Wall clock time and date at job start Mon Mar 30 2020 02:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47020 * 2 1 4 4 N 1.46504 * 109.47085 * 240.00018 * 2 1 3 5 5 C 1.37469 * 126.56269 * 60.02776 * 4 2 1 6 6 C 1.39996 * 125.96497 * 359.97438 * 5 4 2 7 7 H 1.07991 * 119.99930 * 357.07963 * 6 5 4 8 8 C 1.40237 * 119.99991 * 177.08003 * 6 5 4 9 9 N 1.30688 * 120.00188 * 6.68887 * 8 6 5 10 10 Si 1.86806 * 119.99838 * 186.68947 * 8 6 5 11 11 H 1.48498 * 109.47102 * 94.97207 * 10 8 6 12 12 H 1.48497 * 109.46680 * 214.97212 * 10 8 6 13 13 H 1.48493 * 109.47009 * 334.97055 * 10 8 6 14 14 N 1.32875 * 108.07995 * 179.97438 * 5 4 2 15 15 C 1.33186 * 109.30675 * 359.97438 * 14 5 4 16 16 C 1.36069 * 108.39223 * 359.74730 * 15 14 5 17 17 C 1.51221 * 110.27384 * 180.33627 * 16 15 14 18 18 C 1.54433 * 105.01077 * 17.10888 * 17 16 15 19 19 C 1.51433 * 141.61898 * 179.97438 * 15 14 5 20 20 H 1.09004 * 109.46809 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47005 * 59.99895 * 1 2 3 22 22 H 1.09001 * 109.47251 * 299.99983 * 1 2 3 23 23 H 1.08997 * 109.47271 * 119.99666 * 2 1 3 24 24 H 1.09001 * 109.47095 * 59.99921 * 3 2 1 25 25 H 1.09001 * 109.47103 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47341 * 300.00471 * 3 2 1 27 27 H 0.97000 * 119.99951 * 179.97438 * 9 8 6 28 28 H 1.09004 * 110.32740 * 135.98999 * 17 16 15 29 29 H 1.08996 * 110.33701 * 258.12026 * 17 16 15 30 30 H 1.09000 * 110.87216 * 92.29342 * 18 17 16 31 31 H 1.08997 * 110.86836 * 215.77114 * 18 17 16 32 32 H 1.09004 * 110.32153 * 281.90824 * 19 15 14 33 33 H 1.08998 * 110.32416 * 44.10621 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.7713 -0.3402 -2.5023 6 6 1.0018 0.7482 -2.9301 7 1 0.5010 1.3733 -2.2057 8 6 0.8812 1.0268 -4.2992 9 7 1.3764 0.1987 -5.1807 10 14 0.0129 2.5817 -4.8631 11 1 1.0155 3.6524 -5.0946 12 1 -0.7206 2.3090 -6.1251 13 1 -0.9465 3.0196 -3.8177 14 7 2.3902 -1.2149 -3.2881 15 6 3.0246 -2.1116 -2.5349 16 6 2.8119 -1.8013 -1.2272 17 6 3.5226 -2.7910 -0.3315 18 6 4.5530 -3.4894 -1.2455 19 6 3.8968 -3.3451 -2.6389 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.2927 0.3912 -6.1277 28 1 4.0289 -2.2704 0.4814 29 1 2.8144 -3.5171 0.0676 30 1 5.5150 -2.9783 -1.2078 31 1 4.6624 -4.5398 -0.9756 32 1 3.2898 -4.2192 -2.8751 33 1 4.6664 -3.2017 -3.3974 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259988476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:04 Heat of formation + Delta-G solvation = 54.749230 kcal Electronic energy + Delta-G solvation = -15342.584813 eV Core-core repulsion = 12983.042809 eV Total energy + Delta-G solvation = -2359.542004 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28572 -35.93158 -34.20095 -32.97522 -29.47750 -27.84968 -26.64138 -26.43772 -24.53853 -21.56794 -20.45985 -18.41631 -18.18355 -16.56124 -15.25019 -14.89087 -14.68159 -13.85822 -13.49036 -12.97424 -12.53063 -12.20969 -12.07343 -11.91747 -11.64052 -11.50104 -11.33038 -11.13460 -10.77994 -10.72627 -10.50948 -10.37644 -10.22327 -10.05583 -9.74308 -9.06104 -7.73832 -7.51120 -6.74851 -6.33136 -4.16635 3.07117 3.18116 3.20220 3.65892 4.01962 4.28791 4.70812 5.28635 5.39857 5.50752 5.53893 5.61651 5.74483 5.85560 6.02701 6.06038 6.10151 6.26255 6.31269 6.37484 6.40118 6.51817 6.56137 6.67407 6.79602 6.81961 6.85684 7.35121 7.50594 7.80687 8.20625 8.33091 8.66331 9.04566 9.46318 10.34489 10.60198 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.028708 B = 0.011420 C = 0.008715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.096439 B = 2451.200020 C = 3212.057815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.151 3.849 3 C -0.165 4.165 4 N -0.481 5.481 5 C 0.390 3.610 6 C -0.464 4.464 7 H 0.085 0.915 8 C 0.082 3.918 9 N -0.743 5.743 10 Si 0.904 3.096 11 H -0.272 1.272 12 H -0.278 1.278 13 H -0.265 1.265 14 N -0.504 5.504 15 C -0.005 4.005 16 C -0.181 4.181 17 C -0.008 4.008 18 C -0.112 4.112 19 C -0.027 4.027 20 H 0.051 0.949 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.270 0.730 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 -0.745 7.690 7.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 C -0.223 4.223 4 N -0.171 5.171 5 C 0.148 3.852 6 C -0.503 4.503 7 H 0.102 0.898 8 C -0.141 4.141 9 N -0.368 5.368 10 Si 0.729 3.271 11 H -0.198 1.198 12 H -0.204 1.204 13 H -0.189 1.189 14 N -0.224 5.224 15 C -0.139 4.139 16 C -0.293 4.293 17 C -0.047 4.047 18 C -0.150 4.150 19 C -0.066 4.066 20 H 0.070 0.930 21 H 0.100 0.900 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.954 -0.769 6.738 6.849 hybrid contribution -0.435 0.757 0.705 1.122 sum 0.518 -0.012 7.443 7.461 Atomic orbital electron populations 1.22227 0.95154 1.02143 1.02815 1.20765 0.94299 0.93106 0.87248 1.22212 1.01135 0.96157 1.02814 1.44880 1.42723 1.23148 1.06311 1.20113 0.95225 0.94689 0.75201 1.18195 1.29708 1.10111 0.92287 0.89751 1.25695 0.94916 0.97077 0.96430 1.70031 1.32646 1.32293 1.01790 0.86382 0.79764 0.82127 0.78818 1.19770 1.20352 1.18866 1.70779 1.16958 1.05393 1.29310 1.21430 1.03073 0.98513 0.90855 1.20825 1.11715 0.98260 0.98494 1.19980 0.95274 0.94082 0.95325 1.22319 0.97934 0.99256 0.95499 1.20197 0.96337 0.94031 0.96011 0.92997 0.89978 0.92624 0.91301 0.92648 0.92998 0.89962 0.91882 0.93751 0.93082 0.91684 0.91565 0.91942 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.20 37.16 0.34 -2.64 16 2 C 0.15 2.96 3.43 -67.93 -0.23 2.73 16 3 C -0.17 -2.97 9.20 37.16 0.34 -2.63 16 4 N -0.48 -11.82 2.66 -104.22 -0.28 -12.09 16 5 C 0.39 11.00 7.02 -155.76 -1.09 9.90 16 6 C -0.46 -12.49 7.46 -38.17 -0.28 -12.78 16 7 H 0.08 2.08 4.50 -52.49 -0.24 1.85 16 8 C 0.08 2.18 5.49 -17.29 -0.09 2.09 16 9 N -0.74 -21.12 11.92 55.56 0.66 -20.46 16 10 Si 0.90 19.31 29.57 -169.99 -5.03 14.28 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 14 N -0.50 -15.10 9.43 -8.71 -0.08 -15.19 16 15 C -0.01 -0.13 7.96 -82.42 -0.66 -0.79 16 16 C -0.18 -4.35 7.62 -81.02 -0.62 -4.97 16 17 C -0.01 -0.15 6.78 -26.88 -0.18 -0.33 16 18 C -0.11 -1.85 7.13 -25.09 -0.18 -2.03 16 19 C -0.03 -0.55 6.79 -26.63 -0.18 -0.73 16 20 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 21 H 0.08 1.64 5.52 -51.93 -0.29 1.35 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.63 5.63 -51.93 -0.29 1.34 16 27 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 266.43 15.07 4.02 4.02 Total: -1.00 -32.14 266.43 -8.14 -40.28 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.60 Total: 1.35 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -2.84 Total: -12.18 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.30 Total: -47.74 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.14 -8.14 -40.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259988476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.032 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds