Wall clock time and date at job start Mon Mar 30 2020 03:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31065 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48499 * 109.47275 * 270.00350 * 3 2 1 5 5 H 1.48511 * 109.46892 * 29.99958 * 3 2 1 6 6 H 1.48502 * 109.47527 * 149.99646 * 3 2 1 7 7 C 1.39708 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00007 * 169.68958 * 7 2 1 9 9 C 1.40467 * 119.99671 * 349.69471 * 7 2 1 10 10 C 1.44349 * 123.75984 * 337.30165 * 9 7 2 11 11 C 1.32480 * 114.46723 * 179.97438 * 10 9 7 12 12 S 1.75458 * 111.44336 * 359.72907 * 11 10 9 13 13 C 1.39728 * 123.75218 * 157.28058 * 9 7 2 14 14 C 1.41559 * 125.25550 * 0.02562 * 13 9 7 15 15 C 1.38136 * 126.77652 * 179.97438 * 14 13 9 16 16 N 1.33706 * 107.21362 * 179.97438 * 15 14 13 17 17 C 1.30564 * 109.12613 * 0.02562 * 16 15 14 18 18 O 1.34004 * 109.48508 * 359.97438 * 17 16 15 19 19 H 0.97000 * 120.00202 * 359.97438 * 1 2 3 20 20 H 1.07998 * 122.75978 * 359.94452 * 10 9 7 21 21 H 1.08004 * 124.27572 * 179.97438 * 11 10 9 22 22 H 1.07998 * 126.39433 * 0.02562 * 15 14 13 23 23 H 1.08004 * 125.26138 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2447 1.6177 0.0000 4 1 2.4921 2.0465 -1.4000 5 1 1.4420 2.6527 0.7001 6 1 3.5422 1.4403 0.7001 7 6 2.0092 -1.2099 0.0005 8 1 3.0761 -1.2174 -0.1669 9 6 1.3239 -2.4164 0.2187 10 6 0.0532 -2.5058 0.8977 11 6 -0.4282 -3.7356 1.0014 12 16 0.6445 -4.9091 0.2592 13 6 1.7962 -3.6638 -0.1978 14 6 3.0120 -3.8887 -0.8870 15 6 3.5088 -5.1054 -1.3123 16 7 4.6770 -4.8663 -1.9171 17 6 4.9205 -3.5840 -1.8854 18 8 3.9171 -2.9537 -1.2596 19 1 -0.4850 0.8400 0.0004 20 1 -0.4623 -1.6412 1.2892 21 1 -1.3647 -3.9840 1.4788 22 1 3.0405 -6.0698 -1.1815 23 1 5.7955 -3.1051 -2.2995 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259859612.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:35 Heat of formation + Delta-G solvation = 15.288433 kcal Electronic energy + Delta-G solvation = -12331.451744 eV Core-core repulsion = 10043.566611 eV Total energy + Delta-G solvation = -2287.885133 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.61280 -38.33497 -35.28805 -35.03420 -32.53821 -29.95310 -27.22851 -24.16188 -23.23902 -22.37249 -20.65381 -19.38775 -17.62161 -17.25271 -17.14728 -17.09483 -15.58230 -14.83418 -14.58443 -14.27138 -13.91060 -13.64345 -13.38070 -12.99884 -12.89663 -12.10017 -12.08466 -11.99410 -11.45992 -11.32952 -11.07649 -10.54241 -9.13002 -8.99229 -8.53567 -6.45294 -0.03544 1.14978 1.32175 1.34054 1.36374 1.50054 1.59455 1.94989 2.11018 2.22103 2.62989 3.16295 3.73397 4.27739 4.38682 4.58798 4.89128 5.00457 5.21740 5.32212 5.42265 5.54590 5.77268 5.81324 6.24672 6.47247 6.59873 7.09425 7.98073 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.024259 B = 0.013509 C = 0.008818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.931513 B = 2072.216019 C = 3174.588230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.035 3.965 3 Si 0.994 3.006 4 H -0.260 1.260 5 H -0.253 1.253 6 H -0.258 1.258 7 C -0.409 4.409 8 H 0.089 0.911 9 C 0.093 3.907 10 C -0.127 4.127 11 C -0.194 4.194 12 S 0.031 5.969 13 C -0.385 4.385 14 C 0.124 3.876 15 C -0.159 4.159 16 N -0.490 5.490 17 C 0.090 3.910 18 O -0.215 6.215 19 H 0.304 0.696 20 H 0.146 0.854 21 H 0.180 0.820 22 H 0.172 0.828 23 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 2.023 1.136 2.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.177 1.177 6 H -0.181 1.181 7 C -0.438 4.438 8 H 0.107 0.893 9 C 0.083 3.917 10 C -0.159 4.159 11 C -0.328 4.328 12 S 0.286 5.714 13 C -0.500 4.500 14 C 0.069 3.931 15 C -0.298 4.298 16 N -0.218 5.218 17 C -0.133 4.133 18 O -0.104 6.104 19 H 0.115 0.885 20 H 0.163 0.837 21 H 0.198 0.802 22 H 0.189 0.811 23 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 0.729 0.225 0.682 1.023 hybrid contribution -0.193 2.410 0.346 2.442 sum 0.537 2.635 1.027 2.879 Atomic orbital electron populations 1.69821 1.08883 1.32327 1.30094 1.27043 0.95860 1.05044 0.90675 0.84991 0.79108 0.74581 0.80017 1.18440 1.17685 1.18142 1.19838 0.96796 0.90806 1.36389 0.89344 1.18616 0.91697 0.92181 0.89223 1.21559 0.96339 0.97312 1.00725 1.25472 1.04322 0.96216 1.06802 1.82659 1.14578 1.10331 1.63787 1.20072 1.03330 0.97545 1.29007 1.19757 0.89626 0.86730 0.96997 1.23121 0.96434 0.97772 1.12515 1.69780 1.16069 1.16959 1.18964 1.28480 0.95306 0.87319 1.02180 1.84596 1.28376 1.38431 1.58993 0.88459 0.83670 0.80234 0.81116 0.70456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.53 10.79 21.80 0.24 -35.30 14 2 C 0.03 1.55 5.38 85.16 0.46 2.01 14 3 Si 0.99 33.97 29.57 68.60 2.03 36.00 14 4 H -0.26 -8.73 7.11 99.48 0.71 -8.02 14 5 H -0.25 -7.87 7.11 99.48 0.71 -7.16 14 6 H -0.26 -8.86 7.11 99.48 0.71 -8.15 14 7 C -0.41 -20.74 8.62 23.17 0.20 -20.54 14 8 H 0.09 4.54 6.13 -2.91 -0.02 4.52 14 9 C 0.09 4.83 5.69 -20.82 -0.12 4.71 14 10 C -0.13 -5.94 9.03 22.69 0.21 -5.73 14 11 C -0.19 -7.93 11.05 66.69 0.74 -7.19 14 12 S 0.03 1.32 22.90 -56.49 -1.29 0.02 14 13 C -0.38 -19.55 6.33 23.45 0.15 -19.40 14 14 C 0.12 6.20 6.91 23.06 0.16 6.36 14 15 C -0.16 -7.35 11.65 84.38 0.98 -6.36 14 16 N -0.49 -21.29 11.25 -313.33 -3.52 -24.81 14 17 C 0.09 3.50 13.19 130.43 1.72 5.22 14 18 O -0.22 -10.14 8.63 -10.33 -0.09 -10.23 14 19 H 0.30 11.98 8.30 -92.71 -0.77 11.21 14 20 H 0.15 6.70 6.36 -2.91 -0.02 6.68 14 21 H 0.18 5.79 8.06 -2.91 -0.02 5.76 14 22 H 0.17 7.37 8.06 -2.91 -0.02 7.35 14 23 H 0.28 7.15 8.06 -2.91 -0.02 7.13 14 Total: -1.00 -59.02 227.28 3.10 -55.93 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 1.24 Total: 19.31 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 4.49 Total: -40.92 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -3.29 Total: -60.11 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.09 Total: -10.23 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.00 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.29 Total: 0.02 kcal Total: -59.02 3.10 -55.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859612.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.214 kcal (2) G-P(sol) polarization free energy of solvation -59.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds