Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 110.99841 * 2 1 4 4 C 1.46900 * 111.00103 * 123.95537 * 2 1 3 5 5 C 1.52995 * 109.47051 * 55.20072 * 4 2 1 6 6 C 1.50700 * 109.46998 * 175.20075 * 4 2 1 7 7 H 1.07999 * 119.99919 * 125.52844 * 6 4 2 8 8 C 1.37878 * 119.99900 * 305.52645 * 6 4 2 9 9 N 1.31508 * 119.99429 * 197.57945 * 8 6 4 10 10 Si 1.86796 * 120.00198 * 17.30963 * 8 6 4 11 11 H 1.48491 * 109.47351 * 180.27365 * 10 8 6 12 12 H 1.48502 * 109.46987 * 300.27445 * 10 8 6 13 13 H 1.48505 * 109.47095 * 60.27154 * 10 8 6 14 14 C 1.50701 * 109.46900 * 295.19952 * 4 2 1 15 15 C 1.38671 * 120.41569 * 185.83934 * 14 4 2 16 16 C 1.38630 * 118.42093 * 179.78626 * 15 14 4 17 17 C 1.38234 * 119.15755 * 0.51209 * 16 15 14 18 18 N 1.31851 * 120.76559 * 359.72586 * 17 16 15 19 19 C 1.31892 * 121.72489 * 0.02562 * 18 17 16 20 20 H 1.09004 * 109.47326 * 273.04829 * 1 2 3 21 21 H 1.09007 * 109.47798 * 33.05122 * 1 2 3 22 22 H 1.09010 * 109.47401 * 153.05151 * 1 2 3 23 23 H 1.08995 * 109.46996 * 203.46782 * 3 2 1 24 24 H 1.09001 * 109.47149 * 323.46727 * 3 2 1 25 25 H 1.09001 * 109.47259 * 83.46984 * 3 2 1 26 26 H 1.09004 * 109.47205 * 174.54658 * 5 4 2 27 27 H 1.09004 * 109.47082 * 294.53799 * 5 4 2 28 28 H 1.08997 * 109.47431 * 54.54555 * 5 4 2 29 29 H 0.96996 * 120.00607 * 354.65620 * 9 8 6 30 30 H 1.07997 * 120.79274 * 0.02562 * 15 14 4 31 31 H 1.08000 * 120.42229 * 180.22206 * 16 15 14 32 32 H 1.07995 * 119.61664 * 179.75193 * 17 16 15 33 33 H 1.07998 * 119.61690 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.4097 -2.1792 1.1156 6 6 3.4972 -0.8431 1.0392 7 1 4.1099 -0.5196 1.8677 8 6 4.0890 -1.3267 -0.1083 9 7 5.3437 -1.7199 -0.0855 10 14 3.1064 -1.4304 -1.6936 11 1 3.9631 -1.9862 -2.7716 12 1 1.9307 -2.3145 -1.4903 13 1 2.6441 -0.0728 -2.0791 14 6 1.6107 -0.0826 2.4244 15 6 2.0938 -0.5479 3.6381 16 6 1.7169 0.1147 4.7960 17 6 0.8695 1.2029 4.7038 18 7 0.4255 1.6147 3.5326 19 6 0.7670 1.0117 2.4104 20 1 -0.3634 0.0546 1.0262 21 1 -0.3635 0.8614 -0.5605 22 1 -0.3634 -0.9161 -0.4658 23 1 3.0056 1.3729 -0.4092 24 1 1.3547 2.0066 -0.6118 25 1 2.0165 1.7526 1.0210 26 1 1.8728 -2.7767 1.9009 27 1 0.3338 -2.1293 1.2839 28 1 1.6050 -2.6385 0.1466 29 1 5.8757 -1.5982 0.7164 30 1 2.7511 -1.4038 3.6800 31 1 2.0771 -0.2180 5.7583 32 1 0.5680 1.7221 5.6015 33 1 0.3829 1.3775 1.4696 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260251859.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = 54.895524 kcal Electronic energy + Delta-G solvation = -15842.444192 eV Core-core repulsion = 13482.908532 eV Total energy + Delta-G solvation = -2359.535660 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.83333 -38.95086 -34.92824 -33.74034 -32.09693 -30.99977 -28.89439 -26.26886 -25.12900 -24.45536 -23.90092 -21.04958 -19.13307 -18.17437 -17.39576 -16.67752 -15.88248 -15.71286 -15.40039 -15.27143 -14.82794 -14.36587 -13.98802 -13.81520 -13.27276 -13.15999 -13.08653 -12.58289 -12.44551 -12.39860 -12.08446 -11.65320 -11.46089 -10.96708 -10.62535 -10.49623 -10.21752 -9.70601 -9.00099 -8.59376 -6.36268 0.22832 0.39370 1.68453 1.78984 2.10894 2.66797 2.90378 3.06138 3.44042 3.54170 3.96309 4.04788 4.14660 4.24647 4.42274 4.49054 4.61870 4.65301 4.65857 4.77293 4.87122 4.89945 5.02485 5.09386 5.20945 5.22301 5.39334 5.47685 5.81678 5.86084 6.06353 6.29022 6.50732 6.71039 7.01883 7.45608 8.71753 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.034973 B = 0.012774 C = 0.010978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.419563 B = 2191.348308 C = 2549.866284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.550 5.550 3 C 0.029 3.971 4 C 0.247 3.753 5 C -0.133 4.133 6 C -0.577 4.577 7 H 0.019 0.981 8 C 0.000 4.000 9 N -0.939 5.939 10 Si 1.133 2.867 11 H -0.350 1.350 12 H -0.262 1.262 13 H -0.258 1.258 14 C -0.130 4.130 15 C -0.084 4.084 16 C -0.169 4.169 17 C 0.072 3.928 18 N -0.504 5.504 19 C 0.063 3.937 20 H 0.044 0.956 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.083 0.917 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.250 0.750 30 H 0.119 0.881 31 H 0.160 0.840 32 H 0.185 0.815 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 4.000 5.077 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 N -0.274 5.274 3 C -0.119 4.119 4 C 0.157 3.843 5 C -0.190 4.190 6 C -0.615 4.615 7 H 0.037 0.963 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.964 3.036 11 H -0.284 1.284 12 H -0.189 1.189 13 H -0.184 1.184 14 C -0.133 4.133 15 C -0.110 4.110 16 C -0.189 4.189 17 C -0.085 4.085 18 N -0.213 5.213 19 C -0.092 4.092 20 H 0.062 0.938 21 H 0.104 0.896 22 H 0.088 0.912 23 H 0.062 0.938 24 H 0.102 0.898 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.137 0.863 31 H 0.178 0.822 32 H 0.202 0.798 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.932 4.018 3.093 12.965 hybrid contribution 1.213 -0.031 2.525 2.801 sum -10.720 3.986 5.617 12.742 Atomic orbital electron populations 1.22970 0.87436 1.03525 1.01134 1.62081 1.07902 1.14190 1.43268 1.22496 1.00666 0.88673 1.00071 1.18050 0.93605 0.90279 0.82340 1.22100 0.98661 0.96404 1.01874 1.21787 0.90276 1.47642 1.01774 0.96267 1.27106 0.96876 0.90663 1.05286 1.71066 1.11094 1.42987 1.32350 0.82777 0.72206 0.78569 0.70027 1.28404 1.18851 1.18374 1.21817 0.96177 0.97301 0.98049 1.21568 0.97316 0.99518 0.92611 1.22418 0.99481 0.97368 0.99607 1.23205 0.94511 0.94612 0.96187 1.67723 1.24006 1.30357 0.99210 1.23358 0.95437 0.92898 0.97528 0.93812 0.89608 0.91199 0.93836 0.89832 0.95027 0.93671 0.92895 0.92368 0.94060 0.86267 0.82219 0.79806 0.81034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.11 7.41 127.69 0.95 0.83 16 2 N -0.55 -21.59 1.26 -907.26 -1.14 -22.73 16 3 C 0.03 1.08 7.29 127.69 0.93 2.01 16 4 C 0.25 10.71 0.14 2.03 0.00 10.71 16 5 C -0.13 -5.43 7.54 71.98 0.54 -4.88 16 6 C -0.58 -31.04 7.14 25.60 0.18 -30.86 16 7 H 0.02 1.15 7.60 -2.91 -0.02 1.13 16 8 C 0.00 0.00 5.35 84.66 0.45 0.45 16 9 N -0.94 -58.56 13.69 21.45 0.29 -58.27 16 10 Si 1.13 54.48 24.05 68.60 1.65 56.13 16 11 H -0.35 -18.09 7.11 99.48 0.71 -17.38 16 12 H -0.26 -11.44 5.45 99.48 0.54 -10.90 16 13 H -0.26 -11.39 5.98 99.48 0.59 -10.80 16 14 C -0.13 -5.15 4.01 -19.77 -0.08 -5.23 16 15 C -0.08 -3.13 8.80 22.47 0.20 -2.93 16 16 C -0.17 -5.01 10.11 22.36 0.23 -4.78 16 17 C 0.07 2.06 11.18 84.69 0.95 3.01 16 18 N -0.50 -17.08 10.36 -195.84 -2.03 -19.11 16 19 C 0.06 2.26 6.84 84.67 0.58 2.84 16 20 H 0.04 1.33 4.77 -2.39 -0.01 1.32 16 21 H 0.09 2.13 7.41 -2.38 -0.02 2.11 16 22 H 0.07 2.04 7.77 -2.38 -0.02 2.02 16 23 H 0.04 1.88 7.05 -2.39 -0.02 1.87 16 24 H 0.08 2.52 7.44 -2.39 -0.02 2.50 16 25 H 0.03 1.23 4.73 -2.39 -0.01 1.22 16 26 H 0.04 1.86 8.04 -2.38 -0.02 1.85 16 27 H 0.05 1.85 7.13 -2.38 -0.02 1.84 16 28 H 0.06 2.50 4.74 -2.39 -0.01 2.49 16 29 H 0.25 15.75 8.73 -92.71 -0.81 14.94 16 30 H 0.12 4.70 7.96 -2.91 -0.02 4.67 16 31 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.19 3.74 8.06 -2.91 -0.02 3.71 16 33 H 0.17 5.71 3.70 -2.91 -0.01 5.70 16 Total: -1.00 -65.50 246.88 4.49 -61.01 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.79 Total: 11.79 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 4.93 Total: -28.82 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -2.88 Total: -100.11 kcal Atomic # 14 Polarization: 54.48 SS G_CDS: 1.65 Total: 56.13 kcal Total: -65.50 4.49 -61.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251859.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.907 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds