Wall clock time and date at job start Mon Mar 30 2020 03:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46771 * 2 1 4 4 C 1.50694 * 109.47219 * 120.00036 * 2 1 3 5 5 H 1.07999 * 119.99676 * 120.00224 * 4 2 1 6 6 C 1.37875 * 120.00100 * 299.99948 * 4 2 1 7 7 N 1.31517 * 119.99909 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00174 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47228 * 89.99836 * 8 6 4 10 10 H 1.48498 * 109.47560 * 210.00005 * 8 6 4 11 11 H 1.48500 * 109.46990 * 330.00229 * 8 6 4 12 12 C 1.50701 * 109.47027 * 240.00651 * 2 1 3 13 13 N 1.30739 * 125.87330 * 300.01953 * 12 2 1 14 14 N 1.40000 * 108.21094 * 180.02562 * 13 12 2 15 15 C 1.46506 * 126.02865 * 179.97438 * 14 13 12 16 16 C 1.35214 * 107.93687 * 0.22495 * 14 13 12 17 17 C 1.35134 * 107.74879 * 359.63709 * 16 14 13 18 18 C 1.51368 * 110.24983 * 180.24616 * 17 16 14 19 19 C 1.54705 * 104.90993 * 342.72109 * 18 17 16 20 20 C 1.51321 * 141.94621 * 179.77339 * 16 14 13 21 21 H 1.08995 * 109.46647 * 300.00015 * 1 2 3 22 22 H 1.08994 * 109.47109 * 59.99779 * 1 2 3 23 23 H 1.08996 * 109.46914 * 180.02562 * 1 2 3 24 24 H 0.97004 * 119.99777 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.47060 * 90.02915 * 15 14 13 26 26 H 1.09004 * 109.47073 * 210.02404 * 15 14 13 27 27 H 1.09000 * 109.47212 * 330.02486 * 15 14 13 28 28 H 1.08998 * 110.33462 * 102.17621 * 18 17 16 29 29 H 1.09003 * 110.33269 * 224.41528 * 18 17 16 30 30 H 1.09006 * 111.25102 * 267.85897 * 19 18 17 31 31 H 1.08992 * 110.74163 * 144.13830 * 19 18 17 32 32 H 1.09001 * 110.33885 * 315.80994 * 20 16 14 33 33 H 1.09001 * 110.34010 * 77.94207 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3446 -0.9490 5.1123 11 1 2.4882 -2.5653 3.7121 12 6 2.0324 -0.7103 -1.2306 13 7 1.7880 -1.9541 -1.5506 14 7 2.4335 -2.2291 -2.7621 15 6 2.4184 -3.5086 -3.4755 16 6 3.0779 -1.1070 -3.1547 17 6 2.8423 -0.1514 -2.2287 18 6 3.5359 1.1368 -2.6171 19 6 4.5866 0.7203 -3.6735 20 6 3.9568 -0.5624 -4.2595 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 0.7090 1.1614 3.4844 25 1 1.5761 -3.5291 -4.1671 26 1 3.3484 -3.6252 -4.0321 27 1 2.3196 -4.3234 -2.7583 28 1 2.8187 1.8406 -3.0394 29 1 4.0334 1.5749 -1.7519 30 1 5.5491 0.5045 -3.2096 31 1 4.6892 1.4887 -4.4396 32 1 4.7336 -1.2830 -4.5156 33 1 3.3573 -0.3246 -5.1382 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259993645.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:04 Heat of formation + Delta-G solvation = 52.108454 kcal Electronic energy + Delta-G solvation = -14951.959392 eV Core-core repulsion = 12592.302875 eV Total energy + Delta-G solvation = -2359.656517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.33774 -37.15041 -36.46941 -34.06707 -31.85903 -29.13478 -28.82713 -27.27252 -26.54425 -23.69992 -22.02154 -20.41081 -19.89698 -18.12563 -17.33531 -16.81718 -16.54198 -15.50226 -14.93760 -14.66303 -14.35812 -13.84076 -13.61710 -13.54408 -13.31470 -13.25160 -12.90473 -12.79664 -12.68979 -12.24393 -12.12638 -11.92341 -11.80603 -11.54770 -11.22804 -10.93870 -10.49659 -9.75257 -8.95023 -8.11587 -6.24491 1.08490 1.38035 1.39344 1.50363 1.72269 2.02153 2.44119 3.15041 3.50540 3.82366 3.91358 4.26365 4.35826 4.43290 4.51056 4.57227 4.63870 4.77176 4.86075 4.91031 4.96880 5.10770 5.15326 5.25441 5.28104 5.39975 5.44824 5.54296 5.79413 5.90048 6.07014 6.30466 6.42734 6.78764 7.08790 7.41486 8.93745 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.032338 B = 0.008462 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.654877 B = 3308.161308 C = 3567.472609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.112 3.888 3 H 0.019 0.981 4 C -0.517 4.517 5 H 0.036 0.964 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.109 3.891 13 N -0.334 5.334 14 N -0.379 5.379 15 C 0.098 3.902 16 C 0.046 3.954 17 C -0.303 4.303 18 C -0.045 4.045 19 C -0.102 4.102 20 C -0.030 4.030 21 H 0.068 0.932 22 H 0.021 0.979 23 H 0.020 0.980 24 H 0.265 0.735 25 H 0.084 0.916 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 -2.759 -15.316 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.092 3.908 3 H 0.037 0.963 4 C -0.556 4.556 5 H 0.055 0.945 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.783 3.217 9 H -0.196 1.196 10 H -0.200 1.200 11 H -0.203 1.203 12 C -0.056 4.056 13 N -0.155 5.155 14 N -0.161 5.161 15 C -0.042 4.042 16 C -0.083 4.083 17 C -0.314 4.314 18 C -0.084 4.084 19 C -0.139 4.139 20 C -0.069 4.069 21 H 0.086 0.914 22 H 0.040 0.960 23 H 0.040 0.960 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.133 0.867 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.210 -3.915 -14.936 16.643 hybrid contribution 0.160 0.147 1.154 1.174 sum 6.370 -3.768 -13.782 15.644 Atomic orbital electron populations 1.21525 0.97298 0.98635 0.99706 1.17191 0.92912 0.93340 0.87362 0.96299 1.21161 1.31258 1.11822 0.91343 0.94548 1.25684 0.95233 0.95786 1.01570 1.69988 1.37337 1.23840 1.24223 0.85568 0.78482 0.78644 0.79019 1.19649 1.19965 1.20284 1.22508 0.95616 0.91156 0.96336 1.77338 1.22291 1.17129 0.98741 1.48372 1.39538 1.10652 1.17508 1.22080 1.04951 0.80908 0.96290 1.22558 0.98635 0.86957 1.00176 1.21427 1.10669 1.00671 0.98671 1.20510 0.96791 0.92409 0.98689 1.22435 0.97188 0.96638 0.97672 1.20848 0.96151 0.97004 0.92906 0.91361 0.95992 0.96049 0.92605 0.89800 0.86704 0.90153 0.90949 0.93118 0.90468 0.86931 0.88217 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.22 8.95 71.98 0.64 -5.58 16 2 C 0.11 6.42 2.72 -12.29 -0.03 6.38 16 3 H 0.02 1.14 8.12 -2.38 -0.02 1.12 16 4 C -0.52 -31.55 8.55 25.60 0.22 -31.33 16 5 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.91 -54.76 11.32 21.45 0.24 -54.51 16 8 Si 0.96 46.33 29.54 68.60 2.03 48.35 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 12 C 0.11 5.60 5.67 43.19 0.24 5.84 16 13 N -0.33 -16.52 12.57 -47.25 -0.59 -17.11 16 14 N -0.38 -14.25 4.02 -355.25 -1.43 -15.68 16 15 C 0.10 2.35 11.47 127.77 1.47 3.82 16 16 C 0.05 1.57 7.57 41.52 0.31 1.89 16 17 C -0.30 -12.81 6.81 -19.90 -0.14 -12.95 16 18 C -0.05 -1.48 6.80 30.64 0.21 -1.27 16 19 C -0.10 -2.12 7.14 31.67 0.23 -1.90 16 20 C -0.03 -0.63 6.78 30.54 0.21 -0.42 16 21 H 0.07 3.96 6.07 -2.39 -0.01 3.94 16 22 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -75.54 276.33 5.14 -70.40 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.08 Total: 2.68 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 3.81 Total: -34.12 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -1.78 Total: -87.31 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -75.54 5.14 -70.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993645.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.508 kcal (2) G-P(sol) polarization free energy of solvation -75.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds