Wall clock time and date at job start Mon Mar 30 2020 03:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34945 * 126.04008 * 2 1 4 4 C 1.35310 * 107.74869 * 180.02562 * 3 2 1 5 5 C 1.39863 * 107.92082 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.89945 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47405 * 124.99900 * 6 5 4 8 8 C 1.52995 * 109.47567 * 174.90045 * 7 6 5 9 9 C 1.50710 * 115.54896 * 40.00509 * 8 7 6 10 10 H 1.07997 * 119.99926 * 274.32982 * 9 8 7 11 11 C 1.37874 * 119.99708 * 94.32525 * 9 8 7 12 12 N 1.31515 * 120.00148 * 354.68415 * 11 9 8 13 13 Si 1.86801 * 119.99761 * 174.68302 * 11 9 8 14 14 H 1.48500 * 109.47242 * 59.99722 * 13 11 9 15 15 H 1.48495 * 109.47170 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47051 * 300.00130 * 13 11 9 17 17 C 1.53002 * 117.50255 * 254.30345 * 8 7 6 18 18 C 1.53003 * 117.50465 * 185.67681 * 8 7 6 19 19 N 1.30832 * 108.20474 * 0.26194 * 5 4 3 20 20 H 1.08996 * 109.46961 * 89.99902 * 1 2 3 21 21 H 1.08996 * 109.47071 * 210.00368 * 1 2 3 22 22 H 1.08995 * 109.47008 * 330.00229 * 1 2 3 23 23 H 1.07998 * 126.12381 * 359.96419 * 3 2 1 24 24 H 1.08001 * 126.04118 * 179.97438 * 4 3 2 25 25 H 1.09004 * 109.47352 * 244.99947 * 6 5 4 26 26 H 1.08996 * 109.47462 * 4.99853 * 6 5 4 27 27 H 1.08998 * 109.47201 * 294.90242 * 7 6 5 28 28 H 1.09003 * 109.46798 * 54.89947 * 7 6 5 29 29 H 0.96996 * 119.99815 * 184.99872 * 12 11 9 30 30 H 1.09003 * 117.49415 * 359.97438 * 17 8 7 31 31 H 1.08996 * 117.50384 * 145.01698 * 17 8 7 32 32 H 1.08994 * 117.49765 * 214.98429 * 18 8 7 33 33 H 1.09000 * 117.49368 * 359.97324 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 3.5347 -0.7321 -0.0003 6 6 4.7497 -1.6236 -0.0003 7 6 4.6715 -2.5922 1.1815 8 6 5.8379 -3.5797 1.1097 9 6 7.1604 -2.9939 0.6866 10 1 7.3981 -2.8990 -0.3626 11 6 8.0669 -2.5790 1.6390 12 7 7.7375 -2.5968 2.9122 13 14 9.7628 -1.9917 1.1211 14 1 9.6269 -0.8190 0.2204 15 1 10.5415 -1.6044 2.3248 16 1 10.4686 -3.0855 0.4065 17 6 5.5256 -5.0112 0.6689 18 6 5.8641 -4.7179 2.1319 19 7 2.2892 -1.1328 -0.0053 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.9282 2.1192 -0.0005 24 1 4.4211 1.2962 -0.0011 25 1 4.7857 -2.1889 -0.9316 26 1 5.6483 -1.0132 0.0891 27 1 4.7268 -2.0319 2.1148 28 1 3.7294 -3.1391 1.1413 29 1 8.3469 -2.2377 3.5758 30 1 4.4890 -5.2495 0.4305 31 1 6.2765 -5.5295 0.0727 32 1 6.8378 -5.0430 2.4981 33 1 5.0505 -4.7628 2.8559 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259820048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:13 Heat of formation + Delta-G solvation = 91.677969 kcal Electronic energy + Delta-G solvation = -14546.203093 eV Core-core repulsion = 12188.262439 eV Total energy + Delta-G solvation = -2357.940654 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74930 -36.69934 -33.70139 -31.79107 -30.75993 -29.47378 -26.35739 -25.22718 -22.97741 -20.87650 -20.76677 -19.02125 -18.78865 -16.62431 -15.69374 -15.16733 -14.56622 -13.96126 -13.70909 -13.59100 -13.20069 -12.72433 -12.40783 -12.24376 -11.98272 -11.18995 -11.09538 -10.86485 -10.73100 -10.48845 -10.33549 -9.96674 -9.74642 -9.24864 -8.77809 -8.69023 -8.26490 -8.17604 -7.77969 -5.91217 -3.97949 2.22056 2.82950 3.27719 3.35997 3.41171 3.43721 4.47716 4.70400 5.01580 5.14811 5.34796 5.35077 5.44767 5.56567 5.80753 6.11472 6.28083 6.40675 6.41284 6.53615 6.68144 6.83814 6.91986 6.96517 7.12694 7.28701 7.32309 7.37799 7.43220 7.70517 7.84992 7.97416 8.18614 8.58897 9.03702 9.66116 11.16292 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.033338 B = 0.007372 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.685704 B = 3797.284891 C = 4339.610627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.391 5.391 3 C 0.040 3.960 4 C -0.267 4.267 5 C 0.093 3.907 6 C -0.023 4.023 7 C -0.061 4.061 8 C 0.041 3.959 9 C -0.492 4.492 10 H 0.059 0.941 11 C 0.071 3.929 12 N -0.879 5.879 13 Si 0.885 3.115 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.278 1.278 17 C -0.218 4.218 18 C -0.152 4.152 19 N -0.300 5.300 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.167 0.833 24 H 0.145 0.855 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.035 0.965 29 H 0.259 0.741 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.847 6.727 -4.380 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.173 5.173 3 C -0.105 4.105 4 C -0.297 4.297 5 C -0.074 4.074 6 C -0.062 4.062 7 C -0.099 4.099 8 C 0.040 3.960 9 C -0.530 4.530 10 H 0.077 0.923 11 C -0.131 4.131 12 N -0.516 5.516 13 Si 0.713 3.287 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.256 4.256 18 C -0.189 4.189 19 N -0.122 5.122 20 H 0.086 0.914 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.184 0.816 24 H 0.163 0.837 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.717 5.730 -4.181 13.697 hybrid contribution 1.339 1.199 -0.095 1.800 sum -10.378 6.928 -4.276 13.190 Atomic orbital electron populations 1.21703 0.75168 1.03956 1.02689 1.48519 1.06212 1.04191 1.58384 1.22404 0.91464 0.93095 1.03528 1.21527 0.96736 0.95035 1.16364 1.22985 0.93791 0.94223 0.96372 1.20031 0.90585 0.95664 0.99936 1.20993 0.96229 0.96276 0.96445 1.18905 0.94044 0.84927 0.98104 1.20395 0.98392 1.41662 0.92502 0.92277 1.24969 0.97807 0.95473 0.94897 1.70006 1.36539 1.44811 1.00245 0.86776 0.84826 0.79196 0.77888 1.20172 1.21438 1.20323 1.23107 0.98554 1.04723 0.99170 1.22410 1.00146 1.06549 0.89808 1.77372 1.01733 1.07013 1.26109 0.91390 0.89638 0.90077 0.81594 0.83687 0.91184 0.88962 0.92743 0.94632 0.93131 0.92031 0.90842 0.89928 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.03 11.47 59.85 0.69 1.71 16 2 N -0.39 -5.88 4.01 -68.17 -0.27 -6.16 16 3 C 0.04 0.56 11.49 -17.23 -0.20 0.36 16 4 C -0.27 -4.46 10.72 -40.02 -0.43 -4.89 16 5 C 0.09 1.81 6.49 -82.41 -0.53 1.28 16 6 C -0.02 -0.49 5.16 -27.88 -0.14 -0.63 16 7 C -0.06 -1.43 5.31 -26.73 -0.14 -1.57 16 8 C 0.04 1.03 1.81 -155.66 -0.28 0.75 16 9 C -0.49 -13.29 7.39 -34.44 -0.25 -13.55 16 10 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 11 C 0.07 1.95 5.35 -17.82 -0.10 1.86 16 12 N -0.88 -25.13 12.30 55.43 0.68 -24.45 16 13 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C -0.22 -5.08 9.88 -26.73 -0.26 -5.34 16 18 C -0.15 -3.80 8.95 -26.73 -0.24 -4.04 16 19 N -0.30 -5.77 12.50 33.67 0.42 -5.35 16 20 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 24 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 25 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.09 2.02 7.41 -51.93 -0.38 1.64 16 27 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 29 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 30 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 31 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 32 H 0.08 2.21 7.91 -51.93 -0.41 1.80 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 284.25 15.07 4.28 4.28 Total: -1.00 -31.18 284.25 -6.78 -37.96 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.98 Total: 1.74 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -1.90 Total: -24.05 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.83 Total: -35.95 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.18 -6.78 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.642 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds