Wall clock time and date at job start Mon Mar 30 2020 03:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46524 * 2 1 4 4 C 1.50696 * 109.47353 * 240.00133 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99950 * 4 2 1 6 6 C 1.37884 * 120.00126 * 59.99809 * 4 2 1 7 7 N 1.31514 * 119.99707 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 0.27447 * 6 4 2 9 9 H 1.48503 * 109.47407 * 269.72718 * 8 6 4 10 10 H 1.48505 * 109.47281 * 29.72474 * 8 6 4 11 11 H 1.48501 * 109.47274 * 149.72572 * 8 6 4 12 12 C 1.50702 * 109.47032 * 119.99524 * 2 1 3 13 13 N 1.30733 * 125.87734 * 60.03202 * 12 2 1 14 14 N 1.39994 * 108.21749 * 179.97438 * 13 12 2 15 15 C 1.46493 * 126.03798 * 180.02562 * 14 13 12 16 16 C 1.35224 * 107.93409 * 359.97438 * 14 13 12 17 17 C 1.35142 * 107.74404 * 359.72947 * 16 14 13 18 18 C 1.51365 * 110.24435 * 179.74710 * 17 16 14 19 19 C 1.54439 * 105.07316 * 343.48292 * 18 17 16 20 20 C 1.51320 * 141.94845 * 179.97438 * 16 14 13 21 21 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47457 * 300.00097 * 1 2 3 23 23 H 1.09001 * 109.47420 * 60.00438 * 1 2 3 24 24 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.47279 * 89.97269 * 15 14 13 26 26 H 1.08999 * 109.47526 * 209.97765 * 15 14 13 27 27 H 1.09000 * 109.46951 * 329.97738 * 15 14 13 28 28 H 1.09003 * 110.49703 * 224.47707 * 18 17 16 29 29 H 1.09000 * 110.19413 * 102.33071 * 18 17 16 30 30 H 1.09005 * 110.92522 * 267.32223 * 19 18 17 31 31 H 1.09002 * 110.95700 * 143.68966 * 19 18 17 32 32 H 1.08996 * 110.33584 * 315.80471 * 20 16 14 33 33 H 1.09002 * 110.33746 * 77.94705 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 2.1374 -0.8596 -3.5565 8 14 0.6317 1.2839 -2.6542 9 1 -0.7975 0.8837 -2.7035 10 1 0.8552 2.1787 -1.4903 11 1 0.9885 2.0003 -3.9051 12 6 2.0324 -0.7103 1.2305 13 7 1.7889 -1.9544 1.5501 14 7 2.4340 -2.2293 2.7618 15 6 2.4197 -3.5089 3.4748 16 6 3.0738 -1.1055 3.1572 17 6 2.8472 -0.1531 2.2256 18 6 3.5359 1.1367 2.6170 19 6 3.8662 0.9765 4.1171 20 6 3.9461 -0.5585 4.2661 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.9028 -0.5284 -4.4376 25 1 3.2550 -4.1223 3.1374 26 1 2.5104 -3.3290 4.5460 27 1 1.4828 -4.0276 3.2716 28 1 2.8703 1.9863 2.4643 29 1 4.4513 1.2649 2.0392 30 1 3.0690 1.3867 4.7372 31 1 4.8222 1.4415 4.3576 32 1 3.5600 -0.8653 5.2381 33 1 4.9740 -0.8996 4.1426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259993641.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:02 Heat of formation + Delta-G solvation = 81.193737 kcal Electronic energy + Delta-G solvation = -14998.921889 eV Core-core repulsion = 12640.526605 eV Total energy + Delta-G solvation = -2358.395284 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96183 -35.97200 -34.74605 -32.29072 -30.68673 -27.96090 -27.65470 -25.47716 -24.86499 -22.11208 -20.82070 -19.04538 -18.21664 -16.42118 -16.05815 -15.56779 -14.69585 -14.39135 -13.37474 -13.10705 -12.87711 -12.62235 -12.56173 -12.27070 -12.24017 -12.01075 -11.60620 -11.04287 -10.97275 -10.87621 -10.66052 -10.30096 -10.05983 -9.73665 -9.28393 -9.05838 -8.49088 -8.23077 -7.55347 -5.97959 -3.96172 2.46749 2.96240 3.34390 3.43439 3.46319 3.60269 4.48229 4.60780 4.87647 4.96966 5.11182 5.33766 5.38948 5.53122 5.58654 5.62297 5.72017 5.83206 5.91093 6.05270 6.29195 6.35843 6.42127 6.50218 6.60379 6.79574 6.86614 7.04389 7.42200 7.56032 7.67679 7.78804 8.55574 8.66392 9.08300 9.62306 11.15489 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.034387 B = 0.009016 C = 0.008021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.065098 B = 3104.696820 C = 3489.977006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 H 0.045 0.955 4 C -0.499 4.499 5 H 0.075 0.925 6 C 0.069 3.931 7 N -0.902 5.902 8 Si 0.887 3.113 9 H -0.279 1.279 10 H -0.265 1.265 11 H -0.297 1.297 12 C 0.149 3.851 13 N -0.280 5.280 14 N -0.377 5.377 15 C 0.109 3.891 16 C 0.030 3.970 17 C -0.255 4.255 18 C -0.042 4.042 19 C -0.114 4.114 20 C -0.038 4.038 21 H 0.057 0.943 22 H 0.028 0.972 23 H 0.042 0.958 24 H 0.263 0.737 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 1.776 16.543 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.059 3.941 3 H 0.062 0.938 4 C -0.537 4.537 5 H 0.093 0.907 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.718 3.282 9 H -0.206 1.206 10 H -0.190 1.190 11 H -0.225 1.225 12 C -0.018 4.018 13 N -0.099 5.099 14 N -0.158 5.158 15 C -0.033 4.033 16 C -0.097 4.097 17 C -0.267 4.267 18 C -0.080 4.080 19 C -0.152 4.152 20 C -0.077 4.077 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.577 0.508 16.103 16.188 hybrid contribution -0.183 1.159 -0.057 1.174 sum 1.394 1.666 16.045 16.192 Atomic orbital electron populations 1.22103 0.98118 1.01246 0.98374 1.17853 0.91886 0.95243 0.89158 0.93754 1.20879 1.31734 1.13232 0.87873 0.90720 1.24972 0.95816 0.96718 0.95708 1.69897 1.45837 1.40450 0.97830 0.86853 0.80614 0.83850 0.76931 1.20598 1.18974 1.22506 1.22193 0.94022 0.90248 0.95307 1.77540 1.20146 1.16439 0.95781 1.47967 1.40630 1.08644 1.18535 1.21638 1.03576 0.82942 0.95166 1.21621 0.99765 0.88322 0.99993 1.20860 1.09332 0.98039 0.98438 1.20324 0.99209 0.94398 0.94090 1.22352 1.01754 0.93963 0.97133 1.20590 0.97346 0.95487 0.94289 0.92413 0.95265 0.93981 0.92714 0.91618 0.90596 0.89797 0.91493 0.91153 0.91073 0.90522 0.91357 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.66 37.16 0.32 -3.00 16 2 C 0.08 2.03 2.31 -92.92 -0.22 1.81 16 3 H 0.04 1.12 7.16 -51.93 -0.37 0.74 16 4 C -0.50 -14.84 9.13 -34.44 -0.31 -15.16 16 5 H 0.07 2.48 7.98 -52.49 -0.42 2.06 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -28.46 13.96 55.43 0.77 -27.69 16 8 Si 0.89 22.45 24.38 -169.99 -4.14 18.31 16 9 H -0.28 -6.89 6.87 56.52 0.39 -6.50 16 10 H -0.26 -6.34 6.52 56.52 0.37 -5.97 16 11 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 12 C 0.15 3.55 5.67 -82.34 -0.47 3.09 16 13 N -0.28 -6.59 12.57 33.71 0.42 -6.16 16 14 N -0.38 -7.10 4.02 -63.65 -0.26 -7.36 16 15 C 0.11 1.42 11.47 59.84 0.69 2.10 16 16 C 0.03 0.53 7.57 -81.90 -0.62 -0.09 16 17 C -0.26 -5.14 6.82 -104.67 -0.71 -5.85 16 18 C -0.04 -0.65 6.78 -26.80 -0.18 -0.83 16 19 C -0.11 -1.31 7.12 -25.23 -0.18 -1.49 16 20 C -0.04 -0.46 6.79 -26.83 -0.18 -0.64 16 21 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 1.00 3.29 -51.93 -0.17 0.83 16 24 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 269.51 15.07 4.06 4.06 Total: -1.00 -34.58 269.51 -5.90 -40.47 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.79 Total: -3.53 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.96 Total: -18.10 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.94 Total: -41.21 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.58 -5.90 -40.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993641.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.669 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds