Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 110.99841 * 2 1 4 4 C 1.46900 * 111.00103 * 123.95537 * 2 1 3 5 5 C 1.52995 * 109.47051 * 55.20072 * 4 2 1 6 6 C 1.50700 * 109.46998 * 175.20075 * 4 2 1 7 7 H 1.07999 * 119.99919 * 125.52844 * 6 4 2 8 8 C 1.37878 * 119.99900 * 305.52645 * 6 4 2 9 9 N 1.31508 * 119.99429 * 197.57945 * 8 6 4 10 10 Si 1.86796 * 120.00198 * 17.30963 * 8 6 4 11 11 H 1.48491 * 109.47351 * 180.27365 * 10 8 6 12 12 H 1.48502 * 109.46987 * 300.27445 * 10 8 6 13 13 H 1.48505 * 109.47095 * 60.27154 * 10 8 6 14 14 C 1.50701 * 109.46900 * 295.19952 * 4 2 1 15 15 C 1.38671 * 120.41569 * 185.83934 * 14 4 2 16 16 C 1.38630 * 118.42093 * 179.78626 * 15 14 4 17 17 C 1.38234 * 119.15755 * 0.51209 * 16 15 14 18 18 N 1.31851 * 120.76559 * 359.72586 * 17 16 15 19 19 C 1.31892 * 121.72489 * 0.02562 * 18 17 16 20 20 H 1.09004 * 109.47326 * 273.04829 * 1 2 3 21 21 H 1.09007 * 109.47798 * 33.05122 * 1 2 3 22 22 H 1.09010 * 109.47401 * 153.05151 * 1 2 3 23 23 H 1.08995 * 109.46996 * 203.46782 * 3 2 1 24 24 H 1.09001 * 109.47149 * 323.46727 * 3 2 1 25 25 H 1.09001 * 109.47259 * 83.46984 * 3 2 1 26 26 H 1.09004 * 109.47205 * 174.54658 * 5 4 2 27 27 H 1.09004 * 109.47082 * 294.53799 * 5 4 2 28 28 H 1.08997 * 109.47431 * 54.54555 * 5 4 2 29 29 H 0.96996 * 120.00607 * 354.65620 * 9 8 6 30 30 H 1.07997 * 120.79274 * 0.02562 * 15 14 4 31 31 H 1.08000 * 120.42229 * 180.22206 * 16 15 14 32 32 H 1.07995 * 119.61664 * 179.75193 * 17 16 15 33 33 H 1.07998 * 119.61690 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.4097 -2.1792 1.1156 6 6 3.4972 -0.8431 1.0392 7 1 4.1099 -0.5196 1.8677 8 6 4.0890 -1.3267 -0.1083 9 7 5.3437 -1.7199 -0.0855 10 14 3.1064 -1.4304 -1.6936 11 1 3.9631 -1.9862 -2.7716 12 1 1.9307 -2.3145 -1.4903 13 1 2.6441 -0.0728 -2.0791 14 6 1.6107 -0.0826 2.4244 15 6 2.0938 -0.5479 3.6381 16 6 1.7169 0.1147 4.7960 17 6 0.8695 1.2029 4.7038 18 7 0.4255 1.6147 3.5326 19 6 0.7670 1.0117 2.4104 20 1 -0.3634 0.0546 1.0262 21 1 -0.3635 0.8614 -0.5605 22 1 -0.3634 -0.9161 -0.4658 23 1 3.0056 1.3729 -0.4092 24 1 1.3547 2.0066 -0.6118 25 1 2.0165 1.7526 1.0210 26 1 1.8728 -2.7767 1.9009 27 1 0.3338 -2.1293 1.2839 28 1 1.6050 -2.6385 0.1466 29 1 5.8757 -1.5982 0.7164 30 1 2.7511 -1.4038 3.6800 31 1 2.0771 -0.2180 5.7583 32 1 0.5680 1.7221 5.6015 33 1 0.3829 1.3775 1.4696 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260251859.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = 74.361078 kcal Electronic energy + Delta-G solvation = -15841.600103 eV Core-core repulsion = 13482.908532 eV Total energy + Delta-G solvation = -2358.691571 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35203 -37.42403 -33.08332 -32.02271 -30.63748 -29.40442 -27.33643 -24.49330 -23.43034 -22.98443 -22.46418 -19.28237 -17.23162 -16.72567 -15.88350 -15.13366 -14.39388 -14.15138 -13.78199 -13.76524 -13.04953 -12.69118 -12.31130 -12.19557 -11.70459 -11.67591 -11.55908 -11.00283 -10.80838 -10.75864 -10.41813 -9.83259 -9.60674 -9.22489 -8.98815 -8.92245 -8.25832 -8.17684 -7.35130 -6.45873 -4.19390 1.60941 1.83796 3.65060 3.75481 4.05101 4.30781 4.67476 4.79913 4.85410 5.28369 5.38757 5.48610 5.57171 5.59930 5.76879 5.92851 6.01012 6.04949 6.13237 6.31995 6.40477 6.43302 6.52486 6.61920 6.68334 6.82251 6.88801 7.11823 7.26404 7.64689 7.95369 8.17375 8.32138 8.40277 8.85818 9.55514 10.91106 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.034973 B = 0.012774 C = 0.010978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.419563 B = 2191.348308 C = 2549.866284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.535 5.535 3 C 0.026 3.974 4 C 0.245 3.755 5 C -0.137 4.137 6 C -0.592 4.592 7 H 0.057 0.943 8 C 0.044 3.956 9 N -0.897 5.897 10 Si 1.102 2.898 11 H -0.328 1.328 12 H -0.287 1.287 13 H -0.279 1.279 14 C -0.104 4.104 15 C -0.064 4.064 16 C -0.178 4.178 17 C 0.066 3.934 18 N -0.492 5.492 19 C 0.064 3.936 20 H 0.040 0.960 21 H 0.056 0.944 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.265 0.735 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 2.903 4.353 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 N -0.260 5.260 3 C -0.121 4.121 4 C 0.157 3.843 5 C -0.195 4.195 6 C -0.630 4.630 7 H 0.076 0.924 8 C -0.163 4.163 9 N -0.530 5.530 10 Si 0.937 3.063 11 H -0.259 1.259 12 H -0.215 1.215 13 H -0.206 1.206 14 C -0.108 4.108 15 C -0.091 4.091 16 C -0.198 4.198 17 C -0.091 4.091 18 N -0.201 5.201 19 C -0.092 4.092 20 H 0.058 0.942 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.152 0.848 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.060 2.907 2.346 9.800 hybrid contribution 0.356 0.245 2.569 2.605 sum -8.704 3.151 4.915 10.481 Atomic orbital electron populations 1.22886 0.90272 1.01676 1.00265 1.62366 1.05349 1.13997 1.44264 1.22511 1.01445 0.88356 0.99837 1.18309 0.96446 0.89107 0.80468 1.22206 0.97053 0.97317 1.02898 1.21715 0.87585 1.49845 1.03859 0.92440 1.26057 0.96921 0.90745 1.02537 1.70962 1.09674 1.39499 1.32827 0.83157 0.72657 0.77194 0.73312 1.25944 1.21476 1.20575 1.21957 0.94241 0.96039 0.98572 1.21478 0.96942 0.99178 0.91462 1.22080 1.00458 0.98107 0.99196 1.22504 0.95917 0.95105 0.95556 1.67645 1.23539 1.30208 0.98694 1.23305 0.95692 0.93519 0.96690 0.94167 0.92499 0.92023 0.90835 0.93420 0.94528 0.92883 0.95580 0.91145 0.92518 0.84814 0.85723 0.83849 0.81924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 7.41 60.06 0.45 0.39 16 2 N -0.54 -11.12 1.26 -238.11 -0.30 -11.42 16 3 C 0.03 0.52 7.29 60.07 0.44 0.96 16 4 C 0.25 5.43 0.14 -133.91 -0.02 5.41 16 5 C -0.14 -2.89 7.54 37.15 0.28 -2.61 16 6 C -0.59 -15.52 7.14 -34.44 -0.25 -15.77 16 7 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 8 C 0.04 1.23 5.35 -17.82 -0.10 1.13 16 9 N -0.90 -26.76 13.69 55.43 0.76 -26.00 16 10 Si 1.10 26.93 24.05 -169.99 -4.09 22.84 16 11 H -0.33 -8.43 7.11 56.52 0.40 -8.03 16 12 H -0.29 -6.60 5.45 56.52 0.31 -6.29 16 13 H -0.28 -6.47 5.98 56.52 0.34 -6.13 16 14 C -0.10 -2.14 4.01 -104.48 -0.42 -2.56 16 15 C -0.06 -1.23 8.80 -39.28 -0.35 -1.57 16 16 C -0.18 -2.90 10.11 -39.44 -0.40 -3.30 16 17 C 0.07 1.08 11.18 -17.54 -0.20 0.88 16 18 N -0.49 -9.14 10.36 -13.25 -0.14 -9.28 16 19 C 0.06 1.22 6.84 -17.55 -0.12 1.10 16 20 H 0.04 0.69 4.77 -51.93 -0.25 0.44 16 21 H 0.06 0.85 7.41 -51.92 -0.38 0.46 16 22 H 0.06 1.03 7.77 -51.92 -0.40 0.62 16 23 H 0.07 1.62 7.05 -51.93 -0.37 1.25 16 24 H 0.05 0.80 7.44 -51.93 -0.39 0.41 16 25 H 0.04 0.74 4.73 -51.93 -0.25 0.49 16 26 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 27 H 0.03 0.48 7.13 -51.93 -0.37 0.11 16 28 H 0.07 1.56 4.74 -51.93 -0.25 1.32 16 29 H 0.26 7.85 8.73 -40.82 -0.36 7.49 16 30 H 0.13 2.58 7.96 -52.49 -0.42 2.16 16 31 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.16 2.97 3.70 -52.49 -0.19 2.77 16 LS Contribution 246.88 15.07 3.72 3.72 Total: -1.00 -29.49 246.88 -4.96 -34.45 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.23 Total: 1.63 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.68 Total: -15.93 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.32 Total: -46.71 kcal Atomic # 14 Polarization: 26.93 SS G_CDS: -4.09 Total: 22.84 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.49 -4.96 -34.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251859.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.806 kcal (2) G-P(sol) polarization free energy of solvation -29.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds