Wall clock time and date at job start Mon Mar 30 2020 03:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34945 * 126.04008 * 2 1 4 4 C 1.35310 * 107.74869 * 180.02562 * 3 2 1 5 5 C 1.39863 * 107.92082 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.89945 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47405 * 124.99900 * 6 5 4 8 8 C 1.52995 * 109.47567 * 174.90045 * 7 6 5 9 9 C 1.50710 * 115.54896 * 40.00509 * 8 7 6 10 10 H 1.07997 * 119.99926 * 274.32982 * 9 8 7 11 11 C 1.37874 * 119.99708 * 94.32525 * 9 8 7 12 12 N 1.31515 * 120.00148 * 354.68415 * 11 9 8 13 13 Si 1.86801 * 119.99761 * 174.68302 * 11 9 8 14 14 H 1.48500 * 109.47242 * 59.99722 * 13 11 9 15 15 H 1.48495 * 109.47170 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47051 * 300.00130 * 13 11 9 17 17 C 1.53002 * 117.50255 * 254.30345 * 8 7 6 18 18 C 1.53003 * 117.50465 * 185.67681 * 8 7 6 19 19 N 1.30832 * 108.20474 * 0.26194 * 5 4 3 20 20 H 1.08996 * 109.46961 * 89.99902 * 1 2 3 21 21 H 1.08996 * 109.47071 * 210.00368 * 1 2 3 22 22 H 1.08995 * 109.47008 * 330.00229 * 1 2 3 23 23 H 1.07998 * 126.12381 * 359.96419 * 3 2 1 24 24 H 1.08001 * 126.04118 * 179.97438 * 4 3 2 25 25 H 1.09004 * 109.47352 * 244.99947 * 6 5 4 26 26 H 1.08996 * 109.47462 * 4.99853 * 6 5 4 27 27 H 1.08998 * 109.47201 * 294.90242 * 7 6 5 28 28 H 1.09003 * 109.46798 * 54.89947 * 7 6 5 29 29 H 0.96996 * 119.99815 * 184.99872 * 12 11 9 30 30 H 1.09003 * 117.49415 * 359.97438 * 17 8 7 31 31 H 1.08996 * 117.50384 * 145.01698 * 17 8 7 32 32 H 1.08994 * 117.49765 * 214.98429 * 18 8 7 33 33 H 1.09000 * 117.49368 * 359.97324 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 3.5347 -0.7321 -0.0003 6 6 4.7497 -1.6236 -0.0003 7 6 4.6715 -2.5922 1.1815 8 6 5.8379 -3.5797 1.1097 9 6 7.1604 -2.9939 0.6866 10 1 7.3981 -2.8990 -0.3626 11 6 8.0669 -2.5790 1.6390 12 7 7.7375 -2.5968 2.9122 13 14 9.7628 -1.9917 1.1211 14 1 9.6269 -0.8190 0.2204 15 1 10.5415 -1.6044 2.3248 16 1 10.4686 -3.0855 0.4065 17 6 5.5256 -5.0112 0.6689 18 6 5.8641 -4.7179 2.1319 19 7 2.2892 -1.1328 -0.0053 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.9282 2.1192 -0.0005 24 1 4.4211 1.2962 -0.0011 25 1 4.7857 -2.1889 -0.9316 26 1 5.6483 -1.0132 0.0891 27 1 4.7268 -2.0319 2.1148 28 1 3.7294 -3.1391 1.1413 29 1 8.3469 -2.2377 3.5758 30 1 4.4890 -5.2495 0.4305 31 1 6.2765 -5.5295 0.0727 32 1 6.8378 -5.0430 2.4981 33 1 5.0505 -4.7628 2.8559 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259820048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:13 Heat of formation + Delta-G solvation = 73.695653 kcal Electronic energy + Delta-G solvation = -14546.982865 eV Core-core repulsion = 12188.262439 eV Total energy + Delta-G solvation = -2358.720426 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.98113 -38.63901 -35.03794 -33.88311 -32.16542 -30.77281 -27.78089 -27.10395 -24.55685 -22.83610 -21.94000 -20.83525 -20.35356 -17.77468 -17.68003 -16.62180 -16.25891 -15.66239 -15.22969 -15.10572 -14.58303 -14.12744 -13.81014 -13.62991 -13.26839 -12.91483 -12.84923 -12.75215 -12.60817 -12.29446 -12.10531 -11.80817 -11.36438 -11.16937 -10.72781 -10.31647 -10.08920 -9.75991 -9.37707 -8.01068 -6.13355 1.04178 1.46655 1.48196 1.55082 1.80721 1.93018 2.48297 3.25031 3.57085 3.72916 4.00277 4.23365 4.43334 4.48405 4.51192 4.54751 4.71527 4.77818 4.82469 4.95929 5.00367 5.04758 5.06453 5.18884 5.31730 5.45394 5.53109 5.71534 5.80942 5.82736 5.91619 6.30149 6.50205 6.88365 6.93591 7.53475 9.06300 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.033338 B = 0.007372 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.685704 B = 3797.284891 C = 4339.610627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.387 5.387 3 C 0.066 3.934 4 C -0.299 4.299 5 C 0.065 3.935 6 C -0.010 4.010 7 C -0.045 4.045 8 C 0.015 3.985 9 C -0.501 4.501 10 H 0.057 0.943 11 C 0.025 3.975 12 N -0.911 5.911 13 Si 0.947 3.053 14 H -0.267 1.267 15 H -0.288 1.288 16 H -0.274 1.274 17 C -0.195 4.195 18 C -0.159 4.159 19 N -0.339 5.339 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.120 0.880 23 H 0.220 0.780 24 H 0.152 0.848 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.037 0.963 29 H 0.258 0.742 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.131 8.180 -5.344 15.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.169 5.169 3 C -0.081 4.081 4 C -0.328 4.328 5 C -0.100 4.100 6 C -0.049 4.049 7 C -0.084 4.084 8 C 0.015 3.985 9 C -0.539 4.539 10 H 0.075 0.925 11 C -0.175 4.175 12 N -0.549 5.549 13 Si 0.773 3.227 14 H -0.192 1.192 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.232 4.232 18 C -0.197 4.197 19 N -0.163 5.163 20 H 0.105 0.895 21 H 0.100 0.900 22 H 0.138 0.862 23 H 0.237 0.763 24 H 0.170 0.830 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.015 7.167 -5.161 15.729 hybrid contribution 1.597 0.765 0.196 1.781 sum -11.418 7.933 -4.965 14.763 Atomic orbital electron populations 1.22166 0.72035 1.05766 1.04525 1.48944 1.07958 1.03449 1.56594 1.23110 0.90123 0.94837 1.00019 1.21758 0.98748 0.93945 1.18363 1.22739 0.93425 0.95356 0.98466 1.19708 0.91419 0.95225 0.98589 1.20781 0.95472 0.96024 0.96105 1.19118 0.94365 0.86099 0.98926 1.20638 0.99276 1.41499 0.92454 0.92457 1.25666 1.01213 0.95771 0.94853 1.70133 1.37702 1.45872 1.01178 0.85785 0.80417 0.78962 0.77537 1.19155 1.21386 1.19974 1.23093 0.99845 1.02770 0.97488 1.22298 0.99238 1.07234 0.90913 1.77233 1.02037 1.09590 1.27396 0.89494 0.89968 0.86213 0.76343 0.82990 0.91553 0.90564 0.95564 0.94400 0.93313 0.89841 0.90528 0.92225 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.48 11.47 127.77 1.47 2.95 16 2 N -0.39 -10.64 4.01 -369.58 -1.48 -12.13 16 3 C 0.07 1.61 11.49 83.54 0.96 2.57 16 4 C -0.30 -9.66 10.72 21.99 0.24 -9.42 16 5 C 0.07 2.55 6.49 43.10 0.28 2.83 16 6 C -0.01 -0.44 5.16 29.85 0.15 -0.29 16 7 C -0.05 -2.17 5.31 30.59 0.16 -2.01 16 8 C 0.02 0.79 1.81 -52.92 -0.10 0.69 16 9 C -0.50 -27.46 7.39 25.60 0.19 -27.27 16 10 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 11 C 0.02 1.37 5.35 84.65 0.45 1.82 16 12 N -0.91 -53.20 12.30 21.45 0.26 -52.94 16 13 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 15 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 C -0.19 -8.97 9.88 30.60 0.30 -8.67 16 18 C -0.16 -8.10 8.95 30.60 0.27 -7.83 16 19 N -0.34 -12.80 12.50 -47.39 -0.59 -13.39 16 20 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.22 2.85 8.06 -2.91 -0.02 2.83 16 24 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 25 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 26 H 0.08 3.47 7.41 -2.39 -0.02 3.46 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.75 7.89 -2.39 -0.02 1.73 16 29 H 0.26 14.45 8.32 -92.71 -0.77 13.68 16 30 H 0.08 3.46 8.08 -2.39 -0.02 3.45 16 31 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 32 H 0.06 3.27 7.91 -2.39 -0.02 3.25 16 33 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -68.36 284.25 5.66 -62.70 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.07 Total: 14.84 kcal Atomic # 6 Polarization: -49.01 SS G_CDS: 4.38 Total: -44.63 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -1.81 Total: -78.46 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.36 5.66 -62.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.393 kcal (2) G-P(sol) polarization free energy of solvation -68.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds