Wall clock time and date at job start Mon Mar 30 2020 03:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46524 * 2 1 4 4 C 1.50696 * 109.47353 * 240.00133 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99950 * 4 2 1 6 6 C 1.37884 * 120.00126 * 59.99809 * 4 2 1 7 7 N 1.31514 * 119.99707 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 0.27447 * 6 4 2 9 9 H 1.48503 * 109.47407 * 269.72718 * 8 6 4 10 10 H 1.48505 * 109.47281 * 29.72474 * 8 6 4 11 11 H 1.48501 * 109.47274 * 149.72572 * 8 6 4 12 12 C 1.50702 * 109.47032 * 119.99524 * 2 1 3 13 13 N 1.30733 * 125.87734 * 60.03202 * 12 2 1 14 14 N 1.39994 * 108.21749 * 179.97438 * 13 12 2 15 15 C 1.46493 * 126.03798 * 180.02562 * 14 13 12 16 16 C 1.35224 * 107.93409 * 359.97438 * 14 13 12 17 17 C 1.35142 * 107.74404 * 359.72947 * 16 14 13 18 18 C 1.51365 * 110.24435 * 179.74710 * 17 16 14 19 19 C 1.54439 * 105.07316 * 343.48292 * 18 17 16 20 20 C 1.51320 * 141.94845 * 179.97438 * 16 14 13 21 21 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47457 * 300.00097 * 1 2 3 23 23 H 1.09001 * 109.47420 * 60.00438 * 1 2 3 24 24 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.47279 * 89.97269 * 15 14 13 26 26 H 1.08999 * 109.47526 * 209.97765 * 15 14 13 27 27 H 1.09000 * 109.46951 * 329.97738 * 15 14 13 28 28 H 1.09003 * 110.49703 * 224.47707 * 18 17 16 29 29 H 1.09000 * 110.19413 * 102.33071 * 18 17 16 30 30 H 1.09005 * 110.92522 * 267.32223 * 19 18 17 31 31 H 1.09002 * 110.95700 * 143.68966 * 19 18 17 32 32 H 1.08996 * 110.33584 * 315.80471 * 20 16 14 33 33 H 1.09002 * 110.33746 * 77.94705 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 2.1374 -0.8596 -3.5565 8 14 0.6317 1.2839 -2.6542 9 1 -0.7975 0.8837 -2.7035 10 1 0.8552 2.1787 -1.4903 11 1 0.9885 2.0003 -3.9051 12 6 2.0324 -0.7103 1.2305 13 7 1.7889 -1.9544 1.5501 14 7 2.4340 -2.2293 2.7618 15 6 2.4197 -3.5089 3.4748 16 6 3.0738 -1.1055 3.1572 17 6 2.8472 -0.1531 2.2256 18 6 3.5359 1.1367 2.6170 19 6 3.8662 0.9765 4.1171 20 6 3.9461 -0.5585 4.2661 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.9028 -0.5284 -4.4376 25 1 3.2550 -4.1223 3.1374 26 1 2.5104 -3.3290 4.5460 27 1 1.4828 -4.0276 3.2716 28 1 2.8703 1.9863 2.4643 29 1 4.4513 1.2649 2.0392 30 1 3.0690 1.3867 4.7372 31 1 4.8222 1.4415 4.3576 32 1 3.5600 -0.8653 5.2381 33 1 4.9740 -0.8996 4.1426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259993641.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:02 Heat of formation + Delta-G solvation = 57.042517 kcal Electronic energy + Delta-G solvation = -14999.969165 eV Core-core repulsion = 12640.526605 eV Total energy + Delta-G solvation = -2359.442560 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.39053 -37.20936 -36.57378 -34.17869 -32.51774 -29.18967 -28.86004 -27.18457 -26.69466 -23.80518 -22.02217 -20.49262 -19.84379 -18.57822 -17.43363 -16.81054 -16.62606 -15.53536 -15.07541 -14.94711 -14.41440 -14.13651 -13.88111 -13.60635 -13.50825 -13.34026 -13.10531 -12.84445 -12.71758 -12.09750 -12.00720 -11.90266 -11.73236 -11.42072 -11.32055 -11.03012 -10.72488 -9.81589 -8.97910 -8.29799 -6.34482 1.05582 1.32014 1.37395 1.49465 1.68057 1.97311 2.33252 3.04638 3.48095 3.79750 3.88633 4.16433 4.26476 4.40604 4.45336 4.47411 4.61184 4.63239 4.71992 4.76573 4.85342 4.92667 5.02257 5.12547 5.16410 5.27667 5.39911 5.45053 5.55128 5.65679 5.90205 6.29211 6.38681 6.68109 7.03055 7.28202 8.87976 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.034387 B = 0.009016 C = 0.008021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.065098 B = 3104.696820 C = 3489.977006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.080 3.920 3 H 0.047 0.953 4 C -0.506 4.506 5 H 0.017 0.983 6 C 0.009 3.991 7 N -0.952 5.952 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.239 1.239 11 H -0.292 1.292 12 C 0.111 3.889 13 N -0.333 5.333 14 N -0.378 5.378 15 C 0.097 3.903 16 C 0.045 3.955 17 C -0.298 4.298 18 C -0.047 4.047 19 C -0.100 4.100 20 C -0.033 4.033 21 H 0.041 0.959 22 H 0.059 0.941 23 H 0.042 0.958 24 H 0.267 0.733 25 H 0.075 0.925 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.179 3.435 19.742 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 H 0.065 0.935 4 C -0.544 4.544 5 H 0.035 0.965 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.782 3.218 9 H -0.191 1.191 10 H -0.163 1.163 11 H -0.220 1.220 12 C -0.054 4.054 13 N -0.154 5.154 14 N -0.159 5.159 15 C -0.043 4.043 16 C -0.084 4.084 17 C -0.309 4.309 18 C -0.085 4.085 19 C -0.138 4.138 20 C -0.072 4.072 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.138 0.862 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.590 2.155 19.326 19.510 hybrid contribution -0.091 0.462 -0.996 1.102 sum 1.499 2.617 18.330 18.576 Atomic orbital electron populations 1.21973 0.96626 1.00725 0.99719 1.17698 0.93099 0.94889 0.88336 0.93480 1.21010 1.31118 1.11836 0.90477 0.96480 1.25943 0.97324 1.00542 0.94900 1.70061 1.47743 1.42787 0.98628 0.85732 0.78777 0.79455 0.77862 1.19129 1.16278 1.21963 1.22089 0.96229 0.91123 0.95934 1.77358 1.22475 1.16890 0.98655 1.48351 1.39592 1.10695 1.17291 1.22087 1.04094 0.81022 0.97098 1.22601 0.98268 0.86844 1.00700 1.21402 1.09998 1.01175 0.98322 1.20490 0.98380 0.92374 0.97258 1.22383 1.03972 0.93677 0.93730 1.20867 0.97115 0.95531 0.93651 0.93951 0.92254 0.93987 0.92383 0.90641 0.86202 0.89785 0.91563 0.91796 0.89611 0.87305 0.87861 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 8.66 71.98 0.62 -5.62 16 2 C 0.08 4.20 2.31 -12.28 -0.03 4.18 16 3 H 0.05 2.39 7.16 -2.39 -0.02 2.37 16 4 C -0.51 -31.73 9.13 25.60 0.23 -31.50 16 5 H 0.02 1.22 7.98 -2.91 -0.02 1.19 16 6 C 0.01 0.57 5.45 84.66 0.46 1.03 16 7 N -0.95 -62.67 13.96 21.45 0.30 -62.37 16 8 Si 0.96 46.57 24.38 68.60 1.67 48.24 16 9 H -0.27 -12.29 6.87 99.48 0.68 -11.61 16 10 H -0.24 -10.61 6.52 99.48 0.65 -9.96 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 12 C 0.11 5.45 5.67 43.19 0.24 5.70 16 13 N -0.33 -16.17 12.57 -47.25 -0.59 -16.76 16 14 N -0.38 -13.95 4.02 -355.28 -1.43 -15.38 16 15 C 0.10 2.33 11.47 127.77 1.47 3.80 16 16 C 0.04 1.48 7.57 41.52 0.31 1.79 16 17 C -0.30 -11.84 6.82 -19.90 -0.14 -11.98 16 18 C -0.05 -1.37 6.78 30.55 0.21 -1.16 16 19 C -0.10 -1.83 7.12 31.57 0.22 -1.60 16 20 C -0.03 -0.64 6.79 30.53 0.21 -0.44 16 21 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 22 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.04 1.93 3.29 -2.39 -0.01 1.93 16 24 H 0.27 16.29 8.31 -92.70 -0.77 15.52 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -81.31 269.51 4.78 -76.53 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.01 Total: 5.54 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 3.82 Total: -35.80 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -1.72 Total: -94.51 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.67 Total: 48.24 kcal Total: -81.31 4.78 -76.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993641.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.577 kcal (2) G-P(sol) polarization free energy of solvation -81.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds