Wall clock time and date at job start Mon Mar 30 2020 03:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.47439 * 2 1 4 4 C 1.50705 * 109.47342 * 119.99856 * 2 1 3 5 5 H 1.08002 * 120.00234 * 119.99451 * 4 2 1 6 6 C 1.37876 * 119.99760 * 300.00033 * 4 2 1 7 7 N 1.31510 * 119.99494 * 179.97438 * 6 4 2 8 8 Si 1.86791 * 120.00284 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47325 * 89.99844 * 8 6 4 10 10 H 1.48497 * 109.47415 * 210.00147 * 8 6 4 11 11 H 1.48504 * 109.46922 * 329.99841 * 8 6 4 12 12 C 1.50706 * 109.47188 * 239.99809 * 2 1 3 13 13 C 1.39868 * 125.89484 * 325.00003 * 12 2 1 14 14 C 1.35325 * 107.91737 * 179.73392 * 13 12 2 15 15 C 1.50696 * 126.12378 * 180.24396 * 14 13 12 16 16 C 1.52999 * 117.50217 * 33.65018 * 15 14 13 17 17 C 1.52997 * 117.50274 * 325.02191 * 15 14 13 18 18 N 1.34941 * 107.74555 * 0.26206 * 14 13 12 19 19 C 1.46498 * 126.04014 * 179.97438 * 18 14 13 20 20 N 1.30842 * 125.90162 * 145.21335 * 12 2 1 21 21 H 1.09000 * 109.47169 * 300.00304 * 1 2 3 22 22 H 1.09007 * 109.47197 * 59.99903 * 1 2 3 23 23 H 1.08997 * 109.47439 * 179.97438 * 1 2 3 24 24 H 0.97007 * 120.00115 * 180.02562 * 7 6 4 25 25 H 1.08002 * 126.04477 * 0.02562 * 13 12 2 26 26 H 1.08999 * 115.54580 * 179.35427 * 15 14 13 27 27 H 1.08996 * 117.49766 * 359.97438 * 16 15 14 28 28 H 1.09002 * 117.49922 * 145.01886 * 16 15 14 29 29 H 1.08998 * 117.50086 * 214.97811 * 17 15 14 30 30 H 1.09004 * 117.49561 * 359.97438 * 17 15 14 31 31 H 1.08994 * 109.47427 * 90.00207 * 19 18 14 32 32 H 1.08999 * 109.47247 * 210.00793 * 19 18 14 33 33 H 1.09007 * 109.46720 * 330.00755 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1773 1.4922 12 6 2.0323 -0.7105 -1.2305 13 6 1.4306 -1.8146 -1.8430 14 6 2.1790 -2.1532 -2.9184 15 6 1.8995 -3.2837 -3.8748 16 6 0.4349 -3.6183 -4.1646 17 6 1.2778 -4.5581 -3.3001 18 7 3.2205 -1.2975 -2.9806 19 6 4.2813 -1.3029 -3.9910 20 7 3.1087 -0.4034 -1.9080 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.9026 -0.5283 4.4376 25 1 0.5257 -2.3067 -1.5182 26 1 2.6127 -3.3958 -4.6914 27 1 -0.3265 -3.0210 -3.6631 28 1 0.1843 -3.9505 -5.1721 29 1 1.5817 -5.5085 -3.7388 30 1 1.0714 -4.5790 -2.2300 31 1 3.9884 -0.6702 -4.8287 32 1 5.2031 -0.9211 -3.5520 33 1 4.4417 -2.3217 -4.3439 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260142952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:21 Heat of formation + Delta-G solvation = 78.678572 kcal Electronic energy + Delta-G solvation = -14774.970335 eV Core-core repulsion = 12416.465985 eV Total energy + Delta-G solvation = -2358.504350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.18859 -37.98681 -36.62508 -34.22425 -32.61023 -30.68041 -27.26373 -27.12733 -24.56642 -23.58142 -23.19907 -20.47135 -20.02974 -18.75221 -17.87818 -16.74238 -16.21436 -15.90221 -15.52849 -14.97335 -14.68964 -14.53907 -14.15337 -13.59986 -13.39234 -13.02615 -12.99783 -12.64669 -12.36723 -12.32033 -11.98234 -11.83698 -11.55933 -11.37350 -11.27208 -11.11319 -10.74278 -9.71615 -9.25055 -8.30496 -6.35663 0.95164 1.31715 1.38767 1.49863 1.76544 1.95683 2.33165 3.03739 3.08928 3.53478 3.69824 3.96599 4.09131 4.14245 4.26843 4.43501 4.57386 4.61725 4.64322 4.76149 4.82582 4.83615 4.92994 5.04211 5.07567 5.16878 5.31501 5.32836 5.59208 5.65020 5.80175 6.28189 6.30752 6.67049 6.96603 7.27676 8.86803 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.035762 B = 0.007893 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.771863 B = 3546.500824 C = 3788.857146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.080 3.920 3 H 0.027 0.973 4 C -0.508 4.508 5 H 0.021 0.979 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.955 3.045 9 H -0.254 1.254 10 H -0.295 1.295 11 H -0.251 1.251 12 C 0.102 3.898 13 C -0.286 4.286 14 C 0.116 3.884 15 C -0.114 4.114 16 C -0.146 4.146 17 C -0.161 4.161 18 N -0.385 5.385 19 C 0.095 3.905 20 N -0.352 5.352 21 H 0.040 0.960 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.268 0.732 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 -4.491 -18.776 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.059 3.941 3 H 0.045 0.955 4 C -0.547 4.547 5 H 0.039 0.961 6 C -0.183 4.183 7 N -0.588 5.588 8 Si 0.780 3.220 9 H -0.180 1.180 10 H -0.222 1.222 11 H -0.175 1.175 12 C -0.063 4.063 13 C -0.315 4.315 14 C -0.012 4.012 15 C -0.133 4.133 16 C -0.184 4.184 17 C -0.199 4.199 18 N -0.167 5.167 19 C -0.045 4.045 20 N -0.174 5.174 21 H 0.059 0.941 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.161 0.839 26 H 0.159 0.841 27 H 0.108 0.892 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.936 -3.690 -18.822 19.278 hybrid contribution -0.573 0.075 1.015 1.168 sum -2.510 -3.616 -17.807 18.343 Atomic orbital electron populations 1.21973 0.95377 1.01857 0.99857 1.17605 0.93767 0.94568 0.88167 0.95540 1.20928 1.31335 1.12174 0.90233 0.96091 1.25863 0.97295 1.00203 0.94889 1.70040 1.47551 1.42600 0.98637 0.85761 0.79418 0.79456 0.77321 1.17989 1.22245 1.17529 1.22481 0.92227 0.96067 0.95485 1.21093 1.06444 1.03379 1.00625 1.20639 0.89365 0.93970 0.97253 1.20593 0.99904 0.93150 0.99687 1.23151 0.90994 1.01781 1.02473 1.23143 1.02873 0.93881 0.99999 1.48683 1.21497 1.23941 1.22608 1.22114 0.88331 1.05368 0.88708 1.77250 1.21592 1.17065 1.01483 0.94138 0.92036 0.92038 0.92275 0.83944 0.84068 0.89242 0.85107 0.85454 0.90158 0.89221 0.89898 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.27 71.98 0.59 -5.24 16 2 C 0.08 4.14 2.35 -12.29 -0.03 4.11 16 3 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 4 C -0.51 -31.27 9.13 25.60 0.23 -31.03 16 5 H 0.02 1.45 7.98 -2.91 -0.02 1.43 16 6 C 0.01 0.88 5.45 84.66 0.46 1.34 16 7 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 8 Si 0.95 46.29 24.37 68.60 1.67 47.96 16 9 H -0.25 -11.36 6.87 99.48 0.68 -10.67 16 10 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 11 H -0.25 -11.54 6.53 99.48 0.65 -10.89 16 12 C 0.10 4.96 6.06 43.10 0.26 5.22 16 13 C -0.29 -11.75 8.98 21.99 0.20 -11.56 16 14 C 0.12 3.92 6.62 41.41 0.27 4.20 16 15 C -0.11 -2.50 5.96 -11.54 -0.07 -2.56 16 16 C -0.15 -2.62 10.04 30.60 0.31 -2.31 16 17 C -0.16 -3.19 10.05 30.60 0.31 -2.88 16 18 N -0.39 -13.83 4.01 -356.04 -1.43 -15.26 16 19 C 0.09 2.13 11.21 127.77 1.43 3.57 16 20 N -0.35 -16.56 12.58 -47.38 -0.60 -17.16 16 21 H 0.04 1.78 3.27 -2.39 -0.01 1.77 16 22 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 23 H 0.06 2.60 7.30 -2.39 -0.02 2.58 16 24 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 25 H 0.14 5.50 7.42 -2.91 -0.02 5.48 16 26 H 0.14 2.19 7.26 -2.39 -0.02 2.17 16 27 H 0.09 1.87 7.93 -2.39 -0.02 1.85 16 28 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.13 1.77 8.14 -2.39 -0.02 1.76 16 30 H 0.08 2.01 7.96 -2.38 -0.02 1.99 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 1.74 7.24 -2.38 -0.02 1.72 16 Total: -1.00 -77.79 272.13 4.93 -72.85 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.01 Total: 9.77 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 3.97 Total: -37.16 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -1.73 Total: -93.42 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.67 Total: 47.96 kcal Total: -77.79 4.93 -72.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.533 kcal (2) G-P(sol) polarization free energy of solvation -77.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds