Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46956 * 2 1 4 4 N 1.46504 * 109.47373 * 119.99617 * 2 1 3 5 5 C 1.37542 * 126.55579 * 300.03281 * 4 2 1 6 6 C 1.39996 * 125.96569 * 0.02562 * 5 4 2 7 7 H 1.07998 * 119.99662 * 359.78493 * 6 5 4 8 8 C 1.40230 * 119.99999 * 179.77381 * 6 5 4 9 9 N 1.30690 * 119.99855 * 182.35365 * 8 6 5 10 10 Si 1.86793 * 120.00241 * 2.35389 * 8 6 5 11 11 H 1.48498 * 109.47502 * 179.97438 * 10 8 6 12 12 H 1.48499 * 109.47396 * 299.99852 * 10 8 6 13 13 H 1.48508 * 109.47067 * 59.99886 * 10 8 6 14 14 N 1.32981 * 108.06952 * 179.77210 * 5 4 2 15 15 C 1.32750 * 109.22902 * 0.21905 * 14 5 4 16 16 C 1.36224 * 108.62025 * 0.02562 * 15 14 5 17 17 C 1.50695 * 126.40264 * 180.02562 * 16 15 14 18 18 C 1.52995 * 117.49966 * 33.60391 * 17 16 15 19 19 C 1.52992 * 117.50228 * 324.97621 * 17 16 15 20 20 H 1.08999 * 109.47505 * 299.99667 * 1 2 3 21 21 H 1.08998 * 109.47456 * 60.00340 * 1 2 3 22 22 H 1.09012 * 109.46641 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47505 * 240.00332 * 2 1 3 24 24 H 1.09001 * 109.47193 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.46761 * 300.00086 * 3 2 1 26 26 H 1.08999 * 109.46742 * 59.99865 * 3 2 1 27 27 H 0.97007 * 120.00346 * 354.55292 * 9 8 6 28 28 H 1.07999 * 125.69495 * 179.97438 * 15 14 5 29 29 H 1.09000 * 115.54595 * 179.30268 * 17 16 15 30 30 H 1.09001 * 117.49903 * 359.97438 * 18 17 16 31 31 H 1.09000 * 117.50212 * 145.01666 * 18 17 16 32 32 H 1.09001 * 117.50117 * 214.97733 * 19 17 16 33 33 H 1.09001 * 117.50054 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7702 -0.3404 2.5030 6 6 0.9995 0.7473 2.9306 7 1 0.5400 1.4020 2.2048 8 6 0.8239 0.9865 4.3011 9 7 0.0670 1.9743 4.7003 10 14 1.6718 -0.1066 5.5562 11 1 1.3276 0.3529 6.9257 12 1 1.2198 -1.5097 5.3763 13 1 3.1425 -0.0318 5.3645 14 7 2.3855 -1.2188 3.2893 15 6 3.0188 -2.1105 2.5371 16 6 2.8091 -1.8018 1.2269 17 6 3.3445 -2.5518 0.0346 18 6 3.4939 -4.0690 0.1632 19 6 4.7360 -3.1755 0.1589 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 -0.3094 2.5898 4.0517 28 1 3.6037 -2.9416 2.9026 29 1 3.0560 -2.1548 -0.9387 30 1 3.2053 -4.5246 1.1104 31 1 3.3036 -4.6706 -0.7256 32 1 5.3628 -3.1894 -0.7327 33 1 5.2644 -3.0431 1.1030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260352341.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = 41.131099 kcal Electronic energy + Delta-G solvation = -15294.565511 eV Core-core repulsion = 12934.432981 eV Total energy + Delta-G solvation = -2360.132531 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.36250 -37.86804 -36.65521 -35.47180 -31.59841 -30.65845 -28.18544 -26.80102 -23.93834 -23.35608 -23.14601 -21.52307 -19.80474 -19.40286 -17.66350 -16.32597 -15.82771 -15.61510 -15.47141 -15.36700 -14.82062 -14.43139 -13.99236 -13.72641 -13.17720 -13.12412 -12.78248 -12.72988 -12.35780 -12.26322 -12.11824 -11.95436 -11.60122 -11.41697 -11.23362 -11.12036 -10.06366 -9.84224 -9.23205 -9.03175 -6.45329 1.29843 1.62477 1.77101 2.06829 2.33238 2.42300 2.53506 3.22389 3.36217 3.73537 3.82104 4.04700 4.07987 4.19865 4.29786 4.39794 4.41939 4.64150 4.64592 4.79506 4.81947 4.83067 4.89529 5.06150 5.12293 5.24819 5.34294 5.35830 5.47738 5.63768 6.02300 6.14874 6.49555 6.77405 7.09355 7.80043 8.18717 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.012089 C = 0.009106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.877368 B = 2315.616102 C = 3074.221361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.141 3.859 3 C -0.159 4.159 4 N -0.489 5.489 5 C 0.351 3.649 6 C -0.519 4.519 7 H 0.085 0.915 8 C 0.029 3.971 9 N -0.852 5.852 10 Si 1.170 2.830 11 H -0.323 1.323 12 H -0.291 1.291 13 H -0.296 1.296 14 N -0.626 5.626 15 C -0.034 4.034 16 C -0.066 4.066 17 C -0.083 4.083 18 C -0.161 4.161 19 C -0.161 4.161 20 H 0.047 0.953 21 H 0.097 0.903 22 H 0.048 0.952 23 H 0.107 0.893 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.277 0.723 28 H 0.156 0.844 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 -6.144 -12.628 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 C -0.217 4.217 4 N -0.176 5.176 5 C 0.105 3.895 6 C -0.559 4.559 7 H 0.102 0.898 8 C -0.186 4.186 9 N -0.480 5.480 10 Si 1.003 2.997 11 H -0.256 1.256 12 H -0.219 1.219 13 H -0.224 1.224 14 N -0.353 5.353 15 C -0.181 4.181 16 C -0.178 4.178 17 C -0.102 4.102 18 C -0.199 4.199 19 C -0.199 4.199 20 H 0.066 0.934 21 H 0.116 0.884 22 H 0.067 0.933 23 H 0.125 0.875 24 H 0.068 0.932 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.174 0.826 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.703 -6.329 -10.401 13.052 hybrid contribution -0.367 0.606 -2.161 2.274 sum 4.336 -5.723 -12.562 14.469 Atomic orbital electron populations 1.22150 0.94122 1.02050 1.03326 1.21254 0.95139 0.93664 0.86098 1.22154 1.00855 0.95311 1.03335 1.45405 1.41944 1.23825 1.06429 1.20209 0.95395 0.94719 0.79135 1.19529 1.31192 1.10270 0.94943 0.89764 1.27740 0.92860 0.97714 1.00313 1.70665 1.24598 1.13087 1.39623 0.81722 0.75153 0.73296 0.69491 1.25560 1.21898 1.22369 1.69263 1.22790 1.10617 1.32641 1.21824 1.05284 1.01205 0.89793 1.20397 1.06587 0.95063 0.95775 1.20031 1.01178 0.94775 0.94233 1.23078 1.01696 0.91352 1.03741 1.23077 0.90074 1.02968 1.03747 0.93363 0.88403 0.93289 0.87471 0.93238 0.88404 0.93347 0.91211 0.82637 0.86955 0.89718 0.86366 0.86369 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 9.20 71.98 0.66 -4.58 16 2 C 0.14 4.85 3.40 44.99 0.15 5.00 16 3 C -0.16 -5.22 9.20 71.98 0.66 -4.56 16 4 N -0.49 -21.57 2.66 -484.08 -1.29 -22.86 16 5 C 0.35 18.67 6.81 133.59 0.91 19.58 16 6 C -0.52 -28.81 7.92 23.18 0.18 -28.62 16 7 H 0.08 4.56 4.69 -2.91 -0.01 4.55 16 8 C 0.03 1.68 5.52 85.35 0.47 2.15 16 9 N -0.85 -48.90 13.65 21.88 0.30 -48.60 16 10 Si 1.17 62.07 25.72 68.60 1.76 63.83 16 11 H -0.32 -16.57 7.11 99.48 0.71 -15.87 16 12 H -0.29 -15.82 6.93 99.48 0.69 -15.13 16 13 H -0.30 -16.00 7.09 99.48 0.70 -15.29 16 14 N -0.63 -34.11 6.42 -194.17 -1.25 -35.36 16 15 C -0.03 -1.57 10.92 84.08 0.92 -0.65 16 16 C -0.07 -2.71 6.66 41.37 0.28 -2.43 16 17 C -0.08 -2.45 6.03 -11.55 -0.07 -2.52 16 18 C -0.16 -3.89 10.05 30.59 0.31 -3.59 16 19 C -0.16 -3.89 10.06 30.59 0.31 -3.58 16 20 H 0.05 1.93 5.57 -2.39 -0.01 1.92 16 21 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 22 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.11 3.02 6.64 -2.39 -0.02 3.01 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.05 1.93 5.57 -2.39 -0.01 1.91 16 27 H 0.28 15.28 8.72 -92.70 -0.81 14.47 16 28 H 0.16 6.34 8.06 -2.91 -0.02 6.32 16 29 H 0.11 2.92 6.90 -2.39 -0.02 2.90 16 30 H 0.08 2.26 7.94 -2.39 -0.02 2.24 16 31 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.08 2.26 7.98 -2.39 -0.02 2.24 16 Total: -1.00 -66.52 266.26 5.35 -61.17 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.04 Total: 5.62 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 4.78 Total: -23.80 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -2.23 Total: -106.82 kcal Atomic # 14 Polarization: 62.07 SS G_CDS: 1.76 Total: 63.83 kcal Total: -66.52 5.35 -61.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260352341.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.298 kcal (2) G-P(sol) polarization free energy of solvation -66.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds