Wall clock time and date at job start Mon Mar 30 2020 03:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 110.99931 * 2 1 4 4 C 1.46899 * 111.00415 * 123.95899 * 2 1 3 5 5 H 1.08998 * 109.47329 * 188.28959 * 4 2 1 6 6 C 1.50708 * 109.46952 * 308.28793 * 4 2 1 7 7 H 1.07998 * 119.99786 * 65.19336 * 6 4 2 8 8 C 1.37875 * 120.00168 * 245.20069 * 6 4 2 9 9 N 1.31514 * 119.99646 * 6.34105 * 8 6 4 10 10 Si 1.86794 * 120.00182 * 186.33779 * 8 6 4 11 11 H 1.48503 * 109.46909 * 59.99778 * 10 8 6 12 12 H 1.48496 * 109.47422 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47147 * 300.00369 * 10 8 6 14 14 C 1.52997 * 109.47356 * 68.28164 * 4 2 1 15 15 C 1.50707 * 109.46816 * 65.00714 * 14 4 2 16 16 C 1.38653 * 120.78487 * 269.71928 * 15 14 4 17 17 C 1.38210 * 119.15978 * 179.79589 * 16 15 14 18 18 N 1.31874 * 120.76113 * 0.48429 * 17 16 15 19 19 C 1.31869 * 121.72506 * 359.74647 * 18 17 16 20 20 C 1.38194 * 120.76841 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47463 * 296.04259 * 1 2 3 22 22 H 1.08996 * 109.47241 * 56.04289 * 1 2 3 23 23 H 1.09004 * 109.47288 * 176.04552 * 1 2 3 24 24 H 1.09006 * 109.47058 * 178.14783 * 3 2 1 25 25 H 1.08991 * 109.47486 * 298.14847 * 3 2 1 26 26 H 1.08998 * 109.47054 * 58.15184 * 3 2 1 27 27 H 0.96999 * 119.99937 * 180.02562 * 9 8 6 28 28 H 1.08995 * 109.47363 * 184.99823 * 14 4 2 29 29 H 1.08995 * 109.47674 * 305.00842 * 14 4 2 30 30 H 1.07993 * 120.42601 * 0.02562 * 16 15 14 31 31 H 1.08000 * 119.61884 * 180.20692 * 17 16 15 32 32 H 1.08005 * 119.61383 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.42505 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 3.0750 -0.6290 1.1993 6 6 1.3536 -0.2792 2.4112 7 1 0.2933 -0.4127 2.5667 8 6 2.1200 0.3367 3.3777 9 7 3.3836 0.6117 3.1384 10 14 1.3637 0.7805 5.0270 11 1 0.8692 -0.4516 5.6924 12 1 2.3893 1.4276 5.8839 13 1 0.2312 1.7176 4.8161 14 6 1.6800 -2.2504 0.9426 15 6 2.4213 -2.7673 -0.2634 16 6 1.8425 -2.7284 -1.5228 17 6 2.5543 -3.2076 -2.6062 18 7 3.7653 -3.7059 -2.4506 19 6 4.3449 -3.7630 -1.2675 20 6 3.6960 -3.2985 -0.1392 21 1 -0.3634 0.4512 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0709 24 1 3.0845 1.3425 0.0332 25 1 1.6730 1.8844 -0.9060 26 1 1.6193 1.9049 0.8729 27 1 3.9230 1.0447 3.8185 28 1 1.9912 -2.8071 1.8264 29 1 0.6080 -2.3774 0.7920 30 1 0.8495 -2.3253 -1.6560 31 1 2.1119 -3.1778 -3.5910 32 1 5.3379 -4.1785 -1.1791 33 1 4.1757 -3.3484 0.8271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259802051.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:37 Heat of formation + Delta-G solvation = 15.636633 kcal Electronic energy + Delta-G solvation = -15080.688838 eV Core-core repulsion = 12719.450785 eV Total energy + Delta-G solvation = -2361.238054 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90989 -38.59842 -34.49633 -34.36991 -31.91383 -30.52547 -28.13134 -27.25159 -25.05365 -24.14488 -22.93060 -20.96466 -18.48609 -17.23007 -17.19469 -16.67465 -16.31461 -15.82818 -15.37857 -15.23982 -14.61376 -14.36567 -14.12415 -13.69307 -13.30502 -12.99811 -12.86314 -12.60221 -12.44327 -12.34926 -12.04085 -11.86053 -11.71352 -11.10662 -10.74128 -10.26712 -10.10629 -9.86791 -8.86093 -8.10022 -6.29657 0.41782 0.55686 1.37074 1.39215 1.45607 2.37657 3.04712 3.11943 3.70850 3.74199 4.07697 4.08832 4.42039 4.45564 4.58247 4.64633 4.78123 4.87900 4.89567 4.99422 5.03762 5.09597 5.27318 5.28376 5.30247 5.45121 5.52816 5.68425 5.79915 5.99645 6.18398 6.46986 6.76088 6.93978 7.18511 7.40709 8.87577 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.035892 B = 0.008685 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.929059 B = 3223.130940 C = 3541.180346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.541 5.541 3 C 0.059 3.941 4 C 0.203 3.797 5 H 0.039 0.961 6 C -0.549 4.549 7 H 0.052 0.948 8 C 0.029 3.971 9 N -0.913 5.913 10 Si 0.944 3.056 11 H -0.270 1.270 12 H -0.287 1.287 13 H -0.276 1.276 14 C -0.062 4.062 15 C -0.022 4.022 16 C -0.153 4.153 17 C 0.086 3.914 18 N -0.518 5.518 19 C 0.087 3.913 20 C -0.189 4.189 21 H 0.013 0.987 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.033 0.967 25 H 0.065 0.935 26 H 0.002 0.998 27 H 0.262 0.738 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.141 0.859 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 -4.845 -6.550 8.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.264 5.264 3 C -0.090 4.090 4 C 0.096 3.904 5 H 0.058 0.942 6 C -0.588 4.588 7 H 0.070 0.930 8 C -0.172 4.172 9 N -0.552 5.552 10 Si 0.770 3.230 11 H -0.195 1.195 12 H -0.212 1.212 13 H -0.201 1.201 14 C -0.100 4.100 15 C -0.030 4.030 16 C -0.173 4.173 17 C -0.070 4.070 18 N -0.229 5.229 19 C -0.069 4.069 20 C -0.209 4.209 21 H 0.031 0.969 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.158 0.842 31 H 0.194 0.806 32 H 0.189 0.811 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.241 -5.317 -7.639 9.573 hybrid contribution -0.800 1.275 2.827 3.203 sum -3.041 -4.042 -4.812 6.981 Atomic orbital electron populations 1.22187 0.88834 1.01123 0.99245 1.62598 1.07477 1.12516 1.43851 1.21830 0.98407 0.90392 0.98333 1.19284 0.96229 0.88438 0.86428 0.94237 1.21765 0.94851 1.38480 1.03742 0.92989 1.25654 0.95236 0.94930 1.01382 1.70017 1.07946 1.42165 1.35056 0.85840 0.78125 0.78526 0.80521 1.19503 1.21231 1.20101 1.20732 0.98892 0.97070 0.93327 1.20564 0.94267 0.91826 0.96298 1.22064 1.02299 1.00416 0.92482 1.23081 0.90191 0.93946 0.99760 1.67657 1.11873 1.16882 1.26444 1.22931 1.00172 0.96396 0.87378 1.22176 0.96074 1.01796 1.00881 0.96856 0.91775 0.91772 0.94779 0.91654 0.97895 0.92853 0.92509 0.91301 0.84165 0.80587 0.81066 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.27 8.90 127.69 1.14 2.41 16 2 N -0.54 -22.72 4.38 -927.75 -4.07 -26.79 16 3 C 0.06 2.56 9.36 127.69 1.19 3.75 16 4 C 0.20 9.55 1.99 44.17 0.09 9.64 16 5 H 0.04 2.18 6.77 -2.39 -0.02 2.16 16 6 C -0.55 -28.14 6.45 25.60 0.17 -27.98 16 7 H 0.05 2.65 6.88 -2.91 -0.02 2.63 16 8 C 0.03 1.54 5.45 84.65 0.46 2.00 16 9 N -0.91 -51.02 12.64 21.45 0.27 -50.75 16 10 Si 0.94 42.17 29.54 68.60 2.03 44.20 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 14 C -0.06 -2.49 4.81 29.85 0.14 -2.35 16 15 C -0.02 -0.78 4.97 -19.66 -0.10 -0.88 16 16 C -0.15 -4.86 9.49 22.36 0.21 -4.65 16 17 C 0.09 2.55 11.18 84.68 0.95 3.49 16 18 N -0.52 -16.77 10.36 -195.84 -2.03 -18.79 16 19 C 0.09 2.73 11.18 84.68 0.95 3.68 16 20 C -0.19 -6.56 9.82 22.36 0.22 -6.34 16 21 H 0.01 0.53 6.41 -2.39 -0.02 0.52 16 22 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.06 2.14 6.39 -2.38 -0.02 2.13 16 24 H 0.03 1.57 7.99 -2.38 -0.02 1.55 16 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.00 0.12 7.67 -2.39 -0.02 0.10 16 27 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.06 2.36 8.10 -2.39 -0.02 2.34 16 29 H 0.07 2.59 6.38 -2.39 -0.02 2.57 16 30 H 0.14 4.04 7.99 -2.91 -0.02 4.02 16 31 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.17 4.26 8.06 -2.91 -0.02 4.23 16 33 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -58.41 275.21 2.70 -55.71 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.08 Total: 13.64 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 5.42 Total: -17.23 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -5.83 Total: -96.33 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -58.41 2.70 -55.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802051.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.350 kcal (2) G-P(sol) polarization free energy of solvation -58.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds