Wall clock time and date at job start Mon Mar 30 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46466 * 2 1 4 4 C 1.53092 * 109.46402 * 240.01524 * 2 1 3 5 5 C 1.53334 * 109.60409 * 169.43822 * 4 2 1 6 6 C 1.50979 * 108.37287 * 50.27331 * 5 4 2 7 7 N 1.32265 * 127.77264 * 163.24080 * 6 5 4 8 8 C 1.33352 * 109.15743 * 180.16178 * 7 6 5 9 9 C 1.39999 * 125.93837 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99612 * 174.17542 * 9 8 7 11 11 C 1.40234 * 120.00503 * 354.17627 * 9 8 7 12 12 N 1.30690 * 119.99732 * 6.04545 * 11 9 8 13 13 Si 1.86796 * 120.00478 * 186.04723 * 11 9 8 14 14 H 1.48501 * 109.47412 * 94.98184 * 13 11 9 15 15 H 1.48503 * 109.47134 * 214.98226 * 13 11 9 16 16 H 1.48506 * 109.46830 * 334.97997 * 13 11 9 17 17 N 1.37775 * 108.12764 * 359.93765 * 8 7 6 18 18 C 1.46499 * 126.63615 * 179.97438 * 17 8 7 19 19 C 1.35666 * 106.71935 * 359.97438 * 17 8 7 20 20 C 1.50730 * 128.26119 * 180.14251 * 19 17 8 21 21 H 1.08998 * 109.47501 * 300.00668 * 1 2 3 22 22 H 1.09000 * 109.47171 * 60.01296 * 1 2 3 23 23 H 1.09003 * 109.46975 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.45127 * 289.47847 * 4 2 1 25 25 H 1.09001 * 109.44870 * 49.39526 * 4 2 1 26 26 H 1.09001 * 109.68082 * 170.00006 * 5 4 2 27 27 H 1.09003 * 109.68092 * 290.51839 * 5 4 2 28 28 H 0.97004 * 120.00255 * 179.97438 * 12 11 9 29 29 H 1.08996 * 109.47223 * 269.99230 * 18 17 8 30 30 H 1.08999 * 109.47791 * 29.99886 * 18 17 8 31 31 H 1.09012 * 109.46959 * 150.00112 * 18 17 8 32 32 H 1.08999 * 109.69097 * 43.78619 * 20 19 17 33 33 H 1.08996 * 109.69120 * 283.24086 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2502 5 6 3.5504 -0.4980 -1.3929 6 6 4.2069 -0.8278 -0.0739 7 7 5.4875 -1.0646 0.1568 8 6 5.6585 -1.3198 1.4545 9 6 6.8752 -1.6170 2.0801 10 1 6.9198 -1.7159 3.1547 11 6 8.0359 -1.7863 1.3117 12 7 8.0086 -1.5513 0.0263 13 14 9.6210 -2.3478 2.1250 14 1 9.7477 -3.8219 1.9973 15 1 10.7768 -1.6924 1.4618 16 1 9.5986 -1.9755 3.5624 17 7 4.4299 -1.2392 2.0727 18 6 4.1521 -1.4477 3.4960 19 6 3.5273 -0.9294 1.1085 20 6 2.0413 -0.7223 1.2527 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5136 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8379 -1.7888 -1.1613 25 1 1.5303 -0.3279 -2.1297 26 1 3.9457 -1.1489 -2.1728 27 1 3.7448 0.5432 -1.6502 28 1 8.8116 -1.6681 -0.5052 29 1 3.9285 -2.4999 3.6721 30 1 5.0239 -1.1583 4.0827 31 1 3.2968 -0.8401 3.7920 32 1 1.8390 -0.1156 2.1354 33 1 1.5436 -1.6872 1.3483 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260380035.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:55 Heat of formation + Delta-G solvation = 31.989670 kcal Electronic energy + Delta-G solvation = -15090.810234 eV Core-core repulsion = 12730.281301 eV Total energy + Delta-G solvation = -2360.528933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.17804 -36.53448 -33.26645 -32.75438 -30.08829 -29.15939 -26.90242 -25.59466 -24.08367 -21.72807 -20.24112 -19.36594 -17.68008 -16.57827 -15.38488 -14.65525 -14.47341 -13.99026 -13.70549 -13.26720 -12.74161 -12.52851 -12.20078 -12.07620 -11.71469 -11.63612 -11.34266 -11.20120 -10.98473 -10.66326 -10.57953 -10.17904 -10.05496 -9.97160 -9.88041 -9.08209 -7.75936 -7.65027 -6.74839 -6.34053 -4.15659 3.07481 3.18584 3.21311 3.64738 4.05868 4.45863 4.70518 5.23637 5.28521 5.37313 5.61289 5.71744 5.79376 5.88484 6.05325 6.08295 6.10275 6.16016 6.17613 6.18697 6.30293 6.49312 6.52530 6.61511 6.67641 6.79369 6.96040 7.26933 7.47400 7.74174 8.20411 8.33349 8.66657 9.03825 9.40974 10.32485 10.59618 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.049358 B = 0.008161 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.150509 B = 3430.276076 C = 3937.281590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 H 0.068 0.932 4 C -0.105 4.105 5 C -0.026 4.026 6 C 0.017 3.983 7 N -0.508 5.508 8 C 0.373 3.627 9 C -0.463 4.463 10 H 0.076 0.924 11 C 0.083 3.917 12 N -0.743 5.743 13 Si 0.909 3.091 14 H -0.272 1.272 15 H -0.278 1.278 16 H -0.265 1.265 17 N -0.502 5.502 18 C 0.101 3.899 19 C -0.151 4.151 20 C -0.008 4.008 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.271 0.729 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.773 1.073 1.821 9.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.143 4.143 5 C -0.065 4.065 6 C -0.118 4.118 7 N -0.228 5.228 8 C 0.131 3.869 9 C -0.503 4.503 10 H 0.095 0.905 11 C -0.141 4.141 12 N -0.368 5.368 13 Si 0.734 3.266 14 H -0.198 1.198 15 H -0.203 1.203 16 H -0.189 1.189 17 N -0.191 5.191 18 C -0.044 4.044 19 C -0.263 4.263 20 C -0.047 4.047 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.114 1.086 1.149 8.266 hybrid contribution 0.130 -0.331 1.170 1.223 sum -7.984 0.755 2.318 8.348 Atomic orbital electron populations 1.21836 0.95930 1.01352 1.01013 1.21065 0.94039 0.99803 0.95304 0.91374 1.21568 0.96029 1.00227 0.96456 1.19751 0.92507 1.00199 0.94013 1.20481 0.92121 1.06429 0.92738 1.71027 1.13578 1.25793 1.12439 1.20305 0.84058 0.95979 0.86578 1.18074 0.89929 1.48376 0.93922 0.90545 1.25671 0.99709 0.94090 0.94608 1.70029 1.28459 1.32554 1.05787 0.86314 0.81065 0.79230 0.80009 1.19791 1.20326 1.18947 1.44870 1.08310 1.59924 1.06014 1.21396 1.01047 1.00152 0.81764 1.20124 0.91504 1.24175 0.90519 1.19639 0.90411 0.98226 0.96385 0.93179 0.92979 0.92965 0.92349 0.92621 0.91849 0.92380 0.91855 0.93372 0.91019 0.92515 0.93628 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.16 37.16 0.34 -1.44 16 2 C -0.08 -1.33 2.69 -90.38 -0.24 -1.57 16 3 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 4 C -0.10 -1.74 5.19 -26.51 -0.14 -1.88 16 5 C -0.03 -0.55 6.30 -27.57 -0.17 -0.72 16 6 C 0.02 0.44 6.98 -82.81 -0.58 -0.13 16 7 N -0.51 -15.16 9.43 -8.70 -0.08 -15.24 16 8 C 0.37 10.74 7.44 -155.06 -1.15 9.59 16 9 C -0.46 -12.94 9.02 -38.17 -0.34 -13.28 16 10 H 0.08 1.97 7.13 -52.48 -0.37 1.60 16 11 C 0.08 2.22 5.49 -17.29 -0.09 2.13 16 12 N -0.74 -21.27 11.92 55.56 0.66 -20.61 16 13 Si 0.91 19.57 29.57 -169.99 -5.03 14.55 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 17 N -0.50 -12.48 3.20 -118.63 -0.38 -12.86 16 18 C 0.10 1.94 10.84 59.85 0.65 2.59 16 19 C -0.15 -3.60 6.76 -81.42 -0.55 -4.15 16 20 C -0.01 -0.15 5.27 -27.67 -0.15 -0.30 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 25 H 0.06 0.78 8.11 -51.93 -0.42 0.35 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.33 7.34 -51.93 -0.38 0.95 16 31 H 0.06 0.94 7.73 -51.92 -0.40 0.54 16 32 H 0.05 0.78 7.87 -51.93 -0.41 0.38 16 33 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 LS Contribution 270.24 15.07 4.07 4.07 Total: -1.00 -32.36 270.24 -8.11 -40.47 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.92 Total: -1.22 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.43 Total: -9.16 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.20 Total: -48.71 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.36 -8.11 -40.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260380035.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.457 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds