Wall clock time and date at job start Mon Mar 30 2020 03:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 C 1.35319 * 126.12568 * 275.02653 * 12 2 1 14 14 C 1.39871 * 107.92134 * 179.97438 * 13 12 2 15 15 N 1.30838 * 108.19810 * 359.97438 * 14 13 12 16 16 N 1.34949 * 126.12857 * 94.71604 * 12 2 1 17 17 C 1.46503 * 126.03423 * 0.03536 * 16 12 2 18 18 C 1.53003 * 109.47045 * 90.00030 * 17 16 12 19 19 C 1.52999 * 117.49560 * 243.62242 * 18 17 16 20 20 C 1.53001 * 117.49645 * 174.99961 * 18 17 16 21 21 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 25 25 H 1.08001 * 126.03798 * 359.97438 * 13 12 2 26 26 H 1.07991 * 125.90291 * 180.02562 * 14 13 12 27 27 H 1.08998 * 109.46754 * 210.00331 * 17 16 12 28 28 H 1.09004 * 109.47058 * 329.99787 * 17 16 12 29 29 H 1.08994 * 115.54957 * 29.32755 * 18 17 16 30 30 H 1.08998 * 117.50054 * 359.97438 * 19 18 17 31 31 H 1.08994 * 117.49784 * 145.02364 * 19 18 17 32 32 H 1.08994 * 117.49488 * 214.98063 * 20 18 17 33 33 H 1.09002 * 117.49571 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 6 2.0323 -0.7104 -1.2305 13 6 2.2079 -2.0454 -1.3651 14 6 2.6863 -2.2885 -2.6568 15 7 2.7935 -1.1407 -3.2756 16 7 2.3820 -0.1299 -2.3974 17 6 2.3412 1.3045 -2.6927 18 6 3.6826 1.9400 -2.3215 19 6 3.6830 2.9901 -1.2088 20 6 3.8833 3.4175 -2.6642 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.9040 -0.5274 4.4375 25 1 2.0131 -2.7914 -0.6088 26 1 2.9251 -3.2564 -3.0719 27 1 2.1513 1.4513 -3.7559 28 1 1.5450 1.7722 -2.1135 29 1 4.5499 1.2839 -2.3951 30 1 2.7276 3.2286 -0.7415 31 1 4.5507 3.0250 -0.5501 32 1 4.8827 3.7336 -2.9630 33 1 3.0598 3.9367 -3.1545 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259870210.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:15 Heat of formation + Delta-G solvation = 80.412075 kcal Electronic energy + Delta-G solvation = -15099.610141 eV Core-core repulsion = 12741.180961 eV Total energy + Delta-G solvation = -2358.429180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.08827 -38.43906 -36.47444 -33.84793 -33.27713 -29.95384 -27.79431 -27.10571 -23.95240 -23.30489 -22.36716 -21.53099 -20.27019 -18.57583 -17.79842 -16.68195 -16.35327 -15.95981 -15.49545 -15.01838 -14.62777 -14.35403 -14.28779 -13.94574 -13.46082 -13.16264 -12.93663 -12.65594 -12.56020 -12.39608 -11.93076 -11.65531 -11.42726 -11.26661 -11.17813 -10.95719 -10.76292 -10.01412 -9.27523 -8.26944 -6.32394 1.06478 1.33192 1.37243 1.47957 1.69812 2.06470 2.33580 2.83347 3.07895 3.60589 3.76882 3.90800 4.00095 4.06731 4.21601 4.37456 4.52240 4.54806 4.67326 4.75266 4.76745 4.81848 4.97224 4.98031 5.07209 5.15904 5.21865 5.37146 5.53406 5.67220 5.91273 6.15619 6.40778 6.73617 6.91825 7.30990 8.89248 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022858 B = 0.011897 C = 0.009025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.644919 B = 2352.953376 C = 3101.739497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.071 3.929 3 H 0.043 0.957 4 C -0.509 4.509 5 H 0.040 0.960 6 C 0.016 3.984 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.265 1.265 10 H -0.300 1.300 11 H -0.239 1.239 12 C 0.121 3.879 13 C -0.293 4.293 14 C 0.044 3.956 15 N -0.331 5.331 16 N -0.377 5.377 17 C 0.160 3.840 18 C -0.189 4.189 19 C -0.188 4.188 20 C -0.137 4.137 21 H 0.043 0.957 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.266 0.734 25 H 0.130 0.870 26 H 0.210 0.790 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 8.069 -12.129 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.051 3.949 3 H 0.061 0.939 4 C -0.547 4.547 5 H 0.058 0.942 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.771 3.229 9 H -0.191 1.191 10 H -0.228 1.228 11 H -0.162 1.162 12 C -0.006 4.006 13 C -0.322 4.322 14 C -0.141 4.141 15 N -0.152 5.152 16 N -0.160 5.160 17 C 0.040 3.960 18 C -0.208 4.208 19 C -0.225 4.225 20 C -0.175 4.175 21 H 0.062 0.938 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.148 0.852 26 H 0.226 0.774 27 H 0.130 0.870 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.069 8.790 -13.104 15.815 hybrid contribution -0.319 -0.447 1.657 1.745 sum -1.388 8.344 -11.448 14.233 Atomic orbital electron populations 1.22059 0.95955 1.01715 1.00019 1.17816 0.93285 0.95529 0.88319 0.93865 1.21078 1.31271 1.12674 0.89722 0.94216 1.25802 0.97200 0.99959 0.95160 1.70030 1.47488 1.42492 0.98624 0.85912 0.79191 0.80095 0.77689 1.19082 1.22803 1.16221 1.21382 0.96860 0.94014 0.88353 1.21301 1.16108 0.95592 0.99191 1.24205 0.98835 0.97910 0.93138 1.77107 1.24367 0.96095 1.17642 1.48716 1.51281 1.06942 1.09021 1.21411 0.96882 0.74176 1.03549 1.22546 0.98119 0.93311 1.06845 1.23132 1.03667 1.03143 0.92595 1.23083 1.04651 0.93132 0.96607 0.93808 0.92096 0.92798 0.92466 0.85170 0.77370 0.86972 0.88322 0.89648 0.88541 0.89180 0.87193 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 8.66 71.98 0.62 -4.98 16 2 C 0.07 3.21 1.90 -12.29 -0.02 3.19 16 3 H 0.04 1.91 6.56 -2.39 -0.02 1.89 16 4 C -0.51 -28.33 8.83 25.60 0.23 -28.10 16 5 H 0.04 2.49 7.07 -2.91 -0.02 2.47 16 6 C 0.02 0.91 5.45 84.65 0.46 1.37 16 7 N -0.95 -58.07 13.96 21.45 0.30 -57.77 16 8 Si 0.94 42.52 24.37 68.60 1.67 44.19 16 9 H -0.26 -11.33 6.87 99.48 0.68 -10.65 16 10 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.24 -9.54 6.53 99.48 0.65 -8.89 16 12 C 0.12 5.19 5.85 41.41 0.24 5.44 16 13 C -0.29 -12.42 9.70 21.99 0.21 -12.20 16 14 C 0.04 1.59 12.03 85.24 1.03 2.62 16 15 N -0.33 -12.45 12.58 -57.03 -0.72 -13.17 16 16 N -0.38 -14.13 3.61 -334.68 -1.21 -15.34 16 17 C 0.16 4.64 6.32 86.38 0.55 5.18 16 18 C -0.19 -5.27 6.01 -10.79 -0.06 -5.33 16 19 C -0.19 -4.96 10.18 30.60 0.31 -4.64 16 20 C -0.14 -2.71 10.25 30.60 0.31 -2.40 16 21 H 0.04 1.77 3.27 -2.39 -0.01 1.76 16 22 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H 0.13 5.79 7.65 -2.91 -0.02 5.77 16 26 H 0.21 5.62 8.06 -2.92 -0.02 5.60 16 27 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.10 2.65 7.28 -2.38 -0.02 2.63 16 29 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.10 2.55 8.03 -2.39 -0.02 2.53 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 32 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -66.45 273.41 4.93 -61.52 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 1.01 Total: 20.42 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 3.87 Total: -39.86 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.63 Total: -86.28 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.67 Total: 44.19 kcal Total: -66.45 4.93 -61.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870210.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.933 kcal (2) G-P(sol) polarization free energy of solvation -66.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds