Wall clock time and date at job start Mon Mar 30 2020 02:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.74719 * 2 1 4 4 C 1.53397 * 109.72175 * 239.37031 * 2 1 3 5 5 C 1.53152 * 109.23492 * 191.47552 * 4 2 1 6 6 C 1.53252 * 109.50531 * 69.48408 * 5 4 2 7 7 N 1.46474 * 108.80101 * 309.65682 * 6 5 4 8 8 C 1.36315 * 127.77649 * 197.12082 * 7 6 5 9 9 C 1.50696 * 126.65478 * 359.90311 * 8 7 6 10 10 C 1.50706 * 109.47259 * 265.00011 * 9 8 7 11 11 H 1.08005 * 119.99758 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00102 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 C 1.34850 * 106.68503 * 180.16590 * 8 7 6 19 19 N 1.34287 * 108.07724 * 359.62454 * 18 8 7 20 20 C 1.30089 * 109.20844 * 0.41859 * 19 18 8 21 21 H 1.08997 * 109.47802 * 299.38043 * 1 2 3 22 22 H 1.09010 * 109.47107 * 59.37815 * 1 2 3 23 23 H 1.09003 * 109.47276 * 179.37207 * 1 2 3 24 24 H 1.08995 * 109.50809 * 311.39774 * 4 2 1 25 25 H 1.09001 * 109.51161 * 71.54278 * 4 2 1 26 26 H 1.09002 * 109.46410 * 189.50128 * 5 4 2 27 27 H 1.09003 * 109.46372 * 309.47765 * 5 4 2 28 28 H 1.09009 * 109.58084 * 189.86555 * 6 5 4 29 29 H 1.09001 * 109.58310 * 69.45255 * 6 5 4 30 30 H 1.09001 * 109.47545 * 145.00351 * 9 8 7 31 31 H 1.09006 * 109.47511 * 25.00016 * 9 8 7 32 32 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 33 33 H 1.08004 * 125.95731 * 179.74402 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0476 -0.7357 -1.2425 5 6 3.5518 -0.9816 -1.0931 6 6 3.7936 -2.0221 0.0057 7 7 3.0508 -1.6246 1.2039 8 6 3.2280 -2.0666 2.4812 9 6 4.2411 -3.0787 2.9505 10 6 3.6048 -4.4442 2.9924 11 1 2.5703 -4.5669 2.7072 12 6 4.3432 -5.5368 3.3948 13 7 5.6027 -5.3873 3.7425 14 14 3.5542 -7.2292 3.4473 15 1 2.9537 -7.4541 4.7868 16 1 2.4954 -7.3141 2.4096 17 1 4.5864 -8.2648 3.1874 18 6 2.3170 -1.4267 3.2422 19 7 1.6093 -0.6092 2.4459 20 6 2.0394 -0.7243 1.2236 21 1 -0.3634 0.5041 0.8954 22 1 -0.3634 0.5235 -0.8844 23 1 -0.3634 -1.0276 -0.0113 24 1 1.5309 -1.6902 -1.3420 25 1 1.8642 -0.1276 -2.1284 26 1 3.9552 -1.3491 -2.0367 27 1 4.0475 -0.0485 -0.8252 28 1 4.8582 -2.0706 0.2351 29 1 3.4459 -2.9982 -0.3326 30 1 4.5888 -2.8092 3.9478 31 1 5.0864 -3.0927 2.2625 32 1 6.0123 -4.5084 3.7156 33 1 2.1817 -1.5490 4.3067 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062679.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:16 Heat of formation + Delta-G solvation = 29.075612 kcal Electronic energy + Delta-G solvation = -15033.559660 eV Core-core repulsion = 12672.904364 eV Total energy + Delta-G solvation = -2360.655296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.67373 -36.64777 -34.17985 -33.30997 -30.19537 -29.83669 -26.47137 -26.06760 -23.16202 -22.33392 -21.67726 -19.77500 -18.43654 -16.92717 -15.99915 -15.30885 -14.60149 -14.28829 -13.95124 -13.78403 -13.32617 -13.11654 -12.60324 -12.36808 -11.98552 -11.71524 -11.55204 -11.28163 -11.11078 -10.88429 -10.76193 -10.63803 -10.40101 -10.13967 -9.19904 -9.04538 -8.72703 -8.43630 -7.31452 -6.43497 -4.16715 2.84555 3.40514 3.41491 3.43384 3.59253 3.86994 4.49086 4.57881 4.66975 4.75335 4.82879 5.30186 5.35094 5.39365 5.51463 5.62744 5.67188 5.73751 5.78606 5.83528 5.96421 6.03888 6.23282 6.30226 6.39583 6.51783 6.84813 7.03794 7.47216 7.57997 7.90280 8.05397 8.37129 8.76023 8.84220 9.53674 10.93708 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.036763 B = 0.007801 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.449030 B = 3588.337848 C = 3727.405609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.004 3.996 3 H 0.084 0.916 4 C -0.121 4.121 5 C -0.132 4.132 6 C 0.108 3.892 7 N -0.453 5.453 8 C 0.047 3.953 9 C 0.073 3.927 10 C -0.592 4.592 11 H 0.051 0.949 12 C 0.018 3.982 13 N -0.910 5.910 14 Si 1.073 2.927 15 H -0.285 1.285 16 H -0.289 1.289 17 H -0.283 1.283 18 C -0.063 4.063 19 N -0.487 5.487 20 C 0.170 3.830 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.014 0.986 32 H 0.268 0.732 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 8.515 -10.637 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.016 4.016 3 H 0.102 0.898 4 C -0.159 4.159 5 C -0.170 4.170 6 C -0.015 4.015 7 N -0.137 5.137 8 C -0.069 4.069 9 C 0.035 3.965 10 C -0.631 4.631 11 H 0.069 0.931 12 C -0.186 4.186 13 N -0.546 5.546 14 Si 0.901 3.099 15 H -0.212 1.212 16 H -0.215 1.215 17 H -0.209 1.209 18 C -0.209 4.209 19 N -0.206 5.206 20 C -0.091 4.091 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.139 7.389 -10.130 13.550 hybrid contribution 0.431 0.952 -0.474 1.147 sum -4.707 8.341 -10.604 14.289 Atomic orbital electron populations 1.21677 0.93293 1.02273 1.01964 1.19605 0.96336 0.97639 0.88057 0.89760 1.21764 0.95272 1.01345 0.97505 1.21887 0.97275 0.99386 0.98467 1.21796 0.97290 0.98796 0.83600 1.45114 1.27940 1.33056 1.07629 1.21877 1.02475 0.99880 0.82647 1.17934 0.91158 0.91486 0.95936 1.21912 0.99426 0.91974 1.49761 0.93102 1.25878 0.95380 1.03910 0.93385 1.70777 1.12174 1.26914 1.44741 0.83479 0.75016 0.74735 0.76682 1.21195 1.21529 1.20903 1.21892 0.98411 1.01040 0.99547 1.69828 1.27263 1.23388 1.00090 1.22845 0.93139 0.97842 0.95256 0.91363 0.92522 0.92660 0.91160 0.90571 0.89709 0.91053 0.89595 0.89914 0.94868 0.96795 0.92109 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.10 37.15 0.34 -1.36 16 2 C 0.00 0.05 3.12 -91.40 -0.29 -0.23 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 4 C -0.12 -1.39 5.28 -26.45 -0.14 -1.53 16 5 C -0.13 -1.56 5.94 -26.52 -0.16 -1.71 16 6 C 0.11 1.75 6.67 -3.93 -0.03 1.73 16 7 N -0.45 -9.17 3.13 -109.19 -0.34 -9.51 16 8 C 0.05 1.10 6.17 -81.80 -0.50 0.60 16 9 C 0.07 1.88 4.65 -29.03 -0.14 1.75 16 10 C -0.59 -16.83 9.09 -34.44 -0.31 -17.14 16 11 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 12 C 0.02 0.52 5.46 -17.82 -0.10 0.43 16 13 N -0.91 -27.23 13.65 55.43 0.76 -26.48 16 14 Si 1.07 25.26 29.90 -169.99 -5.08 20.18 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 C -0.06 -1.46 11.80 -17.68 -0.21 -1.67 16 19 N -0.49 -10.59 11.12 -10.62 -0.12 -10.71 16 20 C 0.17 3.27 7.00 -155.24 -1.09 2.18 16 21 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 28 H 0.09 1.39 7.75 -51.92 -0.40 0.99 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.03 0.89 8.01 -51.93 -0.42 0.47 16 31 H 0.01 0.36 7.45 -51.93 -0.39 -0.02 16 32 H 0.27 7.96 7.22 -40.82 -0.29 7.66 16 33 H 0.16 3.50 8.06 -52.48 -0.42 3.08 16 LS Contribution 272.83 15.07 4.11 4.11 Total: -1.00 -32.30 272.83 -8.22 -40.52 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.92 Total: -1.15 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -2.61 Total: -16.96 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.30 Total: -46.69 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.30 -8.22 -40.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062679.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.594 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds