Wall clock time and date at job start Mon Mar 30 2020 02:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.44988 * 2 1 4 4 C 1.53093 * 109.42572 * 240.06361 * 2 1 3 5 5 C 1.53382 * 109.50138 * 169.40965 * 4 2 1 6 6 C 1.50731 * 108.34394 * 49.86580 * 5 4 2 7 7 C 1.36697 * 124.26762 * 343.63477 * 6 5 4 8 8 N 1.32265 * 108.49950 * 179.74448 * 7 6 5 9 9 C 1.33190 * 109.17492 * 0.08550 * 8 7 6 10 10 C 1.39998 * 125.93246 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99900 * 180.02562 * 10 9 8 12 12 C 1.40237 * 119.99914 * 0.03119 * 10 9 8 13 13 N 1.30691 * 120.00003 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99962 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46793 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46894 * 119.99599 * 14 12 10 17 17 H 1.48495 * 109.46627 * 239.99493 * 14 12 10 18 18 N 1.35668 * 128.26442 * 163.48544 * 6 5 4 19 19 C 1.46498 * 126.63901 * 0.24150 * 18 6 5 20 20 C 1.50985 * 123.72473 * 359.72031 * 7 6 5 21 21 H 1.09008 * 109.47063 * 299.99861 * 1 2 3 22 22 H 1.08995 * 109.47596 * 60.00179 * 1 2 3 23 23 H 1.09002 * 109.47333 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46910 * 289.40686 * 4 2 1 25 25 H 1.08999 * 109.46779 * 49.39609 * 4 2 1 26 26 H 1.09003 * 109.67091 * 290.16879 * 5 4 2 27 27 H 1.08998 * 109.74554 * 169.61156 * 5 4 2 28 28 H 0.96992 * 119.99876 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.46936 * 269.99623 * 19 18 6 30 30 H 1.08998 * 109.47318 * 29.99371 * 19 18 6 31 31 H 1.08999 * 109.47413 * 149.99606 * 19 18 6 32 32 H 1.08998 * 109.68596 * 223.60756 * 20 7 6 33 33 H 1.09004 * 109.68264 * 103.05227 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0391 -0.7205 -1.2511 5 6 3.5497 -0.4953 -1.3926 6 6 4.2028 -0.8157 -0.0724 7 6 3.5308 -0.9206 1.1133 8 7 4.4014 -1.2153 2.0645 9 6 5.6188 -1.3028 1.5314 10 6 6.7994 -1.5978 2.2234 11 1 7.7390 -1.6442 1.6930 12 6 6.7620 -1.8330 3.6054 13 7 5.6250 -1.7764 4.2473 14 14 8.3375 -2.2259 4.5290 15 1 9.4797 -2.2294 3.5801 16 1 8.5665 -1.1984 5.5764 17 1 8.2183 -3.5626 5.1646 18 7 5.5145 -1.0523 0.1806 19 6 6.6083 -1.0433 -0.7940 20 6 2.0406 -0.7218 1.2528 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8379 -1.7881 -1.1628 25 1 1.5292 -0.3263 -2.1302 26 1 3.7427 0.5449 -1.6548 27 1 3.9485 -1.1495 -2.1679 28 1 5.5992 -1.9387 5.2032 29 1 6.7325 -2.0432 -1.2099 30 1 6.3749 -0.3428 -1.5957 31 1 7.5313 -0.7375 -0.3014 32 1 1.8318 -0.1174 2.1355 33 1 1.5481 -1.6898 1.3452 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260366491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:49 Heat of formation + Delta-G solvation = 32.242348 kcal Electronic energy + Delta-G solvation = -15087.250324 eV Core-core repulsion = 12726.732348 eV Total energy + Delta-G solvation = -2360.517976 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18627 -36.53186 -33.30979 -32.51937 -30.73299 -28.50887 -26.95247 -25.64543 -24.19842 -21.68331 -20.11309 -19.45850 -17.67595 -16.55667 -15.31556 -14.88552 -14.34740 -14.00592 -13.66010 -13.15913 -12.67900 -12.54956 -12.23909 -12.16308 -11.74619 -11.47475 -11.32076 -11.20712 -10.95610 -10.73736 -10.56824 -10.15958 -10.07965 -9.94662 -9.83824 -9.10316 -7.75665 -7.64684 -6.75393 -6.33345 -4.15882 3.06524 3.18635 3.22220 3.64490 4.05908 4.47587 4.70630 5.26295 5.29617 5.41559 5.63454 5.72135 5.78770 5.90369 6.01749 6.08168 6.11119 6.17983 6.25217 6.29721 6.37158 6.40632 6.53703 6.62186 6.64494 6.78786 6.98707 7.26891 7.47578 7.74160 8.20473 8.33415 8.66809 9.03975 9.41089 10.33073 10.59948 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.042336 B = 0.008480 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.220278 B = 3300.939917 C = 3902.839672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.066 0.934 4 C -0.100 4.100 5 C -0.016 4.016 6 C -0.151 4.151 7 C 0.017 3.983 8 N -0.508 5.508 9 C 0.373 3.627 10 C -0.462 4.462 11 H 0.077 0.923 12 C 0.082 3.918 13 N -0.743 5.743 14 Si 0.909 3.091 15 H -0.265 1.265 16 H -0.275 1.275 17 H -0.275 1.275 18 N -0.503 5.503 19 C 0.101 3.899 20 C -0.019 4.019 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.270 0.730 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 1.923 -7.493 8.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.138 4.138 5 C -0.054 4.054 6 C -0.263 4.263 7 C -0.117 4.117 8 N -0.228 5.228 9 C 0.131 3.869 10 C -0.502 4.502 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.368 5.368 14 Si 0.734 3.266 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.201 1.201 18 N -0.192 5.192 19 C -0.044 4.044 20 C -0.057 4.057 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.657 1.801 -6.592 7.750 hybrid contribution 1.104 -0.095 -0.486 1.210 sum -2.553 1.706 -7.078 7.715 Atomic orbital electron populations 1.21831 0.95893 1.01417 1.00986 1.21129 0.94255 0.99765 0.95462 0.91545 1.21499 0.94975 1.00511 0.96840 1.19614 0.93997 0.98931 0.92894 1.20120 0.84944 1.24518 0.96700 1.20472 0.94902 1.06314 0.90057 1.70963 0.97500 1.26572 1.27761 1.20271 0.94098 0.95667 0.76862 1.18109 0.91483 1.47967 0.92647 0.90528 1.25676 0.96983 0.93994 0.97480 1.70031 1.25325 1.32660 1.08819 0.86271 0.82142 0.78509 0.79706 1.18853 1.20091 1.20094 1.44881 1.05314 1.60224 1.08806 1.21393 0.90566 1.00462 0.91938 1.19783 0.90673 0.99080 0.96181 0.92896 0.93269 0.92905 0.92175 0.92708 0.93469 0.93523 0.91906 0.93451 0.92492 0.90985 0.91926 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.16 37.16 0.34 -1.55 16 2 C -0.09 -1.45 2.68 -90.40 -0.24 -1.69 16 3 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 4 C -0.10 -1.61 5.20 -26.49 -0.14 -1.74 16 5 C -0.02 -0.29 5.95 -27.67 -0.16 -0.46 16 6 C -0.15 -3.59 6.76 -81.44 -0.55 -4.14 16 7 C 0.02 0.45 6.97 -82.82 -0.58 -0.13 16 8 N -0.51 -15.14 9.39 -8.75 -0.08 -15.22 16 9 C 0.37 10.75 7.44 -155.20 -1.15 9.60 16 10 C -0.46 -12.91 9.01 -38.17 -0.34 -13.25 16 11 H 0.08 1.98 7.17 -52.49 -0.38 1.60 16 12 C 0.08 2.21 5.50 -17.29 -0.10 2.11 16 13 N -0.74 -21.26 11.89 55.56 0.66 -20.60 16 14 Si 0.91 19.57 29.56 -169.99 -5.03 14.54 16 15 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 N -0.50 -12.51 3.20 -118.69 -0.38 -12.89 16 19 C 0.10 1.94 10.82 59.85 0.65 2.59 16 20 C -0.02 -0.39 5.60 -27.57 -0.15 -0.55 16 21 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 25 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 31 H 0.07 1.34 7.39 -51.93 -0.38 0.95 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 LS Contribution 270.75 15.07 4.08 4.08 Total: -1.00 -32.36 270.75 -8.13 -40.49 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.95 Total: -1.20 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -2.43 Total: -9.21 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.20 Total: -48.71 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.36 -8.13 -40.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260366491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.736 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds