Wall clock time and date at job start Mon Mar 30 2020 03:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 110.99931 * 2 1 4 4 C 1.46899 * 111.00415 * 123.95899 * 2 1 3 5 5 H 1.08998 * 109.47329 * 188.28959 * 4 2 1 6 6 C 1.50708 * 109.46952 * 308.28793 * 4 2 1 7 7 H 1.07998 * 119.99786 * 65.19336 * 6 4 2 8 8 C 1.37875 * 120.00168 * 245.20069 * 6 4 2 9 9 N 1.31514 * 119.99646 * 6.34105 * 8 6 4 10 10 Si 1.86794 * 120.00182 * 186.33779 * 8 6 4 11 11 H 1.48503 * 109.46909 * 59.99778 * 10 8 6 12 12 H 1.48496 * 109.47422 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47147 * 300.00369 * 10 8 6 14 14 C 1.52997 * 109.47356 * 68.28164 * 4 2 1 15 15 C 1.50707 * 109.46816 * 65.00714 * 14 4 2 16 16 C 1.38653 * 120.78487 * 269.71928 * 15 14 4 17 17 C 1.38210 * 119.15978 * 179.79589 * 16 15 14 18 18 N 1.31874 * 120.76113 * 0.48429 * 17 16 15 19 19 C 1.31869 * 121.72506 * 359.74647 * 18 17 16 20 20 C 1.38194 * 120.76841 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47463 * 296.04259 * 1 2 3 22 22 H 1.08996 * 109.47241 * 56.04289 * 1 2 3 23 23 H 1.09004 * 109.47288 * 176.04552 * 1 2 3 24 24 H 1.09006 * 109.47058 * 178.14783 * 3 2 1 25 25 H 1.08991 * 109.47486 * 298.14847 * 3 2 1 26 26 H 1.08998 * 109.47054 * 58.15184 * 3 2 1 27 27 H 0.96999 * 119.99937 * 180.02562 * 9 8 6 28 28 H 1.08995 * 109.47363 * 184.99823 * 14 4 2 29 29 H 1.08995 * 109.47674 * 305.00842 * 14 4 2 30 30 H 1.07993 * 120.42601 * 0.02562 * 16 15 14 31 31 H 1.08000 * 119.61884 * 180.20692 * 17 16 15 32 32 H 1.08005 * 119.61383 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.42505 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 3.0750 -0.6290 1.1993 6 6 1.3536 -0.2792 2.4112 7 1 0.2933 -0.4127 2.5667 8 6 2.1200 0.3367 3.3777 9 7 3.3836 0.6117 3.1384 10 14 1.3637 0.7805 5.0270 11 1 0.8692 -0.4516 5.6924 12 1 2.3893 1.4276 5.8839 13 1 0.2312 1.7176 4.8161 14 6 1.6800 -2.2504 0.9426 15 6 2.4213 -2.7673 -0.2634 16 6 1.8425 -2.7284 -1.5228 17 6 2.5543 -3.2076 -2.6062 18 7 3.7653 -3.7059 -2.4506 19 6 4.3449 -3.7630 -1.2675 20 6 3.6960 -3.2985 -0.1392 21 1 -0.3634 0.4512 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0709 24 1 3.0845 1.3425 0.0332 25 1 1.6730 1.8844 -0.9060 26 1 1.6193 1.9049 0.8729 27 1 3.9230 1.0447 3.8185 28 1 1.9912 -2.8071 1.8264 29 1 0.6080 -2.3774 0.7920 30 1 0.8495 -2.3253 -1.6560 31 1 2.1119 -3.1778 -3.5910 32 1 5.3379 -4.1785 -1.1791 33 1 4.1757 -3.3484 0.8271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259802051.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:37 Heat of formation + Delta-G solvation = 32.185369 kcal Electronic energy + Delta-G solvation = -15079.971231 eV Core-core repulsion = 12719.450785 eV Total energy + Delta-G solvation = -2360.520447 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.56039 -36.87895 -33.01389 -32.41323 -30.61451 -28.85674 -26.46702 -25.43012 -23.32301 -22.83231 -21.44818 -19.22865 -16.56043 -15.82335 -15.77529 -15.00854 -14.85594 -14.11120 -13.74116 -13.47118 -13.20387 -13.03604 -12.45569 -11.95580 -11.64010 -11.38032 -11.03848 -10.87016 -10.78698 -10.74077 -10.41828 -10.17137 -9.91756 -9.20929 -8.92889 -8.80988 -8.59154 -8.53216 -7.04565 -6.13589 -4.26019 1.71839 1.93555 3.20523 3.26769 3.29068 4.28803 4.41587 4.93664 5.03893 5.33110 5.49465 5.51410 5.75251 5.78730 6.16050 6.18915 6.20133 6.36171 6.44392 6.51758 6.65699 6.69263 6.73854 6.89030 7.08265 7.09661 7.15491 7.33745 7.52355 7.71619 8.10293 8.28851 8.48431 8.51999 8.90527 9.42161 10.87443 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.035892 B = 0.008685 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.929059 B = 3223.130940 C = 3541.180346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.545 5.545 3 C 0.051 3.949 4 C 0.198 3.802 5 H 0.079 0.921 6 C -0.545 4.545 7 H 0.055 0.945 8 C 0.076 3.924 9 N -0.883 5.883 10 Si 0.888 3.112 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.277 1.277 14 C -0.073 4.073 15 C -0.003 4.003 16 C -0.152 4.152 17 C 0.084 3.916 18 N -0.506 5.506 19 C 0.087 3.913 20 C -0.176 4.176 21 H 0.033 0.967 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.033 0.967 26 H 0.028 0.972 27 H 0.265 0.735 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -4.338 -5.388 7.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.269 5.269 3 C -0.098 4.098 4 C 0.091 3.909 5 H 0.097 0.903 6 C -0.584 4.584 7 H 0.073 0.927 8 C -0.129 4.129 9 N -0.520 5.520 10 Si 0.716 3.284 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.203 1.203 14 C -0.111 4.111 15 C -0.011 4.011 16 C -0.172 4.172 17 C -0.072 4.072 18 N -0.216 5.216 19 C -0.070 4.070 20 C -0.196 4.196 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.146 0.854 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.254 -4.803 -6.473 8.158 hybrid contribution -1.093 1.133 2.546 2.993 sum -2.347 -3.670 -3.927 5.865 Atomic orbital electron populations 1.22145 0.90640 0.99837 0.99157 1.62612 1.06019 1.13062 1.45187 1.21907 0.99748 0.90136 0.98016 1.19495 0.98696 0.86258 0.86403 0.90260 1.21501 0.95011 1.39036 1.02842 0.92686 1.24998 0.94845 0.94597 0.98428 1.69890 1.06849 1.40964 1.34318 0.86724 0.79004 0.78749 0.83952 1.20082 1.21190 1.20287 1.20989 0.98137 0.99333 0.92637 1.20630 0.93707 0.90473 0.96269 1.21927 1.01700 1.00510 0.93025 1.22561 0.90693 0.95337 0.98582 1.67559 1.11245 1.16535 1.26265 1.22529 0.99217 0.97164 0.88043 1.22054 0.96055 1.01250 1.00231 0.94802 0.94436 0.93262 0.92675 0.94830 0.95289 0.92554 0.91338 0.92234 0.85422 0.83851 0.83768 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 8.90 60.06 0.53 1.14 16 2 N -0.54 -11.68 4.38 -244.59 -1.07 -12.76 16 3 C 0.05 1.10 9.36 60.06 0.56 1.66 16 4 C 0.20 4.61 1.99 -68.86 -0.14 4.47 16 5 H 0.08 2.12 6.77 -51.93 -0.35 1.77 16 6 C -0.54 -13.84 6.45 -34.44 -0.22 -14.07 16 7 H 0.05 1.41 6.88 -52.49 -0.36 1.05 16 8 C 0.08 1.98 5.45 -17.82 -0.10 1.88 16 9 N -0.88 -24.04 12.64 55.43 0.70 -23.34 16 10 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 C -0.07 -1.47 4.81 -27.88 -0.13 -1.61 16 15 C 0.00 -0.05 4.97 -104.31 -0.52 -0.57 16 16 C -0.15 -2.58 9.49 -39.44 -0.37 -2.96 16 17 C 0.08 1.37 11.18 -17.54 -0.20 1.17 16 18 N -0.51 -8.79 10.36 -13.25 -0.14 -8.93 16 19 C 0.09 1.43 11.18 -17.55 -0.20 1.24 16 20 C -0.18 -3.10 9.82 -39.45 -0.39 -3.48 16 21 H 0.03 0.71 6.41 -51.93 -0.33 0.38 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.88 6.39 -51.93 -0.33 0.55 16 24 H 0.05 1.26 7.99 -51.93 -0.42 0.84 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.07 1.41 8.10 -51.93 -0.42 0.98 16 29 H 0.06 1.15 6.38 -51.93 -0.33 0.82 16 30 H 0.13 2.04 7.99 -52.49 -0.42 1.62 16 31 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.14 1.94 8.06 -52.48 -0.42 1.52 16 33 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 275.21 15.07 4.15 4.15 Total: -1.00 -27.45 275.21 -7.16 -34.61 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.61 Total: 2.02 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -1.17 Total: -11.12 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.51 Total: -45.02 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.45 -7.16 -34.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802051.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.792 kcal (2) G-P(sol) polarization free energy of solvation -27.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds