Wall clock time and date at job start Mon Mar 30 2020 03:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86798 * 120.00088 * 2 1 4 4 H 1.48499 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47275 * 300.00231 * 3 2 1 6 6 H 1.48502 * 109.47040 * 60.00226 * 3 2 1 7 7 C 1.38623 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99943 * 179.97438 * 7 2 1 9 9 O 1.34807 * 120.00553 * 359.97438 * 7 2 1 10 10 C 1.35598 * 117.00207 * 185.06273 * 9 7 2 11 11 C 1.37810 * 119.92819 * 354.34974 * 10 9 7 12 12 C 1.38746 * 120.98515 * 179.97438 * 11 10 9 13 13 C 1.37857 * 120.03839 * 0.02562 * 12 11 10 14 14 C 1.38701 * 119.92372 * 0.02562 * 13 12 11 15 15 S 1.76639 * 133.58279 * 180.02562 * 14 13 12 16 16 N 1.69587 * 95.45511 * 179.97438 * 15 14 13 17 17 C 1.28850 * 108.40765 * 359.97438 * 16 15 14 18 18 C 1.40482 * 118.88115 * 0.25230 * 17 16 15 19 19 H 0.96997 * 119.99512 * 359.97438 * 1 2 3 20 20 H 1.07993 * 119.50767 * 0.02562 * 11 10 9 21 21 H 1.08001 * 119.98221 * 179.97438 * 12 11 10 22 22 H 1.08005 * 120.03916 * 180.02562 * 13 12 11 23 23 H 1.08001 * 120.56255 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8910 2.3964 -1.2124 6 1 1.8911 2.3964 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3348 -2.3680 -0.0005 10 6 2.0693 -3.5029 0.1055 11 6 3.4456 -3.4352 0.0896 12 6 4.2185 -4.5824 0.1971 13 6 3.6119 -5.8140 0.3218 14 6 2.2280 -5.9051 0.3390 15 16 1.0981 -7.2556 0.4791 16 7 -0.3026 -6.3034 0.3942 17 6 0.0505 -5.0704 0.2711 18 6 1.4193 -4.7577 0.2268 19 1 -0.4849 0.8401 0.0004 20 1 3.9298 -2.4748 -0.0073 21 1 5.2961 -4.5106 0.1824 22 1 4.2136 -6.7070 0.4059 23 1 -0.6934 -4.2907 0.1988 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260297794.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:33 Heat of formation + Delta-G solvation = 3.911663 kcal Electronic energy + Delta-G solvation = -12170.948370 eV Core-core repulsion = 9882.569903 eV Total energy + Delta-G solvation = -2288.378467 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.26927 -39.13073 -37.04095 -34.40980 -31.39540 -30.70927 -27.51057 -25.40564 -23.56259 -22.31370 -20.25195 -19.47479 -17.64672 -16.91489 -16.72302 -16.16442 -16.00164 -15.54883 -15.15537 -14.75143 -14.25076 -13.66377 -13.27505 -12.90678 -12.66633 -12.53319 -12.10808 -11.96527 -11.69975 -11.28940 -10.98073 -10.27696 -9.81369 -8.57534 -8.54347 -6.22469 -0.44893 0.41228 0.50172 0.90423 1.27420 1.39019 1.46634 1.57181 2.13734 2.66110 3.04446 3.26886 3.66057 3.86721 4.15818 4.44768 4.62274 4.65606 4.76395 5.05041 5.19022 5.35844 5.55643 5.63948 5.90922 5.94288 6.87875 7.58391 8.65291 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.046926 B = 0.008304 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.543973 B = 3371.141403 C = 3954.396769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.015 4.015 3 Si 1.021 2.979 4 H -0.244 1.244 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.416 4.416 8 H 0.116 0.884 9 O -0.205 6.205 10 C 0.186 3.814 11 C -0.261 4.261 12 C -0.006 4.006 13 C -0.168 4.168 14 C -0.086 4.086 15 S 0.168 5.832 16 N -0.489 5.489 17 C 0.153 3.847 18 C -0.231 4.231 19 H 0.276 0.724 20 H 0.141 0.859 21 H 0.174 0.826 22 H 0.161 0.839 23 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.136 -5.948 0.482 10.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.215 4.215 3 Si 0.840 3.160 4 H -0.167 1.167 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.491 4.491 8 H 0.134 0.866 9 O -0.107 6.107 10 C 0.127 3.873 11 C -0.282 4.282 12 C -0.029 4.029 13 C -0.193 4.193 14 C -0.207 4.207 15 S 0.319 5.681 16 N -0.303 5.303 17 C -0.052 4.052 18 C -0.243 4.243 19 H 0.086 0.914 20 H 0.158 0.842 21 H 0.192 0.808 22 H 0.179 0.821 23 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.589 -7.844 0.671 10.935 hybrid contribution 0.267 2.554 -0.209 2.576 sum 7.856 -5.290 0.462 9.482 Atomic orbital electron populations 1.70183 1.08164 1.29313 1.46663 1.26662 0.96806 1.02894 0.95090 0.84484 0.78660 0.74437 0.78425 1.16713 1.19541 1.19599 1.22072 0.93177 0.80576 1.53324 0.86640 1.83879 1.36522 1.12689 1.77605 1.19483 0.91427 0.85331 0.91028 1.21200 0.91896 1.01478 1.13663 1.21441 1.01168 0.89866 0.90412 1.20283 0.89563 0.99686 1.09774 1.23512 0.99336 0.95677 1.02193 1.84210 0.92646 1.13125 1.78136 1.76031 1.21794 1.06355 1.26145 1.22604 0.95465 0.94015 0.93098 1.18668 0.92956 0.93127 1.19538 0.91442 0.84181 0.80846 0.82144 0.80940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.85 13.67 21.61 0.30 -51.55 14 2 C -0.01 -0.76 5.49 84.82 0.47 -0.29 14 3 Si 1.02 39.03 29.55 68.60 2.03 41.06 14 4 H -0.24 -8.40 7.11 99.48 0.71 -7.69 14 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 14 6 H -0.27 -10.10 7.11 99.48 0.71 -9.40 14 7 C -0.42 -21.89 9.48 67.91 0.64 -21.24 14 8 H 0.12 5.39 5.18 -2.91 -0.02 5.37 14 9 O -0.20 -11.24 9.67 -20.83 -0.20 -11.44 14 10 C 0.19 8.58 6.71 23.06 0.15 8.73 14 11 C -0.26 -9.92 9.11 22.29 0.20 -9.71 14 12 C -0.01 -0.18 10.05 22.30 0.22 0.04 14 13 C -0.17 -4.93 10.05 22.29 0.22 -4.71 14 14 C -0.09 -3.14 6.72 23.01 0.15 -2.99 14 15 S 0.17 5.75 23.91 -56.49 -1.35 4.40 14 16 N -0.49 -19.75 11.95 -59.84 -0.72 -20.47 14 17 C 0.15 6.52 11.10 85.68 0.95 7.47 14 18 C -0.23 -9.98 5.94 -21.21 -0.13 -10.11 14 19 H 0.28 14.46 8.31 -92.71 -0.77 13.69 14 20 H 0.14 5.17 5.55 -2.91 -0.02 5.16 14 21 H 0.17 3.28 8.06 -2.91 -0.02 3.26 14 22 H 0.16 3.44 8.06 -2.91 -0.02 3.41 14 23 H 0.17 7.45 8.06 -2.91 -0.02 7.43 14 Total: -1.00 -63.11 227.95 4.20 -58.91 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.25 Total: 11.89 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 2.89 Total: -32.80 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -0.42 Total: -72.02 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.20 Total: -11.44 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.35 Total: 4.40 kcal Total: -63.11 4.20 -58.91 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260297794.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.820 kcal (2) G-P(sol) polarization free energy of solvation -63.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds