Wall clock time and date at job start Mon Mar 30 2020 03:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47074 * 2 1 4 4 C 1.50699 * 109.47214 * 239.99532 * 2 1 3 5 5 H 1.07994 * 119.99535 * 266.66563 * 4 2 1 6 6 C 1.37872 * 119.99758 * 86.66823 * 4 2 1 7 7 N 1.31517 * 120.00184 * 353.11894 * 6 4 2 8 8 Si 1.86802 * 119.99756 * 173.12343 * 6 4 2 9 9 H 1.48499 * 109.47272 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.47099 * 299.99579 * 8 6 4 11 11 H 1.48497 * 109.47526 * 59.99657 * 8 6 4 12 12 C 1.50697 * 109.46800 * 119.99463 * 2 1 3 13 13 C 1.39870 * 125.90240 * 35.00162 * 12 2 1 14 14 C 1.35314 * 107.92431 * 179.97438 * 13 12 2 15 15 C 1.50694 * 126.12899 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.49726 * 33.60290 * 15 14 13 17 17 C 1.52997 * 60.00178 * 252.50693 * 16 15 14 18 18 N 1.34952 * 107.74599 * 0.02562 * 14 13 12 19 19 C 1.46501 * 126.03771 * 180.02562 * 18 14 13 20 20 N 1.30837 * 125.89800 * 214.69253 * 12 2 1 21 21 H 1.08999 * 109.47483 * 296.33226 * 1 2 3 22 22 H 1.09000 * 109.46949 * 56.33269 * 1 2 3 23 23 H 1.09001 * 109.46791 * 176.32975 * 1 2 3 24 24 H 0.96991 * 119.99842 * 354.31656 * 7 6 4 25 25 H 1.08009 * 126.03326 * 0.02562 * 13 12 2 26 26 H 1.08998 * 115.55098 * 179.30977 * 15 14 13 27 27 H 1.08999 * 117.49933 * 359.97438 * 16 15 14 28 28 H 1.09000 * 117.49945 * 145.01538 * 16 15 14 29 29 H 1.08998 * 117.50455 * 252.51174 * 17 16 15 30 30 H 1.09000 * 117.51627 * 107.47667 * 17 16 15 31 31 H 1.08996 * 109.47059 * 89.99780 * 19 18 14 32 32 H 1.09003 * 109.46582 * 210.00110 * 19 18 14 33 33 H 1.08997 * 109.46881 * 329.99170 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.2637 -1.7646 -1.1886 6 6 2.1968 -0.0148 -2.4093 7 7 1.7893 1.2324 -2.4992 8 14 2.9981 -0.8438 -3.8790 9 1 3.0570 0.1112 -5.0147 10 1 4.3747 -1.2684 -3.5182 11 1 2.2005 -2.0330 -4.2724 12 6 2.0323 -0.7103 1.2305 13 6 1.4307 -1.8144 1.8433 14 6 2.1825 -2.1569 2.9149 15 6 1.9075 -3.2922 3.8669 16 6 1.2565 -4.5527 3.2938 17 6 0.4447 -3.6097 4.1841 18 7 3.2228 -1.2996 2.9785 19 6 4.2863 -1.3081 3.9860 20 7 3.1096 -0.4042 1.9070 21 1 -0.3634 0.4558 0.9210 22 1 -0.3633 0.5697 -0.8553 23 1 -0.3633 -1.0256 -0.0658 24 1 1.2999 1.6367 -1.7658 25 1 0.5262 -2.3070 1.5179 26 1 2.6355 -3.4210 4.6678 27 1 1.0268 -4.5605 2.2283 28 1 1.5564 -5.5111 3.7175 29 1 0.2105 -3.9476 5.1935 30 1 -0.3186 -2.9970 3.7045 31 1 5.1056 -1.9405 3.6441 32 1 4.6506 -0.2920 4.1382 33 1 3.8939 -1.6978 4.9252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260139080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:18 Heat of formation + Delta-G solvation = 66.324485 kcal Electronic energy + Delta-G solvation = -14748.386523 eV Core-core repulsion = 12389.346460 eV Total energy + Delta-G solvation = -2359.040064 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.20557 -38.01767 -36.78877 -34.17572 -31.95297 -30.69873 -27.22026 -26.85147 -24.59837 -23.55112 -23.22779 -20.76574 -20.11691 -18.84491 -17.72437 -16.40263 -16.05483 -15.79831 -15.65262 -15.05442 -14.69268 -14.53218 -13.69729 -13.47572 -13.28370 -13.07439 -12.72590 -12.62622 -12.47768 -12.37741 -11.97868 -11.86615 -11.84268 -11.51227 -11.14344 -10.81336 -10.50496 -9.71549 -9.29339 -8.61643 -6.33207 0.92826 1.50618 1.59133 1.74767 1.79431 1.93869 2.58422 3.05893 3.18801 3.51403 3.67570 3.94342 4.07312 4.11911 4.28206 4.38998 4.57117 4.60214 4.71012 4.74844 4.80633 4.82272 4.93393 5.03709 5.05547 5.28546 5.28893 5.29091 5.62065 5.79131 6.04001 6.18518 6.29130 6.60958 6.96667 7.44280 8.76166 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.032129 B = 0.007649 C = 0.007386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.277080 B = 3659.785842 C = 3790.055778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.091 3.909 3 H 0.005 0.995 4 C -0.591 4.591 5 H 0.038 0.962 6 C -0.027 4.027 7 N -0.934 5.934 8 Si 1.112 2.888 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.265 1.265 12 C 0.102 3.898 13 C -0.290 4.290 14 C 0.118 3.882 15 C -0.115 4.115 16 C -0.157 4.157 17 C -0.149 4.149 18 N -0.387 5.387 19 C 0.095 3.905 20 N -0.358 5.358 21 H 0.039 0.961 22 H 0.035 0.965 23 H 0.052 0.948 24 H 0.260 0.740 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.082 0.918 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.063 -11.636 15.349 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.023 0.977 4 C -0.630 4.630 5 H 0.057 0.943 6 C -0.225 4.225 7 N -0.571 5.571 8 Si 0.934 3.066 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.063 4.063 13 C -0.319 4.319 14 C -0.010 4.010 15 C -0.134 4.134 16 C -0.194 4.194 17 C -0.187 4.187 18 N -0.168 5.168 19 C -0.045 4.045 20 N -0.180 5.180 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.159 0.841 26 H 0.160 0.840 27 H 0.100 0.900 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.611 -10.550 14.040 17.636 hybrid contribution -1.068 -0.188 1.181 1.604 sum 0.543 -10.738 15.221 18.636 Atomic orbital electron populations 1.21652 0.96067 1.00597 0.98751 1.17374 0.93364 0.93642 0.88588 0.97653 1.21982 1.48266 0.96825 0.95898 0.94312 1.27237 0.96078 0.95577 1.03602 1.70875 1.36868 1.14063 1.35280 0.83013 0.75990 0.75035 0.72583 1.20398 1.20660 1.18983 1.22757 0.92007 0.96055 0.95498 1.21051 1.06306 1.03504 1.01025 1.20654 0.89267 0.93888 0.97224 1.20601 0.99585 0.93330 0.99912 1.23142 1.02410 0.93944 0.99918 1.23148 0.91212 1.01958 1.02351 1.48722 1.21520 1.23809 1.22781 1.22110 0.88351 1.04760 0.89283 1.77283 1.21912 1.17092 1.01707 0.94181 0.94600 0.92855 0.92999 0.84142 0.84043 0.89970 0.85270 0.85069 0.89533 0.90124 0.89659 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.46 8.60 71.98 0.62 -4.84 16 2 C 0.09 5.09 2.37 -12.28 -0.03 5.06 16 3 H 0.01 0.33 7.09 -2.39 -0.02 0.31 16 4 C -0.59 -35.53 8.29 25.60 0.21 -35.31 16 5 H 0.04 2.35 7.82 -2.91 -0.02 2.33 16 6 C -0.03 -1.60 5.45 84.65 0.46 -1.14 16 7 N -0.93 -59.06 13.55 21.45 0.29 -58.77 16 8 Si 1.11 52.62 29.91 68.60 2.05 54.68 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 C 0.10 5.16 6.11 43.10 0.26 5.43 16 13 C -0.29 -12.20 8.99 21.99 0.20 -12.01 16 14 C 0.12 4.08 6.62 41.40 0.27 4.35 16 15 C -0.11 -2.54 5.96 -11.54 -0.07 -2.60 16 16 C -0.16 -3.01 10.04 30.59 0.31 -2.70 16 17 C -0.15 -2.70 10.05 30.59 0.31 -2.39 16 18 N -0.39 -14.37 4.01 -356.04 -1.43 -15.80 16 19 C 0.09 2.24 11.21 127.77 1.43 3.67 16 20 N -0.36 -17.70 12.58 -47.39 -0.60 -18.30 16 21 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.03 1.80 7.45 -2.39 -0.02 1.78 16 23 H 0.05 2.43 7.50 -2.39 -0.02 2.41 16 24 H 0.26 16.56 6.20 -92.71 -0.57 15.99 16 25 H 0.14 5.55 7.54 -2.91 -0.02 5.53 16 26 H 0.14 2.22 7.26 -2.39 -0.02 2.20 16 27 H 0.08 1.96 7.93 -2.39 -0.02 1.94 16 28 H 0.13 1.69 8.14 -2.39 -0.02 1.68 16 29 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.87 7.96 -2.39 -0.02 1.85 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.12 1.80 7.23 -2.39 -0.02 1.78 16 Total: -1.00 -76.69 279.75 5.57 -71.11 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.28 Total: 9.57 kcal Atomic # 6 Polarization: -46.47 SS G_CDS: 3.98 Total: -42.49 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -1.73 Total: -92.87 kcal Atomic # 14 Polarization: 52.62 SS G_CDS: 2.05 Total: 54.68 kcal Total: -76.69 5.57 -71.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.437 kcal (2) G-P(sol) polarization free energy of solvation -76.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds