Wall clock time and date at job start Mon Mar 30 2020 03:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.47439 * 2 1 4 4 C 1.50705 * 109.47342 * 119.99856 * 2 1 3 5 5 H 1.08002 * 120.00234 * 119.99451 * 4 2 1 6 6 C 1.37876 * 119.99760 * 300.00033 * 4 2 1 7 7 N 1.31510 * 119.99494 * 179.97438 * 6 4 2 8 8 Si 1.86791 * 120.00284 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47325 * 89.99844 * 8 6 4 10 10 H 1.48497 * 109.47415 * 210.00147 * 8 6 4 11 11 H 1.48504 * 109.46922 * 329.99841 * 8 6 4 12 12 C 1.50706 * 109.47188 * 239.99809 * 2 1 3 13 13 C 1.39868 * 125.89484 * 325.00003 * 12 2 1 14 14 C 1.35325 * 107.91737 * 179.73392 * 13 12 2 15 15 C 1.50696 * 126.12378 * 180.24396 * 14 13 12 16 16 C 1.52999 * 117.50217 * 33.65018 * 15 14 13 17 17 C 1.52997 * 117.50274 * 325.02191 * 15 14 13 18 18 N 1.34941 * 107.74555 * 0.26206 * 14 13 12 19 19 C 1.46498 * 126.04014 * 179.97438 * 18 14 13 20 20 N 1.30842 * 125.90162 * 145.21335 * 12 2 1 21 21 H 1.09000 * 109.47169 * 300.00304 * 1 2 3 22 22 H 1.09007 * 109.47197 * 59.99903 * 1 2 3 23 23 H 1.08997 * 109.47439 * 179.97438 * 1 2 3 24 24 H 0.97007 * 120.00115 * 180.02562 * 7 6 4 25 25 H 1.08002 * 126.04477 * 0.02562 * 13 12 2 26 26 H 1.08999 * 115.54580 * 179.35427 * 15 14 13 27 27 H 1.08996 * 117.49766 * 359.97438 * 16 15 14 28 28 H 1.09002 * 117.49922 * 145.01886 * 16 15 14 29 29 H 1.08998 * 117.50086 * 214.97811 * 17 15 14 30 30 H 1.09004 * 117.49561 * 359.97438 * 17 15 14 31 31 H 1.08994 * 109.47427 * 90.00207 * 19 18 14 32 32 H 1.08999 * 109.47247 * 210.00793 * 19 18 14 33 33 H 1.09007 * 109.46720 * 330.00755 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1773 1.4922 12 6 2.0323 -0.7105 -1.2305 13 6 1.4306 -1.8146 -1.8430 14 6 2.1790 -2.1532 -2.9184 15 6 1.8995 -3.2837 -3.8748 16 6 0.4349 -3.6183 -4.1646 17 6 1.2778 -4.5581 -3.3001 18 7 3.2205 -1.2975 -2.9806 19 6 4.2813 -1.3029 -3.9910 20 7 3.1087 -0.4034 -1.9080 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.9026 -0.5283 4.4376 25 1 0.5257 -2.3067 -1.5182 26 1 2.6127 -3.3958 -4.6914 27 1 -0.3265 -3.0210 -3.6631 28 1 0.1843 -3.9505 -5.1721 29 1 1.5817 -5.5085 -3.7388 30 1 1.0714 -4.5790 -2.2300 31 1 3.9884 -0.6702 -4.8287 32 1 5.2031 -0.9211 -3.5520 33 1 4.4417 -2.3217 -4.3439 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260142952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:21 Heat of formation + Delta-G solvation = 101.559204 kcal Electronic energy + Delta-G solvation = -14773.978156 eV Core-core repulsion = 12416.465985 eV Total energy + Delta-G solvation = -2357.512171 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70909 -36.95798 -34.78813 -32.37590 -30.79069 -29.23235 -25.90123 -25.03737 -23.26412 -22.36276 -21.87948 -18.94382 -18.57391 -16.62941 -16.45597 -15.01762 -14.88246 -14.61943 -14.14933 -13.43276 -13.11655 -12.79279 -12.43999 -12.16953 -12.06356 -11.61015 -11.51997 -11.18754 -10.95523 -10.74930 -10.57030 -10.32533 -10.12778 -9.61847 -9.45315 -9.13998 -8.50812 -8.16275 -7.76613 -6.01390 -4.00373 2.35646 3.06129 3.32088 3.43212 3.45894 3.58866 4.06325 4.46026 4.60460 4.80363 5.00091 5.02286 5.11105 5.30925 5.36559 5.56251 5.61791 5.69241 5.75832 5.98775 6.15295 6.24221 6.42584 6.46896 6.51554 6.69448 6.81474 7.03645 7.44817 7.48897 7.62754 7.76291 8.57046 8.58177 9.02888 9.58793 11.11833 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.035762 B = 0.007893 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.771863 B = 3546.500824 C = 3788.857146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 H 0.041 0.959 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.265 1.265 12 C 0.134 3.866 13 C -0.255 4.255 14 C 0.096 3.904 15 C -0.098 4.098 16 C -0.163 4.163 17 C -0.163 4.163 18 N -0.389 5.389 19 C 0.109 3.891 20 N -0.307 5.307 21 H 0.043 0.957 22 H 0.031 0.969 23 H 0.056 0.944 24 H 0.264 0.736 25 H 0.140 0.860 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 -4.270 -15.940 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.058 3.942 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.539 5.539 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.190 1.190 12 C -0.032 4.032 13 C -0.285 4.285 14 C -0.030 4.030 15 C -0.118 4.118 16 C -0.201 4.201 17 C -0.201 4.201 18 N -0.171 5.171 19 C -0.034 4.034 20 N -0.127 5.127 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.157 0.843 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.781 -3.472 -15.964 16.356 hybrid contribution -1.082 0.134 0.239 1.116 sum -1.863 -3.338 -15.726 16.184 Atomic orbital electron populations 1.22103 0.97947 1.01125 0.98704 1.17763 0.91691 0.95887 0.88852 0.94062 1.20794 1.31921 1.13452 0.87795 0.90811 1.24946 0.95811 0.96653 0.95631 1.69888 1.45718 1.40398 0.97867 0.86845 0.80529 0.83836 0.77012 1.20476 1.22467 1.19008 1.22633 0.90979 0.94401 0.95232 1.21000 1.05158 1.03267 0.99055 1.19978 0.91115 0.94022 0.97860 1.20326 0.97518 0.94442 0.99541 1.23044 0.92830 1.03164 1.01063 1.23078 1.03028 0.93077 1.00901 1.48287 1.20468 1.25148 1.23207 1.21614 0.89872 1.02386 0.89485 1.77417 1.21320 1.14577 0.99433 0.93822 0.94954 0.92449 0.92630 0.84271 0.87352 0.87971 0.88502 0.88446 0.87714 0.91724 0.89743 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.27 37.15 0.31 -2.84 16 2 C 0.08 2.00 2.35 -92.92 -0.22 1.78 16 3 H 0.04 1.08 7.20 -51.93 -0.37 0.71 16 4 C -0.50 -14.68 9.13 -34.44 -0.31 -15.00 16 5 H 0.07 2.39 7.98 -52.49 -0.42 1.97 16 6 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 7 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 8 Si 0.89 22.30 24.37 -169.99 -4.14 18.16 16 9 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 12 C 0.13 3.16 6.06 -82.40 -0.50 2.66 16 13 C -0.26 -5.19 8.98 -40.01 -0.36 -5.55 16 14 C 0.10 1.69 6.62 -82.27 -0.54 1.15 16 15 C -0.10 -1.25 5.96 -91.78 -0.55 -1.80 16 16 C -0.16 -1.76 10.04 -26.73 -0.27 -2.03 16 17 C -0.16 -1.85 10.05 -26.73 -0.27 -2.12 16 18 N -0.39 -7.19 4.01 -63.89 -0.26 -7.45 16 19 C 0.11 1.37 11.21 59.85 0.67 2.04 16 20 N -0.31 -7.08 12.58 33.67 0.42 -6.66 16 21 H 0.04 1.00 3.27 -51.93 -0.17 0.83 16 22 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 1.22 7.30 -51.93 -0.38 0.84 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.14 2.63 7.42 -52.49 -0.39 2.24 16 26 H 0.11 1.13 7.26 -51.93 -0.38 0.75 16 27 H 0.10 1.19 7.93 -51.93 -0.41 0.78 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.35 7.96 -51.93 -0.41 0.94 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.75 7.24 -51.92 -0.38 0.37 16 LS Contribution 272.13 15.07 4.10 4.10 Total: -1.00 -33.69 272.13 -5.85 -39.53 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.60 Total: -0.69 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.14 Total: -19.71 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.94 Total: -41.39 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.16 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.69 -5.85 -39.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.094 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds