Wall clock time and date at job start Mon Mar 30 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46771 * 2 1 4 4 C 1.50694 * 109.47219 * 120.00036 * 2 1 3 5 5 H 1.07999 * 119.99676 * 120.00224 * 4 2 1 6 6 C 1.37875 * 120.00100 * 299.99948 * 4 2 1 7 7 N 1.31517 * 119.99909 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00174 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47228 * 89.99836 * 8 6 4 10 10 H 1.48498 * 109.47560 * 210.00005 * 8 6 4 11 11 H 1.48500 * 109.46990 * 330.00229 * 8 6 4 12 12 C 1.50701 * 109.47027 * 240.00651 * 2 1 3 13 13 N 1.30739 * 125.87330 * 300.01953 * 12 2 1 14 14 N 1.40000 * 108.21094 * 180.02562 * 13 12 2 15 15 C 1.46506 * 126.02865 * 179.97438 * 14 13 12 16 16 C 1.35214 * 107.93687 * 0.22495 * 14 13 12 17 17 C 1.35134 * 107.74879 * 359.63709 * 16 14 13 18 18 C 1.51368 * 110.24983 * 180.24616 * 17 16 14 19 19 C 1.54705 * 104.90993 * 342.72109 * 18 17 16 20 20 C 1.51321 * 141.94621 * 179.77339 * 16 14 13 21 21 H 1.08995 * 109.46647 * 300.00015 * 1 2 3 22 22 H 1.08994 * 109.47109 * 59.99779 * 1 2 3 23 23 H 1.08996 * 109.46914 * 180.02562 * 1 2 3 24 24 H 0.97004 * 119.99777 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.47060 * 90.02915 * 15 14 13 26 26 H 1.09004 * 109.47073 * 210.02404 * 15 14 13 27 27 H 1.09000 * 109.47212 * 330.02486 * 15 14 13 28 28 H 1.08998 * 110.33462 * 102.17621 * 18 17 16 29 29 H 1.09003 * 110.33269 * 224.41528 * 18 17 16 30 30 H 1.09006 * 111.25102 * 267.85897 * 19 18 17 31 31 H 1.08992 * 110.74163 * 144.13830 * 19 18 17 32 32 H 1.09001 * 110.33885 * 315.80994 * 20 16 14 33 33 H 1.09001 * 110.34010 * 77.94207 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3446 -0.9490 5.1123 11 1 2.4882 -2.5653 3.7121 12 6 2.0324 -0.7103 -1.2306 13 7 1.7880 -1.9541 -1.5506 14 7 2.4335 -2.2291 -2.7621 15 6 2.4184 -3.5086 -3.4755 16 6 3.0779 -1.1070 -3.1547 17 6 2.8423 -0.1514 -2.2287 18 6 3.5359 1.1368 -2.6171 19 6 4.5866 0.7203 -3.6735 20 6 3.9568 -0.5624 -4.2595 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 0.7090 1.1614 3.4844 25 1 1.5761 -3.5291 -4.1671 26 1 3.3484 -3.6252 -4.0321 27 1 2.3196 -4.3234 -2.7583 28 1 2.8187 1.8406 -3.0394 29 1 4.0334 1.5749 -1.7519 30 1 5.5491 0.5045 -3.2096 31 1 4.6892 1.4887 -4.4396 32 1 4.7336 -1.2830 -4.5156 33 1 3.3573 -0.3246 -5.1382 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259993645.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:05 Heat of formation + Delta-G solvation = 72.767864 kcal Electronic energy + Delta-G solvation = -14951.063533 eV Core-core repulsion = 12592.302875 eV Total energy + Delta-G solvation = -2358.760658 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.84530 -35.85836 -34.54027 -32.29312 -29.94963 -27.82203 -27.55888 -25.23354 -24.92880 -21.92698 -20.72695 -18.90990 -18.23324 -15.96316 -15.93563 -15.54179 -14.52506 -14.33705 -13.28962 -12.84392 -12.77228 -12.56060 -12.39934 -12.14304 -11.97411 -11.57217 -11.12243 -10.87497 -10.80978 -10.78882 -10.61907 -10.26913 -10.05778 -9.73487 -9.38458 -8.91422 -8.28017 -8.10974 -7.45456 -5.91104 -3.95277 2.55166 3.05488 3.37170 3.42816 3.48022 3.74266 4.53348 4.68663 4.95402 5.03493 5.18508 5.39733 5.42066 5.60782 5.61692 5.69821 5.79102 5.96820 6.04614 6.14098 6.45646 6.54243 6.58609 6.91690 7.01373 7.18116 7.32134 7.64889 7.72522 7.78650 8.01235 8.19787 8.46584 8.76492 9.05665 9.67422 11.15175 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.032338 B = 0.008462 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.654877 B = 3308.161308 C = 3567.472609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.112 3.888 3 H 0.044 0.956 4 C -0.496 4.496 5 H 0.055 0.945 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.145 3.855 13 N -0.288 5.288 14 N -0.380 5.380 15 C 0.110 3.890 16 C 0.027 3.973 17 C -0.255 4.255 18 C -0.041 4.041 19 C -0.114 4.114 20 C -0.037 4.037 21 H 0.087 0.913 22 H 0.006 0.994 23 H 0.031 0.969 24 H 0.260 0.740 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -2.118 -13.206 14.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.091 3.909 3 H 0.062 0.938 4 C -0.535 4.535 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.022 4.022 13 N -0.107 5.107 14 N -0.162 5.162 15 C -0.032 4.032 16 C -0.100 4.100 17 C -0.266 4.266 18 C -0.080 4.080 19 C -0.152 4.152 20 C -0.077 4.077 21 H 0.105 0.895 22 H 0.025 0.975 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.623 -3.271 -12.823 14.018 hybrid contribution 0.669 -0.006 0.578 0.884 sum 5.292 -3.277 -12.245 13.736 Atomic orbital electron populations 1.21729 0.97363 0.99605 1.00033 1.17437 0.92827 0.94505 0.86114 0.93757 1.21039 1.30722 1.11983 0.89727 0.92631 1.24920 0.95214 0.95092 0.98813 1.69886 1.37022 1.23047 1.23287 0.86563 0.78483 0.80140 0.82652 1.20759 1.21228 1.20005 1.22811 0.93342 0.90119 0.95900 1.77534 1.20264 1.17083 0.95804 1.47981 1.40829 1.08556 1.18793 1.21605 1.01880 0.83526 0.96216 1.21610 1.00239 0.88516 0.99659 1.20912 1.09675 0.97547 0.98501 1.20361 0.95785 0.93972 0.97852 1.22404 0.98710 0.95804 0.98318 1.20580 0.96100 0.96716 0.94262 0.89488 0.97484 0.94980 0.93030 0.91873 0.90722 0.89891 0.91471 0.91187 0.90948 0.90694 0.91459 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.95 37.16 0.33 -3.04 16 2 C 0.11 3.02 2.72 -92.92 -0.25 2.77 16 3 H 0.04 1.25 8.12 -51.93 -0.42 0.83 16 4 C -0.50 -14.46 8.55 -34.44 -0.29 -14.75 16 5 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -26.04 11.32 55.43 0.63 -25.41 16 8 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.14 3.59 5.67 -82.33 -0.47 3.12 16 13 N -0.29 -6.94 12.57 33.72 0.42 -6.52 16 14 N -0.38 -7.39 4.02 -63.64 -0.26 -7.65 16 15 C 0.11 1.48 11.47 59.85 0.69 2.16 16 16 C 0.03 0.49 7.57 -81.90 -0.62 -0.13 16 17 C -0.25 -5.35 6.81 -104.67 -0.71 -6.06 16 18 C -0.04 -0.68 6.80 -26.66 -0.18 -0.86 16 19 C -0.11 -1.42 7.14 -25.08 -0.18 -1.60 16 20 C -0.04 -0.48 6.78 -26.82 -0.18 -0.66 16 21 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 22 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 23 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 276.33 15.07 4.16 4.16 Total: -1.00 -32.87 276.33 -6.95 -39.82 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.93 Total: -4.13 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -1.96 Total: -17.43 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.80 Total: -39.58 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.87 -6.95 -39.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993645.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.590 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds