Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46956 * 2 1 4 4 N 1.46504 * 109.47373 * 119.99617 * 2 1 3 5 5 C 1.37542 * 126.55579 * 300.03281 * 4 2 1 6 6 C 1.39996 * 125.96569 * 0.02562 * 5 4 2 7 7 H 1.07998 * 119.99662 * 359.78493 * 6 5 4 8 8 C 1.40230 * 119.99999 * 179.77381 * 6 5 4 9 9 N 1.30690 * 119.99855 * 182.35365 * 8 6 5 10 10 Si 1.86793 * 120.00241 * 2.35389 * 8 6 5 11 11 H 1.48498 * 109.47502 * 179.97438 * 10 8 6 12 12 H 1.48499 * 109.47396 * 299.99852 * 10 8 6 13 13 H 1.48508 * 109.47067 * 59.99886 * 10 8 6 14 14 N 1.32981 * 108.06952 * 179.77210 * 5 4 2 15 15 C 1.32750 * 109.22902 * 0.21905 * 14 5 4 16 16 C 1.36224 * 108.62025 * 0.02562 * 15 14 5 17 17 C 1.50695 * 126.40264 * 180.02562 * 16 15 14 18 18 C 1.52995 * 117.49966 * 33.60391 * 17 16 15 19 19 C 1.52992 * 117.50228 * 324.97621 * 17 16 15 20 20 H 1.08999 * 109.47505 * 299.99667 * 1 2 3 21 21 H 1.08998 * 109.47456 * 60.00340 * 1 2 3 22 22 H 1.09012 * 109.46641 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47505 * 240.00332 * 2 1 3 24 24 H 1.09001 * 109.47193 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.46761 * 300.00086 * 3 2 1 26 26 H 1.08999 * 109.46742 * 59.99865 * 3 2 1 27 27 H 0.97007 * 120.00346 * 354.55292 * 9 8 6 28 28 H 1.07999 * 125.69495 * 179.97438 * 15 14 5 29 29 H 1.09000 * 115.54595 * 179.30268 * 17 16 15 30 30 H 1.09001 * 117.49903 * 359.97438 * 18 17 16 31 31 H 1.09000 * 117.50212 * 145.01666 * 18 17 16 32 32 H 1.09001 * 117.50117 * 214.97733 * 19 17 16 33 33 H 1.09001 * 117.50054 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7702 -0.3404 2.5030 6 6 0.9995 0.7473 2.9306 7 1 0.5400 1.4020 2.2048 8 6 0.8239 0.9865 4.3011 9 7 0.0670 1.9743 4.7003 10 14 1.6718 -0.1066 5.5562 11 1 1.3276 0.3529 6.9257 12 1 1.2198 -1.5097 5.3763 13 1 3.1425 -0.0318 5.3645 14 7 2.3855 -1.2188 3.2893 15 6 3.0188 -2.1105 2.5371 16 6 2.8091 -1.8018 1.2269 17 6 3.3445 -2.5518 0.0346 18 6 3.4939 -4.0690 0.1632 19 6 4.7360 -3.1755 0.1589 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 -0.3094 2.5898 4.0517 28 1 3.6037 -2.9416 2.9026 29 1 3.0560 -2.1548 -0.9387 30 1 3.2053 -4.5246 1.1104 31 1 3.3036 -4.6706 -0.7256 32 1 5.3628 -3.1894 -0.7327 33 1 5.2644 -3.0431 1.1030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260352341.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = 57.825017 kcal Electronic energy + Delta-G solvation = -15293.841609 eV Core-core repulsion = 12934.432981 eV Total energy + Delta-G solvation = -2359.408628 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55846 -36.58205 -35.06539 -33.45324 -29.82279 -28.81799 -26.78006 -25.00255 -22.35877 -22.03908 -21.68685 -19.68566 -18.16366 -17.46735 -16.13304 -14.74172 -14.19393 -14.10260 -13.86184 -13.54409 -13.07402 -12.74118 -12.39967 -11.89854 -11.73998 -11.61426 -11.26289 -11.17907 -10.93348 -10.73509 -10.39413 -10.20867 -10.11845 -10.10033 -9.37706 -9.03668 -8.25570 -7.86924 -7.23068 -7.10859 -4.46792 3.12849 3.73276 3.75143 3.97031 4.18415 4.30896 4.58295 4.60435 5.08851 5.16322 5.33102 5.33780 5.46852 5.57498 5.61242 5.79017 5.88391 5.94100 6.00104 6.11614 6.20185 6.26511 6.26640 6.36127 6.43265 6.62907 6.68202 6.96568 7.29872 7.65721 7.86349 8.04618 8.39269 8.75151 8.98216 9.69270 10.25271 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.012089 C = 0.009106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.877368 B = 2315.616102 C = 3074.221361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.153 3.847 3 C -0.167 4.167 4 N -0.492 5.492 5 C 0.381 3.619 6 C -0.509 4.509 7 H 0.086 0.914 8 C 0.060 3.940 9 N -0.826 5.826 10 Si 1.135 2.865 11 H -0.328 1.328 12 H -0.278 1.278 13 H -0.284 1.284 14 N -0.598 5.598 15 C 0.014 3.986 16 C -0.098 4.098 17 C -0.051 4.051 18 C -0.179 4.179 19 C -0.179 4.179 20 H 0.081 0.919 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.278 0.722 28 H 0.138 0.862 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.622 -4.741 -9.595 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 C -0.224 4.224 4 N -0.181 5.181 5 C 0.140 3.860 6 C -0.548 4.548 7 H 0.103 0.897 8 C -0.160 4.160 9 N -0.452 5.452 10 Si 0.968 3.032 11 H -0.260 1.260 12 H -0.205 1.205 13 H -0.211 1.211 14 N -0.324 5.324 15 C -0.136 4.136 16 C -0.209 4.209 17 C -0.070 4.070 18 C -0.217 4.217 19 C -0.217 4.217 20 H 0.100 0.900 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.155 0.845 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.675 -4.924 -7.349 9.579 hybrid contribution -0.158 0.321 -2.883 2.905 sum 3.516 -4.603 -10.232 11.758 Atomic orbital electron populations 1.22220 0.94891 1.02300 1.03024 1.20796 0.94440 0.93074 0.86814 1.22223 1.01233 0.95973 1.03013 1.45024 1.43033 1.23866 1.06171 1.20240 0.94127 0.94250 0.77399 1.19535 1.30481 1.09618 0.95197 0.89660 1.27300 0.92378 0.97205 0.99098 1.70661 1.22797 1.12094 1.39609 0.82259 0.76440 0.74622 0.69912 1.26024 1.20529 1.21111 1.69440 1.22335 1.09768 1.30879 1.21415 1.03212 1.00070 0.88868 1.19564 1.10076 0.96767 0.94497 1.19815 0.98467 0.93160 0.95582 1.23005 1.02649 0.93223 1.02790 1.23006 0.90865 1.05022 1.02786 0.90046 0.92389 0.92811 0.90727 0.92802 0.92382 0.90074 0.91124 0.84452 0.88944 0.88691 0.89474 0.89484 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.20 37.16 0.34 -2.57 16 2 C 0.15 2.83 3.40 -67.93 -0.23 2.60 16 3 C -0.17 -2.91 9.20 37.16 0.34 -2.57 16 4 N -0.49 -11.14 2.66 -104.36 -0.28 -11.42 16 5 C 0.38 10.02 6.81 -155.60 -1.06 8.96 16 6 C -0.51 -13.68 7.92 -38.17 -0.30 -13.98 16 7 H 0.09 2.22 4.69 -52.49 -0.25 1.98 16 8 C 0.06 1.67 5.52 -17.29 -0.10 1.57 16 9 N -0.83 -22.95 13.65 55.56 0.76 -22.19 16 10 Si 1.13 29.39 25.72 -169.99 -4.37 25.02 16 11 H -0.33 -8.33 7.11 56.52 0.40 -7.93 16 12 H -0.28 -7.36 6.93 56.52 0.39 -6.96 16 13 H -0.28 -7.48 7.09 56.52 0.40 -7.08 16 14 N -0.60 -16.06 6.42 -12.73 -0.08 -16.14 16 15 C 0.01 0.33 10.92 -17.88 -0.20 0.14 16 16 C -0.10 -2.11 6.66 -81.28 -0.54 -2.65 16 17 C -0.05 -0.85 6.03 -91.78 -0.55 -1.41 16 18 C -0.18 -2.56 10.05 -26.73 -0.27 -2.83 16 19 C -0.18 -2.56 10.06 -26.73 -0.27 -2.83 16 20 H 0.08 1.64 5.57 -51.93 -0.29 1.35 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 23 H 0.07 1.23 6.64 -51.93 -0.34 0.88 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.63 5.57 -51.93 -0.29 1.34 16 27 H 0.28 7.36 8.72 -40.82 -0.36 7.01 16 28 H 0.14 2.84 8.06 -52.49 -0.42 2.41 16 29 H 0.09 1.45 6.90 -51.93 -0.36 1.09 16 30 H 0.09 1.42 7.94 -51.93 -0.41 1.01 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.42 7.98 -51.93 -0.41 1.01 16 LS Contribution 266.26 15.07 4.01 4.01 Total: -1.00 -29.81 266.26 -7.27 -37.08 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.48 Total: -0.78 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -2.83 Total: -15.58 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.40 Total: -49.75 kcal Atomic # 14 Polarization: 29.39 SS G_CDS: -4.37 Total: 25.02 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.81 -7.27 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260352341.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.905 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds