Wall clock time and date at job start Mon Mar 30 2020 03:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.44710 * 111.00389 * 2 1 4 4 C 1.54084 * 110.74430 * 154.18767 * 3 2 1 5 5 C 1.51972 * 106.71236 * 79.19361 * 4 3 2 6 6 C 1.38659 * 127.25383 * 116.03150 * 5 4 3 7 7 C 1.40021 * 106.74725 * 179.67822 * 6 5 4 8 8 C 1.39949 * 126.33655 * 179.97438 * 7 6 5 9 9 H 1.07995 * 119.99889 * 180.02562 * 8 7 6 10 10 C 1.40065 * 120.00079 * 0.04470 * 8 7 6 11 11 N 1.30870 * 119.99690 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00215 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47234 * 60.00028 * 12 10 8 14 14 H 1.48498 * 109.47531 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47062 * 300.00135 * 12 10 8 16 16 N 1.38287 * 107.32574 * 0.02562 * 7 6 5 17 17 H 0.97005 * 125.84841 * 180.02562 * 16 7 6 18 18 C 1.35705 * 124.25969 * 295.72687 * 5 4 3 19 19 C 1.52098 * 123.97845 * 0.43826 * 18 5 4 20 20 C 1.44686 * 111.00337 * 225.38219 * 2 1 3 21 21 H 1.08993 * 109.47122 * 194.61440 * 1 2 3 22 22 H 1.08998 * 109.47008 * 314.62101 * 1 2 3 23 23 H 1.09001 * 109.46699 * 74.61837 * 1 2 3 24 24 H 1.09004 * 109.21333 * 274.58261 * 3 2 1 25 25 H 1.09005 * 109.21253 * 33.94566 * 3 2 1 26 26 H 1.08997 * 110.20285 * 319.82851 * 4 3 2 27 27 H 1.08993 * 109.90497 * 198.40035 * 4 3 2 28 28 H 1.08001 * 126.62711 * 359.66391 * 6 5 4 29 29 H 0.97004 * 119.99569 * 179.97438 * 11 10 8 30 30 H 1.08997 * 109.96254 * 183.07793 * 19 18 5 31 31 H 1.08988 * 109.97058 * 304.38791 * 19 18 5 32 32 H 1.08999 * 109.19671 * 85.54380 * 20 2 1 33 33 H 1.08998 * 109.15582 * 326.24729 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9876 1.3510 0.0000 4 6 3.3943 1.3955 0.6274 5 6 4.3641 0.9156 -0.4396 6 6 5.3808 1.6438 -1.0385 7 6 6.0088 0.7859 -1.9497 8 6 7.0914 1.1041 -2.7774 9 1 7.4974 0.3593 -3.4458 10 6 7.6487 2.3886 -2.7388 11 7 7.1573 3.2909 -1.9283 12 14 9.0942 2.8132 -3.8431 13 1 8.7007 2.6355 -5.2639 14 1 9.4954 4.2243 -3.6128 15 1 10.2362 1.9170 -3.5300 16 7 5.3605 -0.4337 -1.8812 17 1 5.5788 -1.2231 -2.4009 18 6 4.3667 -0.3369 -0.9620 19 6 3.3898 -1.4295 -0.5553 20 6 1.9875 -0.9487 -0.9615 21 1 -0.3633 -0.9943 0.2593 22 1 -0.3633 0.7218 0.7314 23 1 -0.3633 0.2726 -0.9909 24 1 2.0395 1.7153 -1.0260 25 1 1.3191 1.9919 0.5748 26 1 3.4403 0.7377 1.4953 27 1 3.6380 2.4168 0.9198 28 1 5.6384 2.6738 -0.8406 29 1 7.5435 4.1803 -1.9013 30 1 3.6307 -2.3565 -1.0757 31 1 3.4325 -1.5846 0.5226 32 1 2.0413 -0.4734 -1.9409 33 1 1.3165 -1.8060 -1.0157 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259971606.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:14 Heat of formation + Delta-G solvation = 17.580055 kcal Electronic energy + Delta-G solvation = -15034.650742 eV Core-core repulsion = 12673.496961 eV Total energy + Delta-G solvation = -2361.153781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.27299 -38.60013 -35.39569 -33.52910 -32.73424 -29.94263 -29.22732 -26.58118 -24.89566 -24.20486 -21.58777 -21.12045 -19.31943 -18.83976 -17.43403 -16.36207 -16.20101 -15.82542 -15.54615 -14.86617 -14.48902 -14.05801 -13.73418 -13.53117 -13.41390 -12.98438 -12.87990 -12.63676 -12.48690 -12.27838 -12.10708 -12.05287 -11.87046 -11.48832 -11.13833 -11.08064 -9.03564 -8.82824 -8.55008 -8.34724 -6.04822 1.35630 1.39366 1.52369 1.98875 2.25110 2.65616 3.04796 3.16550 3.51165 4.06846 4.25336 4.44485 4.50148 4.59048 4.67768 4.68465 4.79202 4.85737 4.92321 5.06489 5.07967 5.14336 5.28157 5.30588 5.36391 5.60224 6.00599 6.10542 6.32805 6.38723 6.47595 6.60163 6.96865 7.19334 7.37762 7.68776 8.56248 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.055105 B = 0.007288 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.999260 B = 3841.015165 C = 4132.743818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.588 5.588 3 C 0.100 3.900 4 C -0.034 4.034 5 C -0.172 4.172 6 C -0.316 4.316 7 C 0.169 3.831 8 C -0.490 4.490 9 H 0.070 0.930 10 C 0.022 3.978 11 N -0.838 5.838 12 Si 0.997 3.003 13 H -0.263 1.263 14 H -0.270 1.270 15 H -0.262 1.262 16 N -0.589 5.589 17 H 0.401 0.599 18 C -0.089 4.089 19 C -0.022 4.022 20 C 0.096 3.904 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.016 0.984 24 H -0.001 1.001 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.125 0.875 29 H 0.277 0.723 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.002 0.998 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 -5.472 1.930 10.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.313 5.313 3 C -0.028 4.028 4 C -0.073 4.073 5 C -0.179 4.179 6 C -0.340 4.340 7 C 0.058 3.942 8 C -0.525 4.525 9 H 0.088 0.912 10 C -0.190 4.190 11 N -0.467 5.467 12 Si 0.818 3.182 13 H -0.187 1.187 14 H -0.195 1.195 15 H -0.187 1.187 16 N -0.191 5.191 17 H 0.236 0.764 18 C -0.197 4.197 19 C -0.061 4.061 20 C -0.032 4.032 21 H 0.100 0.900 22 H 0.095 0.905 23 H 0.035 0.965 24 H 0.018 0.982 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.020 0.980 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.641 -5.510 2.324 10.508 hybrid contribution 0.850 0.497 -1.542 1.830 sum -7.790 -5.013 0.783 9.297 Atomic orbital electron populations 1.22355 0.85046 1.03444 0.99918 1.57575 1.07966 1.10971 1.54795 1.21512 0.95568 0.88069 0.97654 1.20399 0.92227 0.99386 0.95241 1.19516 1.00940 0.94569 1.02912 1.21510 1.03986 1.00843 1.07634 1.18502 0.94325 0.83695 0.97660 1.18720 1.13861 0.98438 1.21496 0.91178 1.26612 1.00511 0.95071 0.96807 1.69930 1.38853 1.04641 1.33266 0.85039 0.77077 0.77865 0.78230 1.18749 1.19495 1.18659 1.41825 1.29185 1.11807 1.36270 0.76432 1.20335 0.99152 0.98085 1.02092 1.20406 0.91017 0.93633 1.01017 1.21497 0.95646 0.94815 0.91223 0.90009 0.90550 0.96497 0.98238 0.89405 0.91282 0.92577 0.85700 0.91208 0.90438 0.90475 0.97955 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 9.48 127.69 1.21 2.08 16 2 N -0.59 -17.79 4.13 -930.36 -3.85 -21.64 16 3 C 0.10 3.47 5.41 87.08 0.47 3.94 16 4 C -0.03 -1.39 6.13 30.62 0.19 -1.20 16 5 C -0.17 -8.63 5.22 -19.94 -0.10 -8.73 16 6 C -0.32 -18.64 9.76 22.80 0.22 -18.41 16 7 C 0.17 9.76 6.91 38.97 0.27 10.03 16 8 C -0.49 -27.93 9.45 23.13 0.22 -27.72 16 9 H 0.07 3.74 7.85 -2.91 -0.02 3.71 16 10 C 0.02 1.17 5.50 85.28 0.47 1.64 16 11 N -0.84 -47.67 10.26 21.86 0.22 -47.45 16 12 Si 1.00 40.96 29.56 68.60 2.03 42.99 16 13 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 14 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 15 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 16 N -0.59 -28.80 6.16 -173.72 -1.07 -29.87 16 17 H 0.40 16.82 8.96 -92.70 -0.83 15.99 16 18 C -0.09 -4.08 6.37 41.82 0.27 -3.82 16 19 C -0.02 -0.75 6.14 30.53 0.19 -0.56 16 20 C 0.10 2.97 5.39 86.96 0.47 3.44 16 21 H 0.08 1.48 8.02 -2.39 -0.02 1.46 16 22 H 0.08 1.48 7.63 -2.39 -0.02 1.46 16 23 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 24 H 0.00 -0.03 7.88 -2.38 -0.02 -0.05 16 25 H 0.09 2.51 7.48 -2.38 -0.02 2.49 16 26 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.13 7.91 5.72 -2.91 -0.02 7.89 16 29 H 0.28 14.40 8.30 -92.71 -0.77 13.63 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.00 0.08 7.88 -2.39 -0.02 0.06 16 33 H 0.10 2.30 7.71 -2.39 -0.02 2.28 16 Total: -1.00 -67.03 265.33 1.48 -65.55 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.27 Total: 29.73 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 3.87 Total: -39.32 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -4.69 Total: -98.96 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -67.03 1.48 -65.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971606.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.131 kcal (2) G-P(sol) polarization free energy of solvation -67.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds