Wall clock time and date at job start Mon Mar 30 2020 03:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 C 1.35319 * 126.12568 * 275.02653 * 12 2 1 14 14 C 1.39871 * 107.92134 * 179.97438 * 13 12 2 15 15 N 1.30838 * 108.19810 * 359.97438 * 14 13 12 16 16 N 1.34949 * 126.12857 * 94.71604 * 12 2 1 17 17 C 1.46503 * 126.03423 * 0.03536 * 16 12 2 18 18 C 1.53003 * 109.47045 * 90.00030 * 17 16 12 19 19 C 1.52999 * 117.49560 * 243.62242 * 18 17 16 20 20 C 1.53001 * 117.49645 * 174.99961 * 18 17 16 21 21 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 25 25 H 1.08001 * 126.03798 * 359.97438 * 13 12 2 26 26 H 1.07991 * 125.90291 * 180.02562 * 14 13 12 27 27 H 1.08998 * 109.46754 * 210.00331 * 17 16 12 28 28 H 1.09004 * 109.47058 * 329.99787 * 17 16 12 29 29 H 1.08994 * 115.54957 * 29.32755 * 18 17 16 30 30 H 1.08998 * 117.50054 * 359.97438 * 19 18 17 31 31 H 1.08994 * 117.49784 * 145.02364 * 19 18 17 32 32 H 1.08994 * 117.49488 * 214.98063 * 20 18 17 33 33 H 1.09002 * 117.49571 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 6 2.0323 -0.7104 -1.2305 13 6 2.2079 -2.0454 -1.3651 14 6 2.6863 -2.2885 -2.6568 15 7 2.7935 -1.1407 -3.2756 16 7 2.3820 -0.1299 -2.3974 17 6 2.3412 1.3045 -2.6927 18 6 3.6826 1.9400 -2.3215 19 6 3.6830 2.9901 -1.2088 20 6 3.8833 3.4175 -2.6642 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.9040 -0.5274 4.4375 25 1 2.0131 -2.7914 -0.6088 26 1 2.9251 -3.2564 -3.0719 27 1 2.1513 1.4513 -3.7559 28 1 1.5450 1.7722 -2.1135 29 1 4.5499 1.2839 -2.3951 30 1 2.7276 3.2286 -0.7415 31 1 4.5507 3.0250 -0.5501 32 1 4.8827 3.7336 -2.9630 33 1 3.0598 3.9367 -3.1545 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259870210.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:15 Heat of formation + Delta-G solvation = 98.762201 kcal Electronic energy + Delta-G solvation = -15098.814420 eV Core-core repulsion = 12741.180961 eV Total energy + Delta-G solvation = -2357.633459 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.55318 -37.33334 -34.61137 -32.24359 -31.45851 -28.32475 -26.46271 -25.11763 -22.36165 -22.09647 -21.09242 -20.08904 -18.70825 -16.65442 -16.13624 -15.08033 -14.98891 -14.52456 -14.03944 -13.40368 -13.16648 -12.72099 -12.61339 -12.26303 -12.03357 -11.53706 -11.44203 -11.31010 -11.09935 -10.68821 -10.37341 -10.12512 -9.99786 -9.89312 -9.46730 -9.15680 -8.69266 -8.48457 -7.66002 -6.12788 -4.12955 2.63102 3.09094 3.20649 3.28201 3.33156 3.65302 3.89918 4.33105 4.75332 4.90089 5.03796 5.18882 5.23186 5.43712 5.57574 5.63683 5.70623 5.75931 6.01774 6.11864 6.18026 6.26446 6.29667 6.45726 6.50399 6.61623 6.76975 7.02024 7.32201 7.43446 7.57152 7.81659 8.41887 8.50339 8.93318 9.46570 10.99807 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022858 B = 0.011897 C = 0.009025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.644919 B = 2352.953376 C = 3101.739497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 H 0.038 0.962 4 C -0.506 4.506 5 H 0.084 0.916 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.141 3.859 13 C -0.272 4.272 14 C 0.038 3.962 15 N -0.326 5.326 16 N -0.380 5.380 17 C 0.169 3.831 18 C -0.168 4.168 19 C -0.171 4.171 20 C -0.176 4.176 21 H 0.046 0.954 22 H 0.027 0.973 23 H 0.059 0.941 24 H 0.265 0.735 25 H 0.146 0.854 26 H 0.173 0.827 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 5.921 -10.136 11.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.045 3.955 3 H 0.056 0.944 4 C -0.544 4.544 5 H 0.102 0.898 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.014 3.986 13 C -0.300 4.300 14 C -0.148 4.148 15 N -0.147 5.147 16 N -0.162 5.162 17 C 0.046 3.954 18 C -0.188 4.188 19 C -0.208 4.208 20 C -0.213 4.213 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.163 0.837 26 H 0.190 0.810 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.062 6.626 -11.071 12.902 hybrid contribution -0.733 0.312 1.068 1.332 sum -0.795 6.938 -10.002 12.199 Atomic orbital electron populations 1.22143 0.97778 1.01553 0.98586 1.17987 0.91909 0.95978 0.89633 0.94406 1.20894 1.32207 1.13809 0.87528 0.89847 1.24946 0.95675 0.96528 0.95758 1.69870 1.45319 1.40183 0.97926 0.86904 0.80777 0.83854 0.76985 1.20475 1.22355 1.19315 1.21541 0.95643 0.93624 0.87762 1.21211 1.15019 0.95628 0.98180 1.23711 1.00084 0.96587 0.94386 1.77140 1.24435 0.95744 1.17339 1.48464 1.52179 1.05620 1.09968 1.21054 0.96143 0.76208 1.01947 1.22663 0.99333 0.91894 1.04878 1.23081 1.03927 1.02535 0.91275 1.22953 1.02842 0.96343 0.99182 0.93567 0.95430 0.92145 0.92500 0.83656 0.81028 0.89211 0.89246 0.87263 0.88400 0.88439 0.88713 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.66 37.16 0.32 -2.70 16 2 C 0.07 1.51 1.90 -92.92 -0.18 1.33 16 3 H 0.04 0.87 6.56 -51.93 -0.34 0.53 16 4 C -0.51 -13.72 8.83 -34.44 -0.30 -14.03 16 5 H 0.08 2.47 7.07 -52.49 -0.37 2.10 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 8 Si 0.88 21.00 24.37 -169.99 -4.14 16.85 16 9 H -0.28 -6.44 6.87 56.52 0.39 -6.05 16 10 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.27 -5.95 6.53 56.52 0.37 -5.58 16 12 C 0.14 3.04 5.85 -82.26 -0.48 2.56 16 13 C -0.27 -5.70 9.70 -40.01 -0.39 -6.09 16 14 C 0.04 0.70 12.03 -17.36 -0.21 0.49 16 15 N -0.33 -6.40 12.58 30.62 0.39 -6.01 16 16 N -0.38 -7.41 3.61 -57.13 -0.21 -7.61 16 17 C 0.17 2.66 6.32 -4.04 -0.03 2.64 16 18 C -0.17 -2.51 6.01 -90.62 -0.54 -3.06 16 19 C -0.17 -2.43 10.18 -26.73 -0.27 -2.70 16 20 C -0.18 -2.05 10.25 -26.73 -0.27 -2.32 16 21 H 0.05 1.00 3.27 -51.93 -0.17 0.83 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 25 H 0.15 3.08 7.65 -52.49 -0.40 2.68 16 26 H 0.17 2.50 8.06 -52.49 -0.42 2.08 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.09 1.35 7.28 -51.93 -0.38 0.97 16 29 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 30 H 0.10 1.42 8.03 -51.93 -0.42 1.00 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 273.41 15.07 4.12 4.12 Total: -1.00 -30.16 273.41 -6.16 -36.33 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.64 Total: 4.09 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -2.45 Total: -21.94 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.95 Total: -39.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.14 Total: 16.85 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.16 -6.16 -36.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870210.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.087 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds