Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48493 * 109.47232 * 240.00237 * 3 2 1 5 5 H 1.48504 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47103 * 120.00165 * 3 2 1 7 7 C 1.38621 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00301 * 179.97438 * 7 2 1 9 9 O 1.34804 * 120.00026 * 0.27283 * 7 2 1 10 10 C 1.35725 * 117.00192 * 174.66258 * 9 7 2 11 11 C 1.38435 * 120.24857 * 5.58298 * 10 9 7 12 12 C 1.38817 * 119.92276 * 180.02562 * 11 10 9 13 13 C 1.36098 * 121.23736 * 0.03012 * 12 11 10 14 14 C 1.41275 * 120.50341 * 359.97204 * 13 12 11 15 15 C 1.44981 * 130.54475 * 179.97438 * 14 13 12 16 16 N 1.28749 * 117.84162 * 179.97438 * 15 14 13 17 17 S 1.69393 * 108.95555 * 0.02562 * 16 15 14 18 18 C 1.39367 * 120.24565 * 185.31281 * 10 9 7 19 19 H 0.96999 * 120.00168 * 359.97438 * 1 2 3 20 20 H 1.08003 * 120.04210 * 359.97438 * 11 10 9 21 21 H 1.07997 * 119.37958 * 180.02562 * 12 11 10 22 22 H 1.08000 * 119.74492 * 179.97438 * 13 12 11 23 23 H 1.07997 * 121.07967 * 0.02705 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1036 1.6964 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3679 -0.0066 10 6 2.0700 -3.5033 -0.1193 11 6 3.4530 -3.4428 -0.1056 12 6 4.1982 -4.6082 -0.2219 13 6 3.5954 -5.8216 -0.3509 14 6 2.1865 -5.9240 -0.3691 15 6 1.3275 -7.0851 -0.4946 16 7 0.0541 -6.8954 -0.4811 17 16 -0.2535 -5.2384 -0.3104 18 6 1.4382 -4.7392 -0.2439 19 1 -0.4850 0.8400 0.0004 20 1 3.9516 -2.4900 -0.0055 21 1 5.2766 -4.5510 -0.2098 22 1 4.1987 -6.7129 -0.4400 23 1 1.7423 -8.0772 -0.5952 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260010641.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = 22.468927 kcal Electronic energy + Delta-G solvation = -12126.670977 eV Core-core repulsion = 9839.097213 eV Total energy + Delta-G solvation = -2287.573763 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.42200 -37.61050 -35.23050 -32.47264 -29.95213 -29.09189 -25.59350 -23.74346 -21.94129 -20.92964 -18.34795 -17.75878 -15.94200 -15.39835 -15.13188 -14.56580 -14.24028 -13.97662 -13.54768 -13.10806 -12.68504 -11.89353 -11.50435 -11.29021 -11.27270 -10.87500 -10.60182 -10.49696 -9.95587 -9.57458 -9.21414 -8.73993 -8.15231 -6.94026 -6.60549 -4.19519 1.08390 1.98312 2.07674 2.48230 2.73297 3.05156 3.07820 3.09915 3.82739 4.27730 4.74976 4.93922 5.02947 5.44848 5.64049 5.72913 5.94156 6.26643 6.40543 6.53471 6.78108 7.01030 7.11881 7.17881 7.47899 7.81183 8.82630 9.45839 10.55787 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.041262 B = 0.009044 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.431410 B = 3095.333118 C = 3760.533340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.043 3.957 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.097 0.903 9 O -0.164 6.164 10 C 0.185 3.815 11 C -0.225 4.225 12 C -0.064 4.064 13 C -0.157 4.157 14 C -0.097 4.097 15 C 0.114 3.886 16 N -0.458 5.458 17 S 0.197 5.803 18 C -0.182 4.182 19 H 0.274 0.726 20 H 0.137 0.863 21 H 0.117 0.883 22 H 0.117 0.883 23 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 -6.639 -0.544 9.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.114 0.886 9 O -0.066 6.066 10 C 0.126 3.874 11 C -0.250 4.250 12 C -0.084 4.084 13 C -0.181 4.181 14 C -0.109 4.109 15 C -0.096 4.096 16 N -0.270 5.270 17 S 0.350 5.650 18 C -0.303 4.303 19 H 0.084 0.916 20 H 0.155 0.845 21 H 0.135 0.865 22 H 0.135 0.865 23 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.334 -6.471 -0.542 7.300 hybrid contribution 2.357 0.727 0.006 2.466 sum 5.691 -5.744 -0.536 8.103 Atomic orbital electron populations 1.70042 1.06064 1.28309 1.44006 1.25371 0.95915 0.99040 0.96036 0.85715 0.78736 0.79280 0.79359 1.19284 1.20104 1.19282 1.21356 0.92015 0.80360 1.53290 0.88604 1.83968 1.34358 1.11434 1.76812 1.18058 0.89984 0.85669 0.93647 1.21115 0.92488 0.99455 1.11898 1.20342 0.99056 0.91893 0.97117 1.20024 0.90750 0.97726 1.09627 1.20098 0.95408 0.90142 1.05281 1.23732 0.88566 0.99383 0.97927 1.75670 1.18578 1.12403 1.20317 1.84947 1.06461 0.97886 1.75750 1.22461 0.98011 0.95511 1.14364 0.91562 0.84508 0.86509 0.86538 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.21 13.67 55.48 0.76 -23.45 14 2 C 0.04 1.13 5.49 -17.52 -0.10 1.03 14 3 Si 0.95 19.61 29.55 -169.99 -5.02 14.59 14 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 14 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 14 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 14 7 C -0.39 -10.57 9.49 30.87 0.29 -10.28 14 8 H 0.10 2.32 5.22 -52.49 -0.27 2.05 14 9 O -0.16 -4.55 9.76 0.20 0.00 -4.55 14 10 C 0.19 4.42 6.65 -39.09 -0.26 4.16 14 11 C -0.22 -4.61 9.19 -39.29 -0.36 -4.98 14 12 C -0.06 -1.08 9.91 -40.14 -0.40 -1.48 14 13 C -0.16 -2.56 10.05 -39.20 -0.39 -2.95 14 14 C -0.10 -1.81 6.12 -105.15 -0.64 -2.45 14 15 C 0.11 1.88 11.46 -16.18 -0.19 1.69 14 16 N -0.46 -8.55 11.90 30.96 0.37 -8.18 14 17 S 0.20 4.14 23.86 -107.50 -2.56 1.58 14 18 C -0.18 -4.03 6.66 -38.24 -0.25 -4.28 14 19 H 0.27 7.15 8.31 -40.82 -0.34 6.81 14 20 H 0.14 2.72 5.65 -52.48 -0.30 2.42 14 21 H 0.12 1.55 8.06 -52.49 -0.42 1.13 14 22 H 0.12 1.46 8.06 -52.49 -0.42 1.04 14 23 H 0.18 2.08 8.06 -52.49 -0.42 1.66 14 LS Contribution 228.44 15.07 3.44 3.44 Total: -1.00 -29.88 228.44 -6.29 -36.17 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -0.97 Total: -0.05 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -2.30 Total: -19.54 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 1.13 Total: -31.63 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: 0.00 Total: -4.55 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -2.56 Total: 1.58 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.88 -6.29 -36.17 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010641.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.638 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds