Wall clock time and date at job start Mon Mar 30 2020 03:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36941 * 120.00160 * 2 1 4 4 H 1.08000 * 120.00416 * 204.74542 * 3 2 1 5 5 C 1.38811 * 120.00002 * 24.73459 * 3 2 1 6 6 N 1.31620 * 119.99804 * 12.45632 * 5 3 2 7 7 Si 1.86801 * 120.00162 * 192.45789 * 5 3 2 8 8 H 1.48502 * 109.46995 * 60.00113 * 7 5 3 9 9 H 1.48499 * 109.47099 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46915 * 299.99878 * 7 5 3 11 11 C 1.46504 * 120.00518 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.86223 * 183.73435 * 11 2 1 13 13 C 1.54719 * 110.94836 * 307.60574 * 11 2 1 14 14 C 1.51290 * 104.98403 * 92.47960 * 13 11 2 15 15 C 1.41108 * 142.07312 * 196.91858 * 14 13 11 16 16 C 1.34774 * 107.41166 * 179.97438 * 15 14 13 17 17 N 1.36233 * 108.22485 * 0.02562 * 16 15 14 18 18 C 1.46505 * 125.60834 * 180.02562 * 17 16 15 19 19 C 1.34650 * 110.43337 * 16.86395 * 14 13 11 20 20 C 1.51414 * 110.27067 * 0.04054 * 19 14 13 21 21 H 1.08997 * 109.47426 * 265.41049 * 1 2 3 22 22 H 1.08995 * 109.47348 * 25.41414 * 1 2 3 23 23 H 1.09004 * 109.46873 * 145.40816 * 1 2 3 24 24 H 0.97002 * 119.99722 * 180.02562 * 6 5 3 25 25 H 1.09000 * 110.34780 * 333.59172 * 13 11 2 26 26 H 1.09000 * 110.40006 * 211.39517 * 13 11 2 27 27 H 1.07998 * 126.29769 * 359.94096 * 15 14 13 28 28 H 1.07997 * 125.88525 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.46794 * 269.97374 * 18 17 16 30 30 H 1.08998 * 109.46828 * 29.96951 * 18 17 16 31 31 H 1.08998 * 109.46974 * 149.97272 * 18 17 16 32 32 H 1.09004 * 110.33637 * 101.96328 * 20 19 14 33 33 H 1.08998 * 110.33382 * 224.09673 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1553 1.2289 -0.3915 5 6 1.5512 2.3329 0.5030 6 7 0.4368 2.2432 1.1976 7 14 2.3272 4.0038 0.1940 8 1 2.4042 4.2510 -1.2683 9 1 1.4996 5.0594 0.8311 10 1 3.6945 4.0291 0.7730 11 6 2.1976 -1.2687 0.0006 12 1 3.2718 -1.0966 0.0668 13 6 1.7106 -2.1881 1.1457 14 6 0.6273 -3.0437 0.5266 15 6 -0.4539 -3.8859 0.8624 16 6 -0.9969 -4.3243 -0.2905 17 7 -0.2926 -3.7860 -1.3250 18 6 -0.5599 -4.0114 -2.7477 19 6 0.7034 -2.9991 -0.8170 20 6 1.8490 -2.1078 -1.2482 21 1 -0.3634 -0.0822 1.0243 22 1 -0.3634 0.9282 -0.4410 23 1 -0.3633 -0.8460 -0.5835 24 1 0.0183 3.0448 1.5488 25 1 1.3028 -1.5927 1.9625 26 1 2.5282 -2.8132 1.5048 27 1 -0.7852 -4.1340 1.8600 28 1 -1.8438 -4.9886 -0.3791 29 1 0.0070 -4.8768 -3.0912 30 1 -1.6247 -4.1936 -2.8929 31 1 -0.2607 -3.1316 -3.3174 32 1 2.7052 -2.7109 -1.5505 33 1 1.5365 -1.4583 -2.0659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260050653.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:03 Heat of formation + Delta-G solvation = 71.077572 kcal Electronic energy + Delta-G solvation = -15236.741042 eV Core-core repulsion = 12877.907087 eV Total energy + Delta-G solvation = -2358.833954 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.34975 -38.41247 -35.41318 -33.30200 -32.04811 -28.95982 -28.25206 -27.48792 -26.42909 -24.45378 -21.17218 -20.55126 -19.53307 -18.81064 -17.43158 -17.03069 -16.23986 -15.58461 -15.21622 -14.90893 -14.43161 -14.10608 -13.80458 -13.49755 -13.20659 -13.03012 -12.92003 -12.78208 -12.52722 -12.33318 -12.12630 -12.01956 -11.95232 -11.75920 -11.70682 -10.57994 -9.23821 -8.74522 -8.58802 -7.81047 -5.30021 1.44537 1.48261 1.51379 1.57785 2.08635 2.18043 2.53076 3.32340 3.67715 3.78966 4.03837 4.08152 4.31772 4.47264 4.55176 4.61332 4.71102 4.77210 4.86269 4.94379 4.99193 5.04774 5.22219 5.36290 5.38579 5.47769 5.66202 5.69305 5.70634 6.19898 6.37286 6.49662 6.70790 7.17344 7.89690 8.38554 9.23732 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.007809 C = 0.007668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.847378 B = 3584.672402 C = 3650.669225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.199 3.801 2 N -0.599 5.599 3 C -0.268 4.268 4 H 0.078 0.922 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.974 3.026 8 H -0.277 1.277 9 H -0.297 1.297 10 H -0.272 1.272 11 C 0.173 3.827 12 H 0.087 0.913 13 C -0.064 4.064 14 C -0.203 4.203 15 C -0.213 4.213 16 C -0.008 4.008 17 N -0.442 5.442 18 C 0.069 3.931 19 C -0.022 4.022 20 C -0.043 4.043 21 H -0.018 1.018 22 H 0.019 0.981 23 H 0.016 0.984 24 H 0.247 0.753 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.134 0.866 28 H 0.199 0.801 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 -13.137 -7.217 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.320 5.320 3 C -0.398 4.398 4 H 0.096 0.904 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.801 3.199 8 H -0.203 1.203 9 H -0.224 1.224 10 H -0.198 1.198 11 C 0.065 3.935 12 H 0.105 0.895 13 C -0.104 4.104 14 C -0.210 4.210 15 C -0.238 4.238 16 C -0.137 4.137 17 N -0.118 5.118 18 C -0.072 4.072 19 C -0.134 4.134 20 C -0.083 4.083 21 H 0.000 1.000 22 H 0.038 0.962 23 H 0.035 0.965 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.151 0.849 28 H 0.216 0.784 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.903 -13.061 -7.541 15.109 hybrid contribution -0.080 1.106 0.401 1.180 sum -0.983 -11.955 -7.140 13.960 Atomic orbital electron populations 1.20206 0.83328 0.95657 0.95436 1.44090 1.01679 1.01151 1.85106 1.19652 0.99863 0.86863 1.33415 0.90422 1.25908 0.98789 1.02337 0.98011 1.70273 1.21919 1.27984 1.38594 0.85251 0.77744 0.79092 0.77791 1.20280 1.22351 1.19768 1.21314 0.95641 0.84606 0.91947 0.89541 1.21069 0.95545 0.95492 0.98248 1.20550 1.00956 1.04269 0.95178 1.20574 0.99716 1.04885 0.98585 1.22094 1.01390 1.05101 0.85084 1.43644 1.23912 1.36789 1.07426 1.22225 1.04272 1.03361 0.77320 1.21116 0.96642 1.01285 0.94317 1.21175 0.93227 0.94751 0.99180 1.00009 0.96201 0.96539 0.94374 0.94918 0.90399 0.84856 0.78421 0.89456 0.87869 0.90488 0.88673 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.84 7.84 127.77 1.00 11.84 16 2 N -0.60 -31.50 2.88 -696.80 -2.01 -33.51 16 3 C -0.27 -15.05 9.59 84.03 0.81 -14.24 16 4 H 0.08 4.11 7.86 -2.91 -0.02 4.09 16 5 C -0.06 -3.20 5.04 84.86 0.43 -2.78 16 6 N -0.94 -58.18 10.85 21.65 0.23 -57.95 16 7 Si 0.97 45.80 29.57 68.60 2.03 47.83 16 8 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 9 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 C 0.17 7.40 3.72 46.07 0.17 7.57 16 12 H 0.09 3.49 7.96 -2.39 -0.02 3.47 16 13 C -0.06 -2.65 6.05 30.62 0.19 -2.47 16 14 C -0.20 -7.99 6.12 -19.80 -0.12 -8.11 16 15 C -0.21 -7.34 10.87 22.18 0.24 -7.10 16 16 C -0.01 -0.21 11.43 83.21 0.95 0.74 16 17 N -0.44 -12.92 3.15 -532.39 -1.68 -14.59 16 18 C 0.07 1.30 11.12 127.77 1.42 2.72 16 19 C -0.02 -0.78 6.00 41.20 0.25 -0.53 16 20 C -0.04 -1.54 6.05 30.56 0.18 -1.36 16 21 H -0.02 -1.12 7.84 -2.39 -0.02 -1.14 16 22 H 0.02 1.14 6.79 -2.39 -0.02 1.13 16 23 H 0.02 0.82 5.77 -2.38 -0.01 0.81 16 24 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.03 1.58 8.05 -2.39 -0.02 1.56 16 26 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 28 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 33 H 0.06 2.17 8.09 -2.39 -0.02 2.15 16 Total: -1.00 -70.10 269.07 5.17 -64.93 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.08 Total: 7.01 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 5.52 Total: -13.71 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -3.45 Total: -106.05 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -70.10 5.17 -64.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050653.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.008 kcal (2) G-P(sol) polarization free energy of solvation -70.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds