Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48493 * 109.47232 * 240.00237 * 3 2 1 5 5 H 1.48504 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47103 * 120.00165 * 3 2 1 7 7 C 1.38621 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00301 * 179.97438 * 7 2 1 9 9 O 1.34804 * 120.00026 * 0.27283 * 7 2 1 10 10 C 1.35725 * 117.00192 * 174.66258 * 9 7 2 11 11 C 1.38435 * 120.24857 * 5.58298 * 10 9 7 12 12 C 1.38817 * 119.92276 * 180.02562 * 11 10 9 13 13 C 1.36098 * 121.23736 * 0.03012 * 12 11 10 14 14 C 1.41275 * 120.50341 * 359.97204 * 13 12 11 15 15 C 1.44981 * 130.54475 * 179.97438 * 14 13 12 16 16 N 1.28749 * 117.84162 * 179.97438 * 15 14 13 17 17 S 1.69393 * 108.95555 * 0.02562 * 16 15 14 18 18 C 1.39367 * 120.24565 * 185.31281 * 10 9 7 19 19 H 0.96999 * 120.00168 * 359.97438 * 1 2 3 20 20 H 1.08003 * 120.04210 * 359.97438 * 11 10 9 21 21 H 1.07997 * 119.37958 * 180.02562 * 12 11 10 22 22 H 1.08000 * 119.74492 * 179.97438 * 13 12 11 23 23 H 1.07997 * 121.07967 * 0.02705 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1036 1.6964 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3679 -0.0066 10 6 2.0700 -3.5033 -0.1193 11 6 3.4530 -3.4428 -0.1056 12 6 4.1982 -4.6082 -0.2219 13 6 3.5954 -5.8216 -0.3509 14 6 2.1865 -5.9240 -0.3691 15 6 1.3275 -7.0851 -0.4946 16 7 0.0541 -6.8954 -0.4811 17 16 -0.2535 -5.2384 -0.3104 18 6 1.4382 -4.7392 -0.2439 19 1 -0.4850 0.8400 0.0004 20 1 3.9516 -2.4900 -0.0055 21 1 5.2766 -4.5510 -0.2098 22 1 4.1987 -6.7129 -0.4400 23 1 1.7423 -8.0772 -0.5952 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260010641.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = 2.485519 kcal Electronic energy + Delta-G solvation = -12127.537522 eV Core-core repulsion = 9839.097213 eV Total energy + Delta-G solvation = -2288.440309 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.03454 -39.24623 -36.75650 -34.34934 -31.48495 -30.69112 -27.46857 -25.24804 -23.51232 -22.42519 -20.04705 -19.49391 -17.58356 -16.95170 -16.73840 -16.20063 -15.93964 -15.40972 -15.11664 -14.72433 -14.28019 -13.61441 -13.09388 -12.87787 -12.79051 -12.40401 -12.19036 -12.01676 -11.52809 -11.26464 -10.92993 -10.45318 -9.71889 -8.59348 -8.50430 -6.20104 -0.40140 0.47466 0.51339 0.99561 1.27977 1.35891 1.49002 1.52774 2.14934 2.72154 3.04848 3.23380 3.54733 4.06844 4.16493 4.46242 4.46761 4.75419 4.92185 5.02242 5.14991 5.44893 5.58682 5.66524 5.92769 6.01521 6.92084 7.66336 8.71367 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.041262 B = 0.009044 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.431410 B = 3095.333118 C = 3760.533340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 1.022 2.978 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.417 4.417 8 H 0.112 0.888 9 O -0.223 6.223 10 C 0.143 3.857 11 C -0.218 4.218 12 C -0.066 4.066 13 C -0.114 4.114 14 C -0.107 4.107 15 C 0.142 3.858 16 N -0.462 5.462 17 S 0.122 5.878 18 C -0.211 4.211 19 H 0.274 0.726 20 H 0.137 0.863 21 H 0.168 0.832 22 H 0.177 0.823 23 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.086 -9.163 -0.841 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.219 4.219 3 Si 0.841 3.159 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.493 4.493 8 H 0.129 0.871 9 O -0.129 6.129 10 C 0.088 3.912 11 C -0.242 4.242 12 C -0.085 4.085 13 C -0.137 4.137 14 C -0.119 4.119 15 C -0.069 4.069 16 N -0.272 5.272 17 S 0.274 5.726 18 C -0.332 4.332 19 H 0.083 0.917 20 H 0.155 0.845 21 H 0.185 0.815 22 H 0.195 0.805 23 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 7.255 -9.061 -0.842 11.638 hybrid contribution 1.407 1.045 0.068 1.754 sum 8.662 -8.016 -0.775 11.827 Atomic orbital electron populations 1.70209 1.08250 1.29105 1.47840 1.26684 0.96815 1.02964 0.95461 0.84599 0.77344 0.73812 0.80173 1.17849 1.20003 1.17775 1.21897 0.92903 0.80876 1.53602 0.87090 1.83959 1.35955 1.12548 1.80400 1.18674 0.91623 0.85494 0.95434 1.21475 0.91412 1.01430 1.09892 1.20911 1.01404 0.90519 0.95711 1.20801 0.89798 0.99633 1.03517 1.20686 0.96740 0.89409 1.05047 1.24598 0.87450 1.00984 0.93846 1.75888 1.20044 1.09344 1.21894 1.85148 1.08348 1.00978 1.78167 1.22775 0.98330 0.96431 1.15639 0.91715 0.84513 0.81469 0.80526 0.74190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.00 13.67 21.61 0.30 -55.70 14 2 C -0.02 -1.16 5.49 84.82 0.47 -0.69 14 3 Si 1.02 41.45 29.55 68.60 2.03 43.47 14 4 H -0.25 -9.58 7.11 99.48 0.71 -8.88 14 5 H -0.28 -10.91 7.11 99.48 0.71 -10.21 14 6 H -0.25 -9.53 7.11 99.48 0.71 -8.83 14 7 C -0.42 -23.51 9.49 67.91 0.64 -22.87 14 8 H 0.11 5.53 5.22 -2.91 -0.02 5.51 14 9 O -0.22 -13.24 9.76 -22.19 -0.22 -13.46 14 10 C 0.14 7.00 6.65 22.59 0.15 7.15 14 11 C -0.22 -8.62 9.19 22.46 0.21 -8.42 14 12 C -0.07 -1.87 9.91 21.91 0.22 -1.65 14 13 C -0.11 -2.95 10.05 22.52 0.23 -2.72 14 14 C -0.11 -3.56 6.12 -20.21 -0.12 -3.68 14 15 C 0.14 4.02 11.46 86.87 1.00 5.01 14 16 N -0.46 -16.50 11.90 -55.96 -0.67 -17.17 14 17 S 0.12 5.36 23.86 -56.49 -1.35 4.01 14 18 C -0.21 -9.40 6.66 23.14 0.15 -9.24 14 19 H 0.27 15.37 8.31 -92.71 -0.77 14.60 14 20 H 0.14 5.31 5.65 -2.91 -0.02 5.30 14 21 H 0.17 3.17 8.06 -2.91 -0.02 3.15 14 22 H 0.18 2.63 8.06 -2.91 -0.02 2.60 14 23 H 0.24 3.74 8.06 -2.91 -0.02 3.71 14 Total: -1.00 -73.28 228.44 4.28 -69.01 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.25 Total: 6.96 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 2.94 Total: -37.12 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -0.37 Total: -72.87 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.22 Total: -13.46 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.35 Total: 4.01 kcal Total: -73.28 4.28 -69.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010641.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.491 kcal (2) G-P(sol) polarization free energy of solvation -73.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds