Wall clock time and date at job start Mon Mar 30 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.45590 * 2 1 4 4 C 1.53098 * 109.44832 * 119.94677 * 2 1 3 5 5 C 1.53392 * 109.49316 * 190.59219 * 4 2 1 6 6 C 1.50732 * 108.33757 * 310.11554 * 5 4 2 7 7 C 1.36704 * 124.26966 * 16.51171 * 6 5 4 8 8 N 1.32256 * 108.49917 * 180.47779 * 7 6 5 9 9 C 1.33196 * 109.17309 * 359.70772 * 8 7 6 10 10 C 1.39996 * 125.93089 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99986 * 174.03574 * 10 9 8 12 12 C 1.40236 * 120.00076 * 354.03890 * 10 9 8 13 13 N 1.30693 * 119.99572 * 6.01079 * 12 10 9 14 14 Si 1.86800 * 120.00124 * 186.00612 * 12 10 9 15 15 H 1.48492 * 109.46995 * 94.98294 * 14 12 10 16 16 H 1.48504 * 109.46995 * 214.98261 * 14 12 10 17 17 H 1.48503 * 109.47094 * 334.98211 * 14 12 10 18 18 N 1.35666 * 128.26425 * 196.51413 * 6 5 4 19 19 C 1.46497 * 126.63592 * 359.79261 * 18 6 5 20 20 C 1.50983 * 123.72627 * 0.35485 * 7 6 5 21 21 H 1.08999 * 109.47246 * 300.05763 * 1 2 3 22 22 H 1.09006 * 109.46915 * 60.05773 * 1 2 3 23 23 H 1.08999 * 109.47399 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46819 * 70.59002 * 4 2 1 25 25 H 1.09003 * 109.46948 * 310.60088 * 4 2 1 26 26 H 1.08993 * 109.69318 * 190.39893 * 5 4 2 27 27 H 1.09002 * 109.72046 * 69.83922 * 5 4 2 28 28 H 0.97009 * 119.99605 * 179.97438 * 13 12 10 29 29 H 1.08993 * 109.47462 * 269.71305 * 19 18 6 30 30 H 1.09003 * 109.47151 * 149.70713 * 19 18 6 31 31 H 1.09001 * 109.47251 * 29.71141 * 19 18 6 32 32 H 1.08998 * 109.68343 * 136.60386 * 20 7 6 33 33 H 1.08993 * 109.68695 * 257.16107 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0397 -0.7207 1.2509 5 6 3.5504 -0.4950 1.3917 6 6 4.2029 -0.8155 0.0713 7 6 3.5307 -0.9180 -1.1147 8 7 4.4000 -1.2182 -2.0652 9 6 5.6174 -1.3073 -1.5322 10 6 6.7970 -1.6078 -2.2238 11 1 7.7483 -1.5612 -1.7147 12 6 6.7433 -1.9693 -3.5777 13 7 5.6092 -1.9123 -4.2247 14 14 8.2927 -2.5321 -4.4564 15 1 8.3664 -4.0149 -4.4288 16 1 8.2604 -2.0642 -5.8654 17 1 9.4829 -1.9645 -3.7734 18 7 5.5145 -1.0517 -0.1823 19 6 6.6086 -1.0430 0.7918 20 6 2.0412 -0.7144 -1.2544 21 1 -0.3634 0.5147 0.8894 22 1 -0.3633 0.5130 -0.8906 23 1 -0.3634 -1.0276 0.0005 24 1 1.8386 -1.7883 1.1624 25 1 1.5300 -0.3267 2.1302 26 1 3.9488 -1.1497 2.1667 27 1 3.7441 0.5450 1.6542 28 1 5.5721 -2.1620 -5.1614 29 1 7.0302 -0.0400 0.8558 30 1 7.3822 -1.7429 0.4756 31 1 6.2275 -1.3399 1.7689 32 1 1.8343 -0.1122 -2.1391 33 1 1.5453 -1.6809 -1.3434 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260366502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:52 Heat of formation + Delta-G solvation = 12.657667 kcal Electronic energy + Delta-G solvation = -15088.028509 eV Core-core repulsion = 12726.661278 eV Total energy + Delta-G solvation = -2361.367231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.07171 -38.00561 -35.27134 -34.36150 -32.19931 -30.30246 -28.60366 -27.42751 -25.72135 -23.36224 -21.55857 -21.39416 -19.37373 -18.52991 -17.19393 -16.50457 -16.12893 -15.53753 -15.05178 -14.79358 -14.27204 -14.00917 -13.81456 -13.70774 -13.34100 -13.06988 -12.89853 -12.75230 -12.59764 -12.36763 -12.18481 -11.81196 -11.55034 -11.38144 -11.29813 -11.02657 -9.71872 -9.65372 -8.72462 -8.32114 -6.20974 1.34870 1.41337 1.56761 1.79467 2.25863 2.69145 2.73611 3.59417 3.91695 3.97734 4.07924 4.24925 4.42855 4.50032 4.53462 4.67027 4.72019 4.78390 4.83329 4.97482 5.00356 5.04528 5.10104 5.16001 5.26769 5.34994 5.42260 5.61674 5.66448 5.80659 6.27197 6.34421 6.76132 7.04768 7.44164 8.35110 8.64850 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.042346 B = 0.008479 C = 0.007178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.059701 B = 3301.438500 C = 3899.777194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 H 0.060 0.940 4 C -0.095 4.095 5 C -0.016 4.016 6 C -0.135 4.135 7 C -0.036 4.036 8 N -0.557 5.557 9 C 0.330 3.670 10 C -0.494 4.494 11 H 0.087 0.913 12 C 0.030 3.970 13 N -0.795 5.795 14 Si 0.994 3.006 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.252 1.252 18 N -0.509 5.509 19 C 0.093 3.907 20 C -0.016 4.016 21 H 0.076 0.924 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.274 0.726 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 1.987 9.809 10.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 H 0.078 0.922 4 C -0.133 4.133 5 C -0.054 4.054 6 C -0.247 4.247 7 C -0.169 4.169 8 N -0.278 5.278 9 C 0.085 3.915 10 C -0.534 4.534 11 H 0.105 0.895 12 C -0.189 4.189 13 N -0.422 5.422 14 Si 0.815 3.185 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.176 1.176 18 N -0.197 5.197 19 C -0.049 4.049 20 C -0.055 4.055 21 H 0.095 0.905 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.656 1.872 8.952 9.849 hybrid contribution 1.036 -0.201 -0.067 1.057 sum -2.620 1.671 8.884 9.412 Atomic orbital electron populations 1.21768 0.92900 1.02232 1.02470 1.21049 0.96645 0.98708 0.93538 0.92175 1.21522 0.93498 1.00326 0.97970 1.19853 0.95215 1.00285 0.90094 1.21104 0.84476 1.20576 0.98593 1.21304 0.96926 1.08115 0.90517 1.70826 0.99117 1.27487 1.30399 1.20632 0.94388 0.97548 0.78938 1.18500 0.91205 1.47701 0.95955 0.89490 1.26774 1.00684 0.93737 0.97656 1.70192 1.28226 1.34060 1.09703 0.85035 0.77335 0.78812 0.77354 1.19116 1.19727 1.17572 1.45257 1.06968 1.58840 1.08609 1.21709 0.89116 1.02355 0.91741 1.19840 0.88215 0.99276 0.98122 0.90485 0.92771 0.92432 0.92798 0.88453 0.91478 0.91731 0.91617 0.91886 0.90765 0.89194 0.93502 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.16 71.98 0.66 -2.52 16 2 C -0.08 -2.51 2.66 -10.72 -0.03 -2.54 16 3 H 0.06 1.95 8.11 -2.39 -0.02 1.93 16 4 C -0.10 -2.72 5.21 30.76 0.16 -2.56 16 5 C -0.02 -0.54 5.97 29.99 0.18 -0.36 16 6 C -0.13 -6.31 6.76 41.62 0.28 -6.03 16 7 C -0.04 -1.89 6.98 42.23 0.29 -1.60 16 8 N -0.56 -34.84 9.42 -181.59 -1.71 -36.55 16 9 C 0.33 19.64 7.43 133.45 0.99 20.64 16 10 C -0.49 -28.43 8.97 23.18 0.21 -28.22 16 11 H 0.09 4.57 7.26 -2.91 -0.02 4.54 16 12 C 0.03 1.65 5.49 85.35 0.47 2.12 16 13 N -0.80 -47.69 11.92 21.88 0.26 -47.43 16 14 Si 0.99 41.02 29.57 68.60 2.03 43.05 16 15 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 16 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 17 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 18 N -0.51 -25.29 3.20 -529.42 -1.69 -26.98 16 19 C 0.09 3.44 10.82 127.77 1.38 4.82 16 20 C -0.02 -0.69 5.60 29.98 0.17 -0.52 16 21 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.62 8.12 -2.39 -0.02 1.60 16 25 H 0.10 2.03 8.11 -2.39 -0.02 2.01 16 26 H 0.07 2.00 7.87 -2.39 -0.02 1.98 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.27 14.94 8.29 -92.70 -0.77 14.17 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 30 H 0.07 2.68 7.46 -2.39 -0.02 2.66 16 31 H 0.09 2.68 7.72 -2.39 -0.02 2.66 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.05 2.23 8.11 -2.39 -0.02 2.21 16 Total: -1.00 -74.70 270.37 4.73 -69.97 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.08 Total: 14.72 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.76 Total: -16.78 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -3.14 Total: -110.96 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -74.70 4.73 -69.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260366502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.627 kcal (2) G-P(sol) polarization free energy of solvation -74.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds