Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46466 * 2 1 4 4 C 1.53092 * 109.46402 * 240.01524 * 2 1 3 5 5 C 1.53334 * 109.60409 * 169.43822 * 4 2 1 6 6 C 1.50979 * 108.37287 * 50.27331 * 5 4 2 7 7 N 1.32265 * 127.77264 * 163.24080 * 6 5 4 8 8 C 1.33352 * 109.15743 * 180.16178 * 7 6 5 9 9 C 1.39999 * 125.93837 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99612 * 174.17542 * 9 8 7 11 11 C 1.40234 * 120.00503 * 354.17627 * 9 8 7 12 12 N 1.30690 * 119.99732 * 6.04545 * 11 9 8 13 13 Si 1.86796 * 120.00478 * 186.04723 * 11 9 8 14 14 H 1.48501 * 109.47412 * 94.98184 * 13 11 9 15 15 H 1.48503 * 109.47134 * 214.98226 * 13 11 9 16 16 H 1.48506 * 109.46830 * 334.97997 * 13 11 9 17 17 N 1.37775 * 108.12764 * 359.93765 * 8 7 6 18 18 C 1.46499 * 126.63615 * 179.97438 * 17 8 7 19 19 C 1.35666 * 106.71935 * 359.97438 * 17 8 7 20 20 C 1.50730 * 128.26119 * 180.14251 * 19 17 8 21 21 H 1.08998 * 109.47501 * 300.00668 * 1 2 3 22 22 H 1.09000 * 109.47171 * 60.01296 * 1 2 3 23 23 H 1.09003 * 109.46975 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.45127 * 289.47847 * 4 2 1 25 25 H 1.09001 * 109.44870 * 49.39526 * 4 2 1 26 26 H 1.09001 * 109.68082 * 170.00006 * 5 4 2 27 27 H 1.09003 * 109.68092 * 290.51839 * 5 4 2 28 28 H 0.97004 * 120.00255 * 179.97438 * 12 11 9 29 29 H 1.08996 * 109.47223 * 269.99230 * 18 17 8 30 30 H 1.08999 * 109.47791 * 29.99886 * 18 17 8 31 31 H 1.09012 * 109.46959 * 150.00112 * 18 17 8 32 32 H 1.08999 * 109.69097 * 43.78619 * 20 19 17 33 33 H 1.08996 * 109.69120 * 283.24086 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2502 5 6 3.5504 -0.4980 -1.3929 6 6 4.2069 -0.8278 -0.0739 7 7 5.4875 -1.0646 0.1568 8 6 5.6585 -1.3198 1.4545 9 6 6.8752 -1.6170 2.0801 10 1 6.9198 -1.7159 3.1547 11 6 8.0359 -1.7863 1.3117 12 7 8.0086 -1.5513 0.0263 13 14 9.6210 -2.3478 2.1250 14 1 9.7477 -3.8219 1.9973 15 1 10.7768 -1.6924 1.4618 16 1 9.5986 -1.9755 3.5624 17 7 4.4299 -1.2392 2.0727 18 6 4.1521 -1.4477 3.4960 19 6 3.5273 -0.9294 1.1085 20 6 2.0413 -0.7223 1.2527 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5136 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8379 -1.7888 -1.1613 25 1 1.5303 -0.3279 -2.1297 26 1 3.9457 -1.1489 -2.1728 27 1 3.7448 0.5432 -1.6502 28 1 8.8116 -1.6681 -0.5052 29 1 3.9285 -2.4999 3.6721 30 1 5.0239 -1.1583 4.0827 31 1 3.2968 -0.8401 3.7920 32 1 1.8390 -0.1156 2.1354 33 1 1.5436 -1.6872 1.3483 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260380035.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = 12.539752 kcal Electronic energy + Delta-G solvation = -15091.653646 eV Core-core repulsion = 12730.281301 eV Total energy + Delta-G solvation = -2361.372345 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.05990 -37.98470 -35.23847 -34.54211 -31.60950 -30.87300 -28.64039 -27.28232 -25.62206 -23.43703 -21.76511 -21.18006 -19.38827 -18.54522 -17.23538 -16.29603 -16.22171 -15.52020 -15.04535 -14.95866 -14.30918 -14.02648 -13.76186 -13.56538 -13.30502 -13.14035 -12.95261 -12.78544 -12.56658 -12.34642 -12.17148 -11.80446 -11.54836 -11.41747 -11.29123 -11.02375 -9.71867 -9.65575 -8.72501 -8.32209 -6.20766 1.34872 1.41471 1.56878 1.79352 2.25856 2.68403 2.73343 3.59468 3.93746 3.98196 4.05692 4.24053 4.36907 4.52720 4.56689 4.67220 4.71821 4.77319 4.81686 4.93082 4.96106 5.05755 5.10373 5.21374 5.29284 5.32933 5.42213 5.60264 5.66731 5.80641 6.26818 6.34580 6.75930 7.04675 7.43927 8.34577 8.64782 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.049358 B = 0.008161 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.150509 B = 3430.276076 C = 3937.281590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 H 0.059 0.941 4 C -0.096 4.096 5 C -0.025 4.025 6 C -0.035 4.035 7 N -0.557 5.557 8 C 0.330 3.670 9 C -0.494 4.494 10 H 0.087 0.913 11 C 0.030 3.970 12 N -0.795 5.795 13 Si 0.995 3.005 14 H -0.267 1.267 15 H -0.272 1.272 16 H -0.252 1.252 17 N -0.508 5.508 18 C 0.094 3.906 19 C -0.136 4.136 20 C -0.007 4.007 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.274 0.726 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 1.078 3.051 11.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 H 0.078 0.922 4 C -0.133 4.133 5 C -0.064 4.064 6 C -0.168 4.168 7 N -0.278 5.278 8 C 0.085 3.915 9 C -0.533 4.533 10 H 0.105 0.895 11 C -0.188 4.188 12 N -0.422 5.422 13 Si 0.815 3.185 14 H -0.192 1.192 15 H -0.197 1.197 16 H -0.176 1.176 17 N -0.196 5.196 18 C -0.049 4.049 19 C -0.248 4.248 20 C -0.046 4.046 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.021 1.096 2.401 10.363 hybrid contribution 0.580 -0.304 0.805 1.037 sum -9.441 0.792 3.206 10.002 Atomic orbital electron populations 1.21754 0.92423 1.02396 1.02616 1.21064 0.96768 0.98629 0.93472 0.92247 1.21537 0.92847 1.00417 0.98533 1.19853 0.95333 0.99673 0.91518 1.21319 0.91540 1.08262 0.95655 1.70895 1.16243 1.26815 1.13869 1.20676 0.85769 0.97895 0.87174 1.18504 0.90655 1.49532 0.94653 0.89474 1.26770 1.03500 0.93504 0.95063 1.70185 1.29790 1.34434 1.07773 0.85033 0.75615 0.78651 0.79222 1.19154 1.19705 1.17559 1.45240 1.07532 1.58654 1.08197 1.21704 1.02474 1.01858 0.78835 1.21088 0.93877 1.20224 0.89660 1.19860 0.86428 0.99700 0.98569 0.91894 0.91202 0.92176 0.92674 0.89260 0.93236 0.92470 0.91597 0.91799 0.90794 0.89311 0.91802 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.16 71.98 0.66 -2.06 16 2 C -0.08 -2.32 2.69 -10.64 -0.03 -2.35 16 3 H 0.06 1.83 8.11 -2.38 -0.02 1.81 16 4 C -0.10 -2.98 5.19 30.74 0.16 -2.82 16 5 C -0.03 -1.07 6.30 30.05 0.19 -0.88 16 6 C -0.03 -1.84 6.98 42.23 0.29 -1.54 16 7 N -0.56 -34.78 9.43 -181.44 -1.71 -36.49 16 8 C 0.33 19.62 7.44 133.40 0.99 20.61 16 9 C -0.49 -28.40 9.02 23.18 0.21 -28.19 16 10 H 0.09 4.57 7.13 -2.91 -0.02 4.55 16 11 C 0.03 1.66 5.49 85.35 0.47 2.13 16 12 N -0.80 -47.64 11.92 21.88 0.26 -47.38 16 13 Si 0.99 40.98 29.57 68.60 2.03 43.01 16 14 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 15 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 16 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 17 N -0.51 -25.30 3.20 -529.22 -1.69 -26.99 16 18 C 0.09 3.47 10.84 127.77 1.39 4.85 16 19 C -0.14 -6.38 6.76 41.63 0.28 -6.10 16 20 C -0.01 -0.25 5.27 29.98 0.16 -0.09 16 21 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.05 1.75 8.11 -2.39 -0.02 1.73 16 25 H 0.09 2.19 8.11 -2.39 -0.02 2.17 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.27 14.93 8.29 -92.70 -0.77 14.16 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.07 2.67 7.34 -2.39 -0.02 2.65 16 31 H 0.09 2.67 7.73 -2.38 -0.02 2.65 16 32 H 0.06 1.96 7.87 -2.39 -0.02 1.94 16 33 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 Total: -1.00 -74.41 270.24 4.74 -69.67 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.08 Total: 14.61 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 4.77 Total: -16.43 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -3.14 Total: -110.87 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -74.41 4.74 -69.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260380035.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.213 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds