Wall clock time and date at job start Mon Mar 30 2020 03:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35044 * 126.39523 * 2 1 4 4 C 1.50692 * 125.65329 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47259 * 270.02722 * 4 3 2 6 6 C 1.50701 * 109.47637 * 180.02562 * 5 4 3 7 7 H 1.08006 * 119.99635 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00514 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99627 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00338 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47222 * 89.99829 * 10 8 6 12 12 H 1.48497 * 109.47378 * 209.99999 * 10 8 6 13 13 H 1.48506 * 109.47095 * 329.99636 * 10 8 6 14 14 N 1.30501 * 108.69892 * 179.97438 * 3 2 1 15 15 C 1.34134 * 109.25535 * 359.97438 * 14 3 2 16 16 C 1.34668 * 108.01972 * 0.02562 * 15 14 3 17 17 C 1.50694 * 126.58896 * 180.02562 * 16 15 14 18 18 C 1.53011 * 117.49883 * 33.72559 * 17 16 15 19 19 C 1.53004 * 117.50360 * 325.06496 * 17 16 15 20 20 H 1.09001 * 109.47253 * 269.99983 * 1 2 3 21 21 H 1.08997 * 109.46870 * 30.00133 * 1 2 3 22 22 H 1.09004 * 109.46937 * 150.00289 * 1 2 3 23 23 H 1.09003 * 109.47503 * 30.02446 * 4 3 2 24 24 H 1.09002 * 109.47423 * 150.02551 * 4 3 2 25 25 H 1.09002 * 109.46833 * 299.99739 * 5 4 3 26 26 H 1.09002 * 109.47043 * 59.99596 * 5 4 3 27 27 H 0.96997 * 119.99527 * 179.97438 * 9 8 6 28 28 H 1.08001 * 125.98356 * 179.97438 * 15 14 3 29 29 H 1.08998 * 115.55098 * 179.38749 * 17 16 15 30 30 H 1.08995 * 117.49687 * 359.97438 * 18 17 16 31 31 H 1.09001 * 117.49711 * 145.01822 * 18 17 16 32 32 H 1.08997 * 117.50014 * 214.97991 * 19 17 16 33 33 H 1.08999 * 117.49242 * 359.96979 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 6 1.8018 2.5206 -0.0005 5 6 1.6445 3.0052 -1.4432 6 6 1.1806 4.4390 -1.4439 7 1 1.0142 4.9531 -0.5087 8 6 0.9676 5.0942 -2.6381 9 7 1.1698 4.4680 -3.7768 10 14 0.3920 6.8713 -2.6388 11 1 1.5713 7.7736 -2.6398 12 1 -0.4271 7.1258 -3.8511 13 1 -0.4261 7.1271 -1.4261 14 7 3.5095 0.6903 0.0006 15 6 3.5460 -0.6505 0.0015 16 6 2.2772 -1.1018 0.0009 17 6 1.8364 -2.5428 0.0022 18 6 2.7085 -3.5478 0.7575 19 6 2.6942 -3.5448 -0.7732 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 0.8432 2.5922 0.5133 24 1 2.5365 3.1408 0.5130 25 1 2.6031 2.9337 -1.9571 26 1 0.9098 2.3850 -1.9567 27 1 1.0196 4.9289 -4.6170 28 1 4.4369 -1.2611 0.0017 29 1 0.7585 -2.7047 0.0120 30 1 3.6013 -3.1666 1.2532 31 1 2.2044 -4.3710 1.2638 32 1 2.1807 -4.3660 -1.2732 33 1 3.5772 -3.1615 -1.2846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260010870.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:06 Heat of formation + Delta-G solvation = 49.150771 kcal Electronic energy + Delta-G solvation = -14434.317851 eV Core-core repulsion = 12074.533079 eV Total energy + Delta-G solvation = -2359.784772 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.11313 -38.03296 -35.91734 -34.92728 -33.51845 -29.88924 -27.96864 -26.91257 -24.27557 -23.43203 -23.19814 -20.84740 -20.37296 -18.59412 -17.88898 -16.75758 -16.38327 -16.23186 -15.51658 -14.93231 -14.75298 -14.46147 -14.08900 -13.83465 -13.57779 -13.16901 -12.85019 -12.77663 -12.48556 -12.35580 -11.94099 -11.92568 -11.52883 -11.39916 -11.28746 -10.86862 -10.57919 -10.45424 -8.95595 -8.20448 -6.33621 1.01450 1.42107 1.44321 1.55091 1.89045 2.13401 2.42235 3.10643 3.12963 3.57061 3.68874 3.86011 4.02289 4.16448 4.18707 4.23283 4.36966 4.50027 4.62561 4.70610 4.75241 4.82257 4.96650 5.03922 5.15756 5.29878 5.44433 5.51210 5.59412 5.78582 5.87031 6.15484 6.29679 6.82718 7.21385 7.36464 8.91564 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.057583 B = 0.005563 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.136539 B = 5032.389156 C = 5062.814849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.455 5.455 3 C 0.202 3.798 4 C -0.017 4.017 5 C 0.045 3.955 6 C -0.542 4.542 7 H 0.070 0.930 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.970 3.030 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.257 1.257 14 N -0.534 5.534 15 C -0.058 4.058 16 C 0.005 3.995 17 C -0.102 4.102 18 C -0.149 4.149 19 C -0.162 4.162 20 H 0.099 0.901 21 H 0.080 0.920 22 H 0.106 0.894 23 H 0.087 0.913 24 H 0.076 0.924 25 H -0.021 1.021 26 H -0.008 1.008 27 H 0.264 0.736 28 H 0.178 0.822 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 -15.292 8.799 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.136 5.136 3 C -0.060 4.060 4 C -0.056 4.056 5 C 0.006 3.994 6 C -0.580 4.580 7 H 0.088 0.912 8 C -0.198 4.198 9 N -0.576 5.576 10 Si 0.794 3.206 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.181 1.181 14 N -0.253 5.253 15 C -0.205 4.205 16 C -0.110 4.110 17 C -0.121 4.121 18 C -0.187 4.187 19 C -0.199 4.199 20 H 0.118 0.882 21 H 0.099 0.901 22 H 0.124 0.876 23 H 0.105 0.895 24 H 0.095 0.905 25 H -0.002 1.002 26 H 0.011 0.989 27 H 0.072 0.928 28 H 0.196 0.804 29 H 0.143 0.857 30 H 0.112 0.888 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.409 -14.753 8.633 17.262 hybrid contribution -0.624 0.553 -0.573 1.011 sum -3.033 -14.200 8.060 16.608 Atomic orbital electron populations 1.22305 0.74905 1.05533 1.05029 1.45284 1.08748 1.05574 1.54020 1.23561 0.85830 0.91823 1.04813 1.20012 1.00990 0.85176 0.99411 1.18816 0.94432 0.95329 0.90779 1.21630 1.45239 0.97912 0.93173 0.91202 1.26025 0.95422 1.03266 0.95040 1.70134 1.50173 1.39121 0.98124 0.85369 0.78421 0.78675 0.78106 1.20071 1.20795 1.18057 1.70165 1.20114 1.13296 1.21750 1.22271 0.96977 0.90584 1.10703 1.20779 0.90494 0.89324 1.10419 1.20276 0.98899 0.83485 1.09435 1.23154 1.01214 0.99864 0.94421 1.23161 1.01543 1.00248 0.94958 0.88231 0.90085 0.87562 0.89504 0.90520 1.00232 0.98947 0.92763 0.80442 0.85668 0.88799 0.85875 0.86194 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.61 10.56 127.77 1.35 2.96 16 2 N -0.45 -15.71 3.15 -523.07 -1.65 -17.36 16 3 C 0.20 8.60 7.16 138.12 0.99 9.59 16 4 C -0.02 -0.74 5.25 29.85 0.16 -0.59 16 5 C 0.04 2.46 4.95 29.85 0.15 2.60 16 6 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 7 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 8 C 0.00 0.01 5.46 84.65 0.46 0.48 16 9 N -0.94 -57.97 13.29 21.45 0.28 -57.69 16 10 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 14 N -0.53 -23.85 11.25 -188.13 -2.12 -25.96 16 15 C -0.06 -2.10 10.94 83.52 0.91 -1.18 16 16 C 0.01 0.16 6.63 40.95 0.27 0.43 16 17 C -0.10 -2.15 6.02 -11.54 -0.07 -2.22 16 18 C -0.15 -2.39 10.06 30.62 0.31 -2.08 16 19 C -0.16 -2.82 10.06 30.62 0.31 -2.51 16 20 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.08 2.33 7.66 -2.39 -0.02 2.31 16 22 H 0.11 2.08 7.38 -2.38 -0.02 2.06 16 23 H 0.09 3.37 7.70 -2.39 -0.02 3.35 16 24 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 25 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 28 H 0.18 5.37 8.06 -2.91 -0.02 5.35 16 29 H 0.13 2.17 7.40 -2.39 -0.02 2.16 16 30 H 0.09 1.63 7.95 -2.39 -0.02 1.61 16 31 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.77 7.98 -2.39 -0.02 1.75 16 Total: -1.00 -73.09 283.76 4.69 -68.39 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.08 Total: 9.64 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 5.07 Total: -23.19 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -3.48 Total: -101.01 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -73.09 4.69 -68.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010870.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.545 kcal (2) G-P(sol) polarization free energy of solvation -73.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds