Wall clock time and date at job start Mon Mar 30 2020 02:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.44988 * 2 1 4 4 C 1.53093 * 109.42572 * 240.06361 * 2 1 3 5 5 C 1.53382 * 109.50138 * 169.40965 * 4 2 1 6 6 C 1.50731 * 108.34394 * 49.86580 * 5 4 2 7 7 C 1.36697 * 124.26762 * 343.63477 * 6 5 4 8 8 N 1.32265 * 108.49950 * 179.74448 * 7 6 5 9 9 C 1.33190 * 109.17492 * 0.08550 * 8 7 6 10 10 C 1.39998 * 125.93246 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99900 * 180.02562 * 10 9 8 12 12 C 1.40237 * 119.99914 * 0.03119 * 10 9 8 13 13 N 1.30691 * 120.00003 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99962 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46793 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46894 * 119.99599 * 14 12 10 17 17 H 1.48495 * 109.46627 * 239.99493 * 14 12 10 18 18 N 1.35668 * 128.26442 * 163.48544 * 6 5 4 19 19 C 1.46498 * 126.63901 * 0.24150 * 18 6 5 20 20 C 1.50985 * 123.72473 * 359.72031 * 7 6 5 21 21 H 1.09008 * 109.47063 * 299.99861 * 1 2 3 22 22 H 1.08995 * 109.47596 * 60.00179 * 1 2 3 23 23 H 1.09002 * 109.47333 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46910 * 289.40686 * 4 2 1 25 25 H 1.08999 * 109.46779 * 49.39609 * 4 2 1 26 26 H 1.09003 * 109.67091 * 290.16879 * 5 4 2 27 27 H 1.08998 * 109.74554 * 169.61156 * 5 4 2 28 28 H 0.96992 * 119.99876 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.46936 * 269.99623 * 19 18 6 30 30 H 1.08998 * 109.47318 * 29.99371 * 19 18 6 31 31 H 1.08999 * 109.47413 * 149.99606 * 19 18 6 32 32 H 1.08998 * 109.68596 * 223.60756 * 20 7 6 33 33 H 1.09004 * 109.68264 * 103.05227 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0391 -0.7205 -1.2511 5 6 3.5497 -0.4953 -1.3926 6 6 4.2028 -0.8157 -0.0724 7 6 3.5308 -0.9206 1.1133 8 7 4.4014 -1.2153 2.0645 9 6 5.6188 -1.3028 1.5314 10 6 6.7994 -1.5978 2.2234 11 1 7.7390 -1.6442 1.6930 12 6 6.7620 -1.8330 3.6054 13 7 5.6250 -1.7764 4.2473 14 14 8.3375 -2.2259 4.5290 15 1 9.4797 -2.2294 3.5801 16 1 8.5665 -1.1984 5.5764 17 1 8.2183 -3.5626 5.1646 18 7 5.5145 -1.0523 0.1806 19 6 6.6083 -1.0433 -0.7940 20 6 2.0406 -0.7218 1.2528 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8379 -1.7881 -1.1628 25 1 1.5292 -0.3263 -2.1302 26 1 3.7427 0.5449 -1.6548 27 1 3.9485 -1.1495 -2.1679 28 1 5.5992 -1.9387 5.2032 29 1 6.7325 -2.0432 -1.2099 30 1 6.3749 -0.3428 -1.5957 31 1 7.5313 -0.7375 -0.3014 32 1 1.8318 -0.1174 2.1355 33 1 1.5481 -1.6898 1.3452 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260366491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:49 Heat of formation + Delta-G solvation = 12.783684 kcal Electronic energy + Delta-G solvation = -15088.094115 eV Core-core repulsion = 12726.732348 eV Total energy + Delta-G solvation = -2361.361767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.06845 -37.99791 -35.27128 -34.35699 -32.19514 -30.30014 -28.60400 -27.42314 -25.71982 -23.36104 -21.55945 -21.39575 -19.37381 -18.52733 -17.19479 -16.50463 -16.09289 -15.55258 -15.06075 -14.80573 -14.24169 -14.01895 -13.79222 -13.70303 -13.36971 -13.05144 -12.89486 -12.75624 -12.57019 -12.43627 -12.16789 -11.78457 -11.54906 -11.38136 -11.29942 -11.04366 -9.71415 -9.64903 -8.72829 -8.31431 -6.20940 1.33973 1.41409 1.57677 1.79240 2.25825 2.70529 2.72696 3.60580 3.91107 3.98928 4.07509 4.25335 4.43276 4.48815 4.54774 4.67694 4.70457 4.78305 4.83495 4.97652 5.00004 5.04951 5.10121 5.15707 5.26884 5.35080 5.42290 5.61796 5.66438 5.80617 6.27074 6.34644 6.76208 7.04980 7.44196 8.35393 8.65246 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.042336 B = 0.008480 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.220278 B = 3300.939917 C = 3902.839672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 H 0.060 0.940 4 C -0.096 4.096 5 C -0.016 4.016 6 C -0.135 4.135 7 C -0.036 4.036 8 N -0.556 5.556 9 C 0.330 3.670 10 C -0.493 4.493 11 H 0.087 0.913 12 C 0.029 3.971 13 N -0.796 5.796 14 Si 0.995 3.005 15 H -0.251 1.251 16 H -0.270 1.270 17 H -0.270 1.270 18 N -0.509 5.509 19 C 0.094 3.906 20 C -0.016 4.016 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.274 0.726 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 2.306 -9.731 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 H 0.079 0.921 4 C -0.133 4.133 5 C -0.055 4.055 6 C -0.248 4.248 7 C -0.168 4.168 8 N -0.278 5.278 9 C 0.085 3.915 10 C -0.532 4.532 11 H 0.105 0.895 12 C -0.189 4.189 13 N -0.422 5.422 14 Si 0.815 3.185 15 H -0.174 1.174 16 H -0.195 1.195 17 H -0.195 1.195 18 N -0.197 5.197 19 C -0.049 4.049 20 C -0.055 4.055 21 H 0.072 0.928 22 H 0.095 0.905 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.601 2.192 -8.877 9.827 hybrid contribution 1.036 -0.182 0.082 1.055 sum -2.565 2.010 -8.794 9.379 Atomic orbital electron populations 1.21770 0.92918 1.02233 1.02464 1.21086 0.96640 0.98653 0.93536 0.92112 1.21521 0.93501 1.00323 0.97987 1.19849 0.95218 1.00295 0.90093 1.21100 0.84505 1.20570 0.98576 1.21310 0.96907 1.08130 0.90499 1.70830 0.98977 1.27615 1.30380 1.20643 0.94379 0.97661 0.78838 1.18532 0.91835 1.49140 0.93722 0.89477 1.26773 1.00894 0.93144 0.98102 1.70189 1.28248 1.34494 1.09278 0.84994 0.77211 0.78273 0.78036 1.17446 1.19482 1.19505 1.45254 1.06985 1.58853 1.08632 1.21703 0.89171 1.02385 0.91613 1.19878 0.88212 0.99219 0.98142 0.92774 0.90491 0.92432 0.92823 0.88475 0.91659 0.91568 0.91635 0.91852 0.89241 0.90806 0.93591 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.16 71.98 0.66 -2.53 16 2 C -0.08 -2.50 2.68 -10.65 -0.03 -2.53 16 3 H 0.06 1.96 8.11 -2.39 -0.02 1.94 16 4 C -0.10 -2.72 5.20 30.75 0.16 -2.56 16 5 C -0.02 -0.54 5.95 29.99 0.18 -0.36 16 6 C -0.13 -6.32 6.76 41.61 0.28 -6.04 16 7 C -0.04 -1.88 6.97 42.22 0.29 -1.59 16 8 N -0.56 -34.82 9.39 -181.58 -1.71 -36.52 16 9 C 0.33 19.63 7.44 133.45 0.99 20.63 16 10 C -0.49 -28.34 9.01 23.18 0.21 -28.13 16 11 H 0.09 4.57 7.17 -2.91 -0.02 4.55 16 12 C 0.03 1.61 5.50 85.35 0.47 2.08 16 13 N -0.80 -47.71 11.89 21.88 0.26 -47.45 16 14 Si 0.99 41.04 29.56 68.60 2.03 43.06 16 15 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 16 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 17 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 18 N -0.51 -25.31 3.20 -529.42 -1.69 -27.01 16 19 C 0.09 3.46 10.82 127.77 1.38 4.84 16 20 C -0.02 -0.68 5.60 30.05 0.17 -0.52 16 21 H 0.05 1.24 8.14 -2.38 -0.02 1.23 16 22 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.61 8.11 -2.39 -0.02 1.59 16 25 H 0.10 2.03 8.11 -2.39 -0.02 2.01 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.27 14.91 8.29 -92.71 -0.77 14.14 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.09 2.68 7.98 -2.39 -0.02 2.66 16 31 H 0.07 2.67 7.39 -2.39 -0.02 2.65 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 2.27 8.13 -2.38 -0.02 2.26 16 Total: -1.00 -74.70 270.75 4.74 -69.96 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 1.08 Total: 14.67 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 4.77 Total: -16.72 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -3.14 Total: -110.98 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -74.70 4.74 -69.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260366491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.742 kcal (2) G-P(sol) polarization free energy of solvation -74.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds