.91 -0.02 2.68 16 8 C 0.07 3.57 3.21 84.65 0.27 3.84 16 9 N -0.87 -47.36 12.07 21.45 0.26 -47.10 16 10 Si 0.90 40.93 28.77 68.60 1.97 42.90 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 14 C -0.06 -2.29 4.82 29.85 0.14 -2.14 16 15 C -0.02 -0.80 4.98 -19.67 -0.10 -0.90 16 16 C -0.19 -6.13 9.82 22.36 0.22 -5.92 16 17 C 0.09 2.59 11.18 84.68 0.95 3.53 16 18 N -0.52 -16.40 10.36 -195.84 -2.03 -18.43 16 19 C 0.08 2.48 11.18 84.68 0.95 3.43 16 20 C -0.15 -4.76 9.47 22.36 0.21 -4.55 16 21 H 0.01 0.33 6.05 -2.38 -0.01 0.32 16 22 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.04 1.84 7.46 -2.39 -0.02 1.82 16 24 H 0.06 2.29 6.48 -2.39 -0.02 2.28 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.01 0.56 5.97 -2.39 -0.01 0.55 16 27 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 28 H 0.06 2.45 8.10 -2.39 -0.02 2.43 16 29 H 0.07 2.62 6.48 -2.39 -0.02 2.60 16 30 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.17 4.04 8.06 -2.91 -0.02 4.01 16 32 H 0.18 3.89 8.06 -2.91 -0.02 3.87 16 33 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -57.31 270.03 2.34 -54.97 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.08 Total: 10.96 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 5.09 Total: -16.37 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -5.80 Total: -92.46 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.97 Total: 42.90 kcal Total: -57.31 2.34 -54.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802047.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.274 kcal (2) G-P(sol) polarization free energy of solvation -57.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds